Wall clock time and date at job start Tue Mar 31 2020 11:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35750 * 117.00158 * 2 1 4 4 C 1.39024 * 119.88244 * 180.02562 * 3 2 1 5 5 C 1.37655 * 120.11521 * 180.02562 * 4 3 2 6 6 C 1.40004 * 119.88046 * 359.97288 * 5 4 3 7 7 C 1.46951 * 120.11615 * 179.97438 * 6 5 4 8 8 C 1.35129 * 120.00272 * 133.81424 * 7 6 5 9 9 C 1.41807 * 119.99866 * 347.60000 * 8 7 6 10 10 O 1.21776 * 119.99764 * 353.47093 * 9 8 7 11 11 N 1.34776 * 119.99836 * 173.47167 * 9 8 7 12 12 C 1.36749 * 119.99934 * 184.71541 * 11 9 8 13 13 H 1.07998 * 119.99861 * 132.00319 * 12 11 9 14 14 C 1.39094 * 119.99923 * 312.00736 * 12 11 9 15 15 N 1.31344 * 119.99929 * 171.51252 * 14 12 11 16 16 Si 1.86796 * 120.00231 * 351.51474 * 14 12 11 17 17 H 1.48497 * 109.47272 * 95.49316 * 16 14 12 18 18 H 1.48497 * 109.47271 * 215.49604 * 16 14 12 19 19 H 1.48497 * 109.46939 * 335.49574 * 16 14 12 20 20 C 1.46493 * 120.00173 * 4.71538 * 11 9 8 21 21 C 1.55235 * 110.58379 * 229.25993 * 20 11 9 22 22 C 1.54888 * 102.58914 * 203.34050 * 21 20 11 23 23 C 1.54267 * 104.31501 * 37.92914 * 22 21 20 24 24 C 1.53876 * 106.59728 * 336.32543 * 23 22 21 25 25 C 1.40006 * 119.77086 * 0.25851 * 6 5 4 26 26 C 1.37655 * 119.87619 * 359.48902 * 25 6 5 27 27 H 1.08996 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46970 * 299.99758 * 1 2 3 29 29 H 1.09007 * 109.46942 * 59.99805 * 1 2 3 30 30 H 1.07995 * 119.94345 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.05756 * 179.97438 * 5 4 3 32 32 H 1.08003 * 119.99565 * 313.81229 * 7 6 5 33 33 H 1.08000 * 120.00108 * 167.60604 * 8 7 6 34 34 H 0.96997 * 120.00095 * 180.02562 * 15 14 12 35 35 H 1.09004 * 110.43629 * 351.84666 * 20 11 9 36 36 H 1.09001 * 110.90175 * 85.04673 * 21 20 11 37 37 H 1.09005 * 110.76399 * 321.56977 * 21 20 11 38 38 H 1.09004 * 110.48699 * 279.18156 * 22 21 20 39 39 H 1.09007 * 110.48656 * 156.67732 * 22 21 20 40 40 H 1.09002 * 110.02798 * 95.60949 * 23 22 21 41 41 H 1.08999 * 110.03516 * 216.98785 * 23 22 21 42 42 H 1.08997 * 110.02666 * 119.28219 * 24 23 22 43 43 H 1.08995 * 110.02728 * 240.66450 * 24 23 22 44 44 H 1.08000 * 120.06068 * 179.75402 * 25 6 5 45 45 H 1.08003 * 119.93813 * 180.25705 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.4338 1.2794 -0.0005 5 6 4.0638 2.5033 0.0000 6 6 3.3036 3.6790 0.0005 7 6 3.9707 4.9884 0.0016 8 6 3.5559 5.9588 -0.8423 9 6 2.6665 5.6450 -1.9013 10 8 2.3701 4.4850 -2.1238 11 7 2.1494 6.6305 -2.6613 12 6 1.2183 6.3382 -3.6193 13 1 0.3115 6.9209 -3.6866 14 6 1.4391 5.2903 -4.5069 15 7 0.4799 4.9014 -5.3155 16 14 3.0998 4.4360 -4.5489 17 1 3.0533 3.2213 -3.6961 18 1 3.4217 4.0482 -5.9458 19 1 4.1445 5.3596 -4.0383 20 6 2.5847 8.0149 -2.4613 21 6 1.3593 8.9605 -2.3419 22 6 1.9515 10.3333 -2.7466 23 6 2.9376 10.0024 -3.8859 24 6 3.3402 8.5283 -3.7045 25 6 1.9056 3.6030 0.0060 26 6 1.2858 2.3739 0.0001 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0192 0.3719 -0.0005 31 1 5.1425 2.5565 0.0000 32 1 4.7926 5.1751 0.6770 33 1 3.9018 6.9734 -0.7103 34 1 0.6338 4.1704 -5.9342 35 1 3.2134 8.0918 -1.5742 36 1 0.9871 8.9872 -1.3178 37 1 0.5713 8.6609 -3.0329 38 1 2.4779 10.7846 -1.9055 39 1 1.1648 10.9978 -3.1039 40 1 2.4520 10.1407 -4.8519 41 1 3.8175 10.6419 -3.8158 42 1 3.0499 7.9513 -4.5825 43 1 4.4159 8.4519 -3.5466 44 1 1.3147 4.5069 0.0104 45 1 0.2074 2.3141 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491882774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:16 Heat of formation + Delta-G solvation = -3.502966 kcal Electronic energy + Delta-G solvation = -27181.129507 eV Core-core repulsion = 23551.369365 eV Total energy + Delta-G solvation = -3629.760142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.93079 -39.34039 -37.62146 -36.64707 -33.84177 -32.84140 -31.82326 -30.60492 -29.00127 -28.22651 -27.14681 -27.01884 -25.22997 -22.80383 -21.92308 -20.94467 -20.21911 -19.80374 -18.52107 -17.85758 -17.13760 -16.34240 -15.79008 -15.45765 -15.42799 -14.97984 -14.65165 -14.24104 -13.95791 -13.64001 -13.46546 -13.16940 -13.06960 -12.87210 -12.77231 -12.42809 -12.13862 -12.01779 -11.72660 -11.56185 -11.19153 -11.08166 -10.84616 -10.81282 -10.69805 -10.55558 -10.42452 -10.19280 -9.98473 -9.85352 -9.77915 -9.06040 -8.61684 -8.52739 -8.31748 -7.48087 -7.13371 -6.14399 -3.99978 1.29139 1.94515 2.37239 3.50501 3.56348 3.57215 3.80495 4.30859 4.35286 4.51216 4.69542 5.07680 5.10329 5.15144 5.16795 5.24371 5.30263 5.32697 5.38032 5.40940 5.58632 5.61047 5.66719 5.79848 5.87040 5.92338 5.95469 6.00861 6.05147 6.11563 6.17023 6.29355 6.29605 6.44342 6.47996 6.53244 6.66619 6.70443 6.80795 6.81964 6.94165 6.96734 7.16741 7.19944 7.77203 7.84620 8.06462 8.79283 8.95544 9.41611 9.84560 10.86015 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.004764 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.157195 B = 5876.575764 C = 6480.382193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.324 6.324 3 C 0.125 3.875 4 C -0.168 4.168 5 C -0.073 4.073 6 C -0.083 4.083 7 C -0.057 4.057 8 C -0.196 4.196 9 C 0.467 3.533 10 O -0.534 6.534 11 N -0.446 5.446 12 C -0.331 4.331 13 H 0.096 0.904 14 C 0.084 3.916 15 N -0.872 5.872 16 Si 0.941 3.059 17 H -0.258 1.258 18 H -0.326 1.326 19 H -0.289 1.289 20 C 0.123 3.877 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.135 4.135 25 C 0.008 3.992 26 C -0.211 4.211 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.272 0.728 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 2.252 11.024 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.080 3.920 4 C -0.187 4.187 5 C -0.091 4.091 6 C -0.083 4.083 7 C -0.078 4.078 8 C -0.216 4.216 9 C 0.261 3.739 10 O -0.421 6.421 11 N -0.165 5.165 12 C -0.458 4.458 13 H 0.113 0.887 14 C -0.125 4.125 15 N -0.507 5.507 16 Si 0.777 3.223 17 H -0.184 1.184 18 H -0.258 1.258 19 H -0.215 1.215 20 C 0.019 3.981 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.173 4.173 25 C -0.011 4.011 26 C -0.230 4.230 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.320 1.417 10.738 11.661 hybrid contribution 0.557 -0.041 -0.413 0.695 sum 4.877 1.376 10.324 11.501 Atomic orbital electron populations 1.22995 0.78826 1.03251 1.01571 1.85954 1.21120 1.27658 1.89004 1.19089 0.92256 0.83760 0.96890 1.20051 0.91111 0.98087 1.09405 1.20861 0.98866 0.90989 0.98362 1.18688 0.93214 0.92536 1.03903 1.22105 0.96577 0.91823 0.97260 1.22457 1.01952 0.99286 0.97928 1.17229 0.85740 0.86843 0.84084 1.90624 1.62727 1.18423 1.70277 1.43739 1.36945 1.04316 1.31509 1.18749 0.99134 1.18162 1.09733 0.88666 1.25517 0.98280 0.95738 0.92918 1.69660 1.32818 1.26732 1.21510 0.85712 0.81636 0.81700 0.73295 1.18426 1.25848 1.21509 1.22203 0.95008 0.84013 0.96908 1.22820 0.98814 0.93628 1.01338 1.22288 0.98357 0.97342 0.97968 1.22041 0.98403 0.96242 0.98891 1.22471 0.98748 0.95590 1.00493 1.20846 0.93190 0.96604 0.90419 1.20981 0.99536 0.92328 1.10137 0.88771 0.92915 0.92435 0.86077 0.86095 0.85852 0.86047 0.91879 0.90326 0.92277 0.89499 0.92299 0.92094 0.91957 0.92668 0.89868 0.92857 0.86379 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.37 10.49 -18.96 -0.20 -5.57 16 3 C 0.12 2.27 6.70 -39.00 -0.26 2.01 16 4 C -0.17 -2.91 9.97 -39.50 -0.39 -3.31 16 5 C -0.07 -1.24 9.79 -39.13 -0.38 -1.63 16 6 C -0.08 -1.54 4.34 -105.04 -0.46 -1.99 16 7 C -0.06 -0.93 9.78 -37.16 -0.36 -1.29 16 8 C -0.20 -3.55 9.07 -39.32 -0.36 -3.91 16 9 C 0.47 10.75 4.74 -14.90 -0.07 10.68 16 10 O -0.53 -14.00 7.33 5.12 0.04 -13.96 16 11 N -0.45 -10.29 2.16 -108.93 -0.24 -10.53 16 12 C -0.33 -8.96 8.26 -15.04 -0.12 -9.08 16 13 H 0.10 2.71 6.62 -52.49 -0.35 2.36 16 14 C 0.08 2.44 5.13 -17.44 -0.09 2.35 16 15 N -0.87 -26.42 13.95 55.50 0.77 -25.65 16 16 Si 0.94 25.87 24.30 -169.99 -4.13 21.74 16 17 H -0.26 -7.57 6.40 56.52 0.36 -7.21 16 18 H -0.33 -8.98 7.11 56.52 0.40 -8.58 16 19 H -0.29 -7.70 6.85 56.52 0.39 -7.32 16 20 C 0.12 2.25 3.13 -66.09 -0.21 2.04 16 21 C -0.13 -2.10 6.39 -24.55 -0.16 -2.26 16 22 C -0.12 -1.63 6.82 -25.07 -0.17 -1.80 16 23 C -0.12 -1.68 6.80 -25.61 -0.17 -1.85 16 24 C -0.13 -2.37 6.44 -25.61 -0.16 -2.53 16 25 C 0.01 0.15 6.78 -39.13 -0.27 -0.11 16 26 C -0.21 -3.93 9.01 -39.50 -0.36 -4.29 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 29 H 0.06 0.78 7.65 -51.93 -0.40 0.38 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.12 1.82 5.73 -52.49 -0.30 1.52 16 34 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 35 H 0.08 1.25 5.29 -51.93 -0.27 0.97 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.66 6.22 -51.93 -0.32 1.34 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.75 7.35 -51.93 -0.38 1.37 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.12 2.35 7.35 -52.49 -0.39 1.96 16 45 H 0.12 2.04 6.27 -52.48 -0.33 1.71 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -33.50 351.15 -8.02 -41.52 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.56 Total: 2.76 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -3.00 Total: -15.61 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.54 Total: -36.18 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.16 Total: -19.52 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -4.13 Total: 21.74 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.50 -8.02 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491882774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.020 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds