Wall clock time and date at job start Tue Mar 31 2020 11:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35912 * 116.99785 * 2 1 4 4 C 1.38916 * 119.96881 * 0.02562 * 3 2 1 5 5 C 1.38295 * 120.29393 * 180.02562 * 4 3 2 6 6 C 1.37930 * 120.23788 * 359.97438 * 5 4 3 7 7 C 1.39868 * 119.93345 * 0.02562 * 6 5 4 8 8 C 1.47149 * 120.14410 * 180.02562 * 7 6 5 9 9 C 1.34975 * 119.99952 * 134.27932 * 8 7 6 10 10 C 1.46238 * 120.00152 * 348.74047 * 9 8 7 11 11 O 1.21754 * 119.99500 * 352.80980 * 10 9 8 12 12 N 1.34770 * 120.00104 * 173.08322 * 10 9 8 13 13 C 1.36722 * 119.99937 * 4.77481 * 12 10 9 14 14 H 1.07997 * 120.00012 * 34.90517 * 13 12 10 15 15 C 1.39125 * 119.99711 * 214.90295 * 13 12 10 16 16 N 1.31327 * 120.00080 * 6.89858 * 15 13 12 17 17 Si 1.86794 * 119.99944 * 186.89555 * 15 13 12 18 18 H 1.48502 * 109.47063 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47301 * 119.99834 * 17 15 13 20 20 H 1.48497 * 109.47613 * 240.00378 * 17 15 13 21 21 C 1.46499 * 120.00131 * 184.77122 * 12 10 9 22 22 C 1.54262 * 110.03002 * 61.69316 * 21 12 10 23 23 C 1.54968 * 104.15960 * 217.13735 * 22 21 12 24 24 C 1.54884 * 102.77481 * 37.89216 * 23 22 21 25 25 C 1.53877 * 110.03103 * 304.47901 * 21 12 10 26 26 C 1.38370 * 119.96853 * 180.28061 * 3 2 1 27 27 H 1.09000 * 109.46991 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46848 * 299.99326 * 1 2 3 29 29 H 1.08993 * 109.47280 * 59.99754 * 1 2 3 30 30 H 1.08001 * 119.85142 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.88311 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.03211 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.00286 * 314.26934 * 8 7 6 34 34 H 1.08002 * 120.00141 * 168.74693 * 9 8 7 35 35 H 0.96996 * 119.99805 * 184.99566 * 16 15 13 36 36 H 1.09002 * 110.02229 * 183.08884 * 21 12 10 37 37 H 1.08996 * 110.49189 * 335.78366 * 22 21 12 38 38 H 1.09000 * 110.48706 * 98.43281 * 22 21 12 39 39 H 1.09004 * 110.72218 * 279.57359 * 23 22 21 40 40 H 1.08999 * 110.91940 * 156.29735 * 23 22 21 41 41 H 1.09012 * 110.48149 * 203.40357 * 24 23 22 42 42 H 1.08999 * 110.60163 * 80.81893 * 24 23 22 43 43 H 1.09002 * 110.02881 * 238.56392 * 25 21 12 44 44 H 1.08995 * 110.03569 * 359.94728 * 25 21 12 45 45 H 1.07994 * 120.11914 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2887 2.3756 0.0005 5 6 1.9095 3.6114 0.0000 6 6 3.2862 3.6972 -0.0005 7 6 4.0581 2.5308 -0.0011 8 6 5.5271 2.6169 -0.0011 9 6 6.2486 1.8413 0.8354 10 6 5.5806 1.1019 1.9058 11 8 4.3973 1.2855 2.1259 12 7 6.2762 0.2212 2.6520 13 6 7.6254 0.0900 2.4743 14 1 8.2236 0.9537 2.2240 15 6 8.2278 -1.1561 2.6159 16 7 7.4878 -2.2276 2.7857 17 14 10.0891 -1.3049 2.5644 18 1 10.6878 0.0393 2.3645 19 1 10.5755 -1.8774 3.8454 20 1 10.4837 -2.1947 1.4430 21 6 5.5865 -0.5956 3.6538 22 6 4.5379 -1.4968 2.9698 23 6 3.3524 -1.5236 3.9675 24 6 3.3288 -0.0733 4.5104 25 6 4.8183 0.3090 4.6333 26 6 3.4278 1.2827 -0.0059 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 0.2104 2.3157 0.0014 31 1 1.3143 4.5126 0.0000 32 1 3.7675 4.6640 -0.0014 33 1 6.0280 3.3006 -0.6705 34 1 7.3192 1.7669 0.7144 35 1 7.9079 -3.0850 2.9568 36 1 6.3070 -1.2070 4.1971 37 1 4.2261 -1.0653 2.0187 38 1 4.9359 -2.5008 2.8221 39 1 3.5415 -2.2343 4.7721 40 1 2.4191 -1.7601 3.4566 41 1 2.8444 -0.0391 5.4864 42 1 2.8212 0.5901 3.8102 43 1 5.1654 0.1359 5.6519 44 1 4.9593 1.3557 4.3639 45 1 4.0174 0.3779 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491862040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:11 Heat of formation + Delta-G solvation = -28.901232 kcal Electronic energy + Delta-G solvation = -27758.994392 eV Core-core repulsion = 24128.132899 eV Total energy + Delta-G solvation = -3630.861493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.20118 -40.57960 -38.62211 -37.50020 -36.07710 -34.21093 -33.23437 -31.37011 -30.34111 -29.37711 -28.68347 -27.97700 -26.56211 -24.63484 -23.14443 -22.38102 -21.42175 -20.71919 -20.48191 -19.16402 -17.74866 -17.52812 -17.03259 -16.79155 -16.57806 -16.52701 -16.12893 -15.89545 -15.46894 -15.00695 -14.84454 -14.58165 -14.27907 -14.02325 -13.94874 -13.62636 -13.36121 -13.25046 -12.94570 -12.82720 -12.66930 -12.41233 -12.32274 -12.08723 -11.95954 -11.88693 -11.81750 -11.71619 -11.61929 -11.54190 -11.30562 -10.71246 -10.58062 -10.08724 -9.37357 -8.91048 -8.86572 -8.18257 -5.94442 0.01544 0.74062 1.11489 1.46443 1.48320 1.59545 2.33773 2.52654 2.72865 3.05717 3.18242 3.27418 3.97010 3.99097 4.02661 4.03396 4.17559 4.25446 4.35160 4.40853 4.42126 4.53754 4.65599 4.68221 4.71173 4.74855 4.82863 4.87632 4.92589 4.97565 5.00770 5.11342 5.21869 5.23524 5.27836 5.36521 5.46317 5.51725 5.55106 5.59795 5.64210 5.68573 5.78864 5.85325 6.07212 6.11562 6.59658 6.65009 7.22425 7.79446 8.22371 8.81025 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.005227 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.947338 B = 5355.101646 C = 6300.768822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.349 6.349 3 C 0.099 3.901 4 C -0.209 4.209 5 C -0.094 4.094 6 C -0.149 4.149 7 C -0.020 4.020 8 C -0.069 4.069 9 C -0.180 4.180 10 C 0.473 3.527 11 O -0.585 6.585 12 N -0.443 5.443 13 C -0.350 4.350 14 H 0.096 0.904 15 C -0.002 4.002 16 N -0.890 5.890 17 Si 0.984 3.016 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.284 1.284 21 C 0.164 3.836 22 C -0.095 4.095 23 C -0.111 4.111 24 C -0.097 4.097 25 C -0.120 4.120 26 C -0.089 4.089 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.134 0.866 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.197 7.240 -3.762 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.264 6.264 3 C 0.054 3.946 4 C -0.227 4.227 5 C -0.112 4.112 6 C -0.167 4.167 7 C -0.020 4.020 8 C -0.089 4.089 9 C -0.200 4.200 10 C 0.265 3.735 11 O -0.471 6.471 12 N -0.161 5.161 13 C -0.478 4.478 14 H 0.113 0.887 15 C -0.205 4.205 16 N -0.528 5.528 17 Si 0.808 3.192 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.210 1.210 21 C 0.059 3.941 22 C -0.133 4.133 23 C -0.149 4.149 24 C -0.134 4.134 25 C -0.158 4.158 26 C -0.109 4.109 27 H 0.130 0.870 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.183 0.817 34 H 0.151 0.849 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.643 6.882 -3.637 12.393 hybrid contribution 1.169 -0.676 0.130 1.356 sum -8.474 6.207 -3.507 11.074 Atomic orbital electron populations 1.23239 0.76878 1.04980 1.01994 1.86058 1.23289 1.27700 1.89332 1.18956 0.91976 0.84901 0.98746 1.21424 1.00466 0.91909 1.08949 1.21069 0.94431 0.97426 0.98266 1.21346 0.94142 0.97417 1.03803 1.18785 0.93369 0.92401 0.97445 1.22529 0.91741 0.96855 0.97735 1.23369 1.01180 0.98462 0.97015 1.18768 0.86540 0.83995 0.84243 1.90715 1.15367 1.69556 1.71498 1.43753 1.07326 1.34280 1.30692 1.19856 0.83187 0.94712 1.50042 0.88671 1.26217 1.03909 0.94332 0.96015 1.70018 1.36995 0.99585 1.46206 0.85004 0.77959 0.78715 0.77488 1.18166 1.20620 1.21027 1.21361 0.93010 0.90768 0.88930 1.22220 0.94948 0.98636 0.97540 1.22368 0.97369 0.96947 0.98186 1.22056 0.95410 0.96067 0.99912 1.22375 0.96332 0.99175 0.97957 1.20165 0.91630 0.96799 1.02275 0.87049 0.92348 0.91269 0.83689 0.82895 0.83918 0.81684 0.84856 0.92256 0.90231 0.95077 0.93395 0.91089 0.92107 0.91032 0.93084 0.92430 0.93870 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 16 2 O -0.35 -12.56 10.49 -92.56 -0.97 -13.53 16 3 C 0.10 3.65 6.68 22.46 0.15 3.80 16 4 C -0.21 -6.15 9.04 22.45 0.20 -5.95 16 5 C -0.09 -2.52 10.02 22.21 0.22 -2.30 16 6 C -0.15 -4.44 9.79 22.59 0.22 -4.22 16 7 C -0.02 -0.72 4.43 -20.16 -0.09 -0.81 16 8 C -0.07 -2.36 9.80 23.86 0.23 -2.12 16 9 C -0.18 -7.41 9.18 23.60 0.22 -7.19 16 10 C 0.47 22.94 5.48 86.32 0.47 23.42 16 11 O -0.58 -28.88 8.28 -4.52 -0.04 -28.92 16 12 N -0.44 -22.62 2.53 -614.36 -1.55 -24.17 16 13 C -0.35 -17.82 8.56 84.14 0.72 -17.10 16 14 H 0.10 4.60 6.68 -2.91 -0.02 4.58 16 15 C 0.00 -0.11 5.10 84.98 0.43 0.33 16 16 N -0.89 -47.15 10.18 21.69 0.22 -46.93 16 17 Si 0.98 39.83 29.56 68.60 2.03 41.86 16 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 21 C 0.16 8.05 2.27 45.72 0.10 8.15 16 22 C -0.09 -4.56 5.85 31.70 0.19 -4.37 16 23 C -0.11 -4.35 6.91 31.91 0.22 -4.13 16 24 C -0.10 -3.80 6.40 31.67 0.20 -3.60 16 25 C -0.12 -5.25 5.73 31.32 0.18 -5.07 16 26 C -0.09 -3.72 6.64 22.68 0.15 -3.57 16 27 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 1.24 7.65 -2.39 -0.02 1.23 16 29 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 30 H 0.15 3.30 6.28 -2.91 -0.02 3.28 16 31 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.17 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.13 5.24 6.50 -2.91 -0.02 5.22 16 35 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 36 H 0.08 4.25 6.02 -2.39 -0.01 4.24 16 37 H 0.03 1.65 6.61 -2.39 -0.02 1.64 16 38 H 0.05 2.42 7.56 -2.39 -0.02 2.40 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.05 2.23 7.15 -2.39 -0.02 2.21 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.04 2.04 6.70 -2.39 -0.02 2.03 16 45 H 0.08 3.87 7.26 -2.91 -0.02 3.85 16 Total: -1.00 -64.56 353.32 5.61 -58.95 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.99 Total: 35.82 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.94 Total: -23.09 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.33 Total: -71.10 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.01 Total: -42.44 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -64.56 5.61 -58.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491862040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.048 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds