Wall clock time and date at job start Tue Mar 31 2020 10:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47028 * 2 1 4 4 C 1.35971 * 116.99809 * 179.97438 * 3 2 1 5 5 C 1.38725 * 119.98372 * 179.97438 * 4 3 2 6 6 C 1.38084 * 120.01974 * 180.02562 * 5 4 3 7 7 C 1.38870 * 119.98226 * 359.97438 * 6 5 4 8 8 N 1.40015 * 120.02099 * 180.02562 * 7 6 5 9 9 C 1.46496 * 120.00392 * 188.07536 * 8 7 6 10 10 C 1.50704 * 109.47038 * 263.38604 * 9 8 7 11 11 H 1.07999 * 120.00239 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99670 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00188 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99824 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47288 * 89.99740 * 14 12 10 16 16 H 1.48499 * 109.47241 * 209.99909 * 14 12 10 17 17 H 1.48499 * 109.47101 * 329.99847 * 14 12 10 18 18 C 1.34775 * 119.99682 * 8.07964 * 8 7 6 19 19 O 1.21634 * 120.00171 * 6.02318 * 18 8 7 20 20 C 1.47072 * 119.99947 * 186.02760 * 18 8 7 21 21 C 1.32635 * 124.61981 * 173.01845 * 20 18 8 22 22 C 1.51114 * 110.75404 * 180.28388 * 21 20 18 23 23 C 1.54765 * 104.74986 * 343.00379 * 22 21 20 24 24 C 1.51110 * 124.62050 * 353.04021 * 20 18 8 25 25 C 1.38879 * 119.96369 * 0.28139 * 7 6 5 26 26 C 1.38077 * 119.98110 * 359.46621 * 25 7 6 27 27 H 1.08998 * 109.47507 * 60.00128 * 1 2 3 28 28 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47513 * 299.99933 * 1 2 3 30 30 H 1.09003 * 109.46856 * 240.00063 * 2 1 3 31 31 H 1.08998 * 109.47030 * 120.00104 * 2 1 3 32 32 H 1.07998 * 119.98931 * 0.02562 * 5 4 3 33 33 H 1.07998 * 120.01508 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46864 * 23.38557 * 9 8 7 35 35 H 1.09004 * 109.47467 * 143.38749 * 9 8 7 36 36 H 0.97006 * 119.99921 * 179.97438 * 13 12 10 37 37 H 1.07994 * 124.62355 * 0.02562 * 21 20 18 38 38 H 1.08994 * 110.36571 * 101.97279 * 22 21 20 39 39 H 1.09002 * 110.36678 * 224.29799 * 22 21 20 40 40 H 1.09001 * 111.21546 * 267.22091 * 23 22 21 41 41 H 1.08999 * 110.82601 * 143.37518 * 23 22 21 42 42 H 1.08998 * 110.36578 * 315.41960 * 24 20 18 43 43 H 1.08997 * 110.36371 * 77.63661 * 24 20 18 44 44 H 1.07995 * 120.00715 * 179.70099 * 25 7 6 45 45 H 1.08002 * 119.99565 * 180.23716 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3543 1.5254 0.0005 5 6 3.8842 2.8074 0.0000 6 6 5.2530 2.9892 0.0001 7 6 6.0993 1.8881 0.0011 8 7 7.4873 2.0715 0.0017 9 6 8.3782 0.9221 -0.1754 10 6 8.8388 0.4311 1.1729 11 1 8.5021 0.9261 2.0718 12 6 9.6911 -0.6493 1.2588 13 7 10.1016 -1.2517 0.1641 14 14 10.2615 -1.2583 2.9300 15 1 9.3121 -2.2829 3.4340 16 1 11.6146 -1.8570 2.8033 17 1 10.3113 -0.1192 3.8814 18 6 8.0039 3.3055 0.1652 19 8 7.2717 4.2424 0.4214 20 6 9.4531 3.5194 0.0339 21 6 10.0435 4.7071 0.0446 22 6 11.5388 4.5632 -0.1192 23 6 11.8291 3.0771 0.2012 24 6 10.4722 2.4161 -0.1321 25 6 5.5680 0.6050 -0.0038 26 6 4.1991 0.4249 0.0015 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2259 3.6636 -0.0004 33 1 5.6654 3.9873 -0.0008 34 1 7.8431 0.1236 -0.6896 35 1 9.2429 1.2204 -0.7683 36 1 10.7015 -2.0116 0.2246 37 1 9.5258 5.6488 0.1514 38 1 11.8326 4.7978 -1.1423 39 1 12.0617 5.2108 0.5846 40 1 12.0811 2.9424 1.2531 41 1 12.6203 2.6897 -0.4407 42 1 10.2662 1.6018 0.5625 43 1 10.4694 2.0485 -1.1582 44 1 6.2255 -0.2517 -0.0078 45 1 3.7857 -0.5728 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471788052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:01 Heat of formation + Delta-G solvation = -0.556643 kcal Electronic energy + Delta-G solvation = -26505.639573 eV Core-core repulsion = 22876.007194 eV Total energy + Delta-G solvation = -3629.632379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43053 -39.38036 -37.67202 -36.61946 -35.13801 -32.82219 -31.69884 -30.48237 -29.52956 -28.68567 -27.24895 -27.03261 -24.07278 -23.33078 -22.52251 -21.49940 -20.38649 -20.06660 -17.93857 -17.75159 -16.86638 -16.60574 -15.96255 -15.93314 -15.25871 -15.03169 -14.80928 -14.49907 -14.02788 -13.83241 -13.23121 -13.14326 -12.89804 -12.70760 -12.57590 -12.36598 -12.15886 -12.13169 -11.80188 -11.70905 -11.51998 -11.39006 -11.17962 -11.10031 -10.95220 -10.78213 -10.65406 -10.45369 -10.25812 -9.96912 -9.44981 -8.96841 -8.83280 -8.64572 -8.47179 -8.30224 -6.89622 -6.32281 -4.39208 1.62472 1.87257 2.21116 3.15329 3.23363 3.27351 3.44988 3.72453 3.82173 4.21435 4.45419 4.90861 4.96354 4.97276 4.99881 5.11651 5.20977 5.33540 5.34718 5.47899 5.49819 5.54194 5.73002 5.73592 5.80037 5.93467 5.98535 6.03063 6.14177 6.19801 6.28400 6.39272 6.45284 6.57109 6.60803 6.75733 6.78111 6.85266 6.97202 7.04714 7.12873 7.14775 7.43226 7.60394 7.65394 7.84820 7.90256 8.12878 8.64673 8.82447 9.23977 10.70971 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.004359 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.386080 B = 6422.467420 C = 8205.794100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.323 6.323 4 C 0.086 3.914 5 C -0.135 4.135 6 C -0.134 4.134 7 C 0.137 3.863 8 N -0.526 5.526 9 C 0.197 3.803 10 C -0.534 4.534 11 H 0.064 0.936 12 C 0.071 3.929 13 N -0.881 5.881 14 Si 0.894 3.106 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.566 3.434 19 O -0.550 6.550 20 C -0.154 4.154 21 C -0.109 4.109 22 C -0.100 4.100 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.108 4.108 26 C -0.187 4.187 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.178 0.822 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.268 0.732 37 H 0.129 0.871 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.151 0.849 43 H 0.075 0.925 44 H 0.141 0.859 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 3.384 -2.371 7.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.238 6.238 4 C 0.041 3.959 5 C -0.154 4.154 6 C -0.154 4.154 7 C 0.041 3.959 8 N -0.245 5.245 9 C 0.079 3.921 10 C -0.572 4.572 11 H 0.082 0.918 12 C -0.134 4.134 13 N -0.518 5.518 14 Si 0.721 3.279 15 H -0.204 1.204 16 H -0.208 1.208 17 H -0.195 1.195 18 C 0.359 3.641 19 O -0.433 6.433 20 C -0.157 4.157 21 C -0.129 4.129 22 C -0.137 4.137 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.129 4.129 26 C -0.206 4.206 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.195 0.805 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.147 0.853 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.168 0.832 43 H 0.093 0.907 44 H 0.159 0.841 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.300 3.803 -2.328 7.718 hybrid contribution 0.373 -0.914 0.910 1.342 sum -5.928 2.888 -1.418 6.745 Atomic orbital electron populations 1.21756 0.93284 1.02466 1.03232 1.22667 0.95324 0.82821 1.01260 1.86014 1.19679 1.28393 1.89686 1.18947 0.81641 0.94351 1.00968 1.20324 0.94838 0.94177 1.06077 1.22347 0.91520 1.01661 0.99853 1.17991 0.83358 0.93801 1.00717 1.45841 1.04430 1.09480 1.64702 1.20631 0.90264 0.82645 0.98554 1.21322 1.28701 1.14654 0.92567 0.91794 1.24904 0.95709 0.95685 0.97069 1.69917 1.33076 1.21587 1.27254 0.86533 0.78193 0.79359 0.83830 1.20358 1.20808 1.19517 1.18166 0.87978 0.81832 0.76155 1.90399 1.60081 1.42931 1.49881 1.21812 0.92734 0.97311 1.03817 1.23848 0.95773 0.97216 0.96057 1.21441 0.92935 0.98033 1.01324 1.22504 0.98395 0.93905 1.01415 1.22386 0.90062 0.99320 1.04517 1.20911 0.94504 0.96547 1.00891 1.20940 0.93612 0.97533 1.08534 0.91745 0.90717 0.91725 0.92344 0.92315 0.85818 0.80524 0.93873 0.90506 0.92171 0.85340 0.90618 0.91286 0.91412 0.91437 0.83190 0.90711 0.84128 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.05 0.64 5.46 37.16 0.20 0.85 16 3 O -0.32 -5.00 10.14 -19.65 -0.20 -5.20 16 4 C 0.09 1.49 6.69 -39.22 -0.26 1.22 16 5 C -0.13 -2.41 9.98 -39.46 -0.39 -2.80 16 6 C -0.13 -2.67 8.96 -39.40 -0.35 -3.03 16 7 C 0.14 2.89 6.49 -83.65 -0.54 2.35 16 8 N -0.53 -11.56 2.70 -116.02 -0.31 -11.88 16 9 C 0.20 4.50 4.20 -5.19 -0.02 4.48 16 10 C -0.53 -13.07 6.95 -34.44 -0.24 -13.31 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.07 1.74 4.99 -17.82 -0.09 1.65 16 13 N -0.88 -22.19 13.29 55.43 0.74 -21.45 16 14 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 C 0.57 12.26 7.48 -12.68 -0.09 12.17 16 19 O -0.55 -12.32 13.30 5.25 0.07 -12.25 16 20 C -0.15 -2.98 5.98 -102.74 -0.61 -3.59 16 21 C -0.11 -1.80 10.43 -36.00 -0.38 -2.17 16 22 C -0.10 -1.38 6.81 -26.75 -0.18 -1.57 16 23 C -0.12 -1.95 7.17 -24.97 -0.18 -2.13 16 24 C -0.13 -2.43 4.37 -26.85 -0.12 -2.55 16 25 C -0.11 -2.13 9.15 -39.40 -0.36 -2.49 16 26 C -0.19 -3.23 9.03 -39.46 -0.36 -3.59 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.64 7.66 -51.93 -0.40 0.25 16 31 H 0.06 0.66 7.66 -51.93 -0.40 0.27 16 32 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.18 3.67 4.73 -55.12 -0.26 3.41 16 34 H 0.04 1.03 6.19 -51.93 -0.32 0.71 16 35 H 0.08 1.75 3.70 -51.93 -0.19 1.56 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.15 16 37 H 0.13 1.99 8.04 -52.49 -0.42 1.57 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.15 3.33 3.55 -51.93 -0.18 3.14 16 43 H 0.07 1.44 6.88 -51.93 -0.36 1.08 16 44 H 0.14 2.88 6.23 -52.49 -0.33 2.55 16 45 H 0.12 1.80 6.29 -52.49 -0.33 1.47 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -26.91 356.81 -9.07 -35.97 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.12 Total: 10.40 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -3.60 Total: -15.49 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.42 Total: -33.33 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.13 Total: -17.45 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.91 -9.07 -35.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471788052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.414 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds