Wall clock time and date at job start Tue Mar 31 2020 11:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35905 * 116.99550 * 2 1 4 4 C 1.38899 * 119.97342 * 359.97417 * 3 2 1 5 5 C 1.38292 * 120.28953 * 180.02562 * 4 3 2 6 6 C 1.37945 * 120.23207 * 359.74623 * 5 4 3 7 7 C 1.39826 * 119.93622 * 0.53068 * 6 5 4 8 8 C 1.47220 * 120.14413 * 179.74909 * 7 6 5 9 9 C 1.34806 * 119.99438 * 316.09915 * 8 7 6 10 10 C 1.46425 * 120.00195 * 349.03411 * 9 8 7 11 11 O 1.21701 * 120.00125 * 353.22080 * 10 9 8 12 12 N 1.34781 * 119.99955 * 173.21980 * 10 9 8 13 13 C 1.46497 * 120.00079 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.01698 * 325.69484 * 13 12 10 15 15 C 1.53876 * 110.03483 * 87.08976 * 13 12 10 16 16 C 1.54265 * 106.59754 * 119.33389 * 15 13 12 17 17 C 1.54889 * 104.19756 * 23.60974 * 16 15 13 18 18 H 1.09000 * 110.75792 * 80.55308 * 17 16 15 19 19 C 1.50702 * 110.76001 * 203.74125 * 17 16 15 20 20 H 1.08001 * 119.99775 * 118.53873 * 19 17 16 21 21 C 1.37872 * 119.99871 * 298.55003 * 19 17 16 22 22 N 1.31515 * 120.00381 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00022 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46965 * 89.99796 * 23 21 19 25 25 H 1.48500 * 109.47334 * 209.99802 * 23 21 19 26 26 H 1.48501 * 109.47112 * 330.00119 * 23 21 19 27 27 C 1.54273 * 110.07240 * 204.28399 * 13 12 10 28 28 C 1.38389 * 119.96986 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47078 * 300.00137 * 1 2 3 30 30 H 1.08995 * 109.47420 * 60.00728 * 1 2 3 31 31 H 1.09006 * 109.46827 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.85556 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.87993 * 180.02562 * 5 4 3 34 34 H 1.08000 * 120.03138 * 180.25474 * 6 5 4 35 35 H 1.07997 * 119.99983 * 136.10306 * 8 7 6 36 36 H 1.08001 * 119.99269 * 169.03451 * 9 8 7 37 37 H 0.97001 * 119.99774 * 359.97438 * 12 10 9 38 38 H 1.09000 * 110.02891 * 238.61591 * 15 13 12 39 39 H 1.08996 * 110.03054 * 359.97438 * 15 13 12 40 40 H 1.08998 * 110.48839 * 142.28645 * 16 15 13 41 41 H 1.08998 * 110.48801 * 264.93255 * 16 15 13 42 42 H 0.96995 * 120.00682 * 179.97438 * 22 21 19 43 43 H 1.09000 * 110.48270 * 335.75708 * 27 13 12 44 44 H 1.09001 * 110.48847 * 98.40330 * 27 13 12 45 45 H 1.07996 * 120.11039 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2888 2.3755 -0.0005 5 6 1.9097 3.6111 -0.0011 6 6 3.2865 3.6966 0.0042 7 6 4.0581 2.5305 -0.0011 8 6 5.5278 2.6165 -0.0011 9 6 6.1512 3.4992 -0.8069 10 6 5.3970 4.1990 -1.8487 11 8 4.2392 3.8958 -2.0694 12 7 5.9849 5.1789 -2.5633 13 6 5.2301 5.8795 -3.6052 14 1 4.5358 5.1924 -4.0888 15 6 4.4603 7.0629 -2.9931 16 6 4.9861 8.3366 -3.6865 17 6 5.5506 7.8288 -5.0365 18 1 4.7488 7.6840 -5.7605 19 6 6.5873 8.7813 -5.5742 20 1 7.6032 8.4463 -5.7223 21 6 6.2387 10.0805 -5.8767 22 7 5.0015 10.4884 -5.6967 23 14 7.5238 11.2614 -6.5425 24 1 7.5457 11.1845 -8.0254 25 1 7.1881 12.6460 -6.1236 26 1 8.8593 10.8925 -6.0080 27 6 6.1969 6.4755 -4.6493 28 6 3.4280 1.2828 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2105 2.3156 -0.0005 33 1 1.3146 4.5124 -0.0011 34 1 3.7680 4.6633 0.0079 35 1 6.1063 1.9723 0.6444 36 1 7.2071 3.6901 -0.6841 37 1 6.9076 5.4208 -2.3871 38 1 3.3923 6.9500 -3.1796 39 1 4.6479 7.1156 -1.9207 40 1 4.1730 9.0428 -3.8545 41 1 5.7753 8.7966 -3.0918 42 1 4.7563 11.4025 -5.9092 43 1 7.1817 6.6348 -4.2101 44 1 6.2674 5.8235 -5.5200 45 1 4.0175 0.3779 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493430353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:31 Heat of formation + Delta-G solvation = -32.655829 kcal Electronic energy + Delta-G solvation = -25557.127376 eV Core-core repulsion = 21926.103071 eV Total energy + Delta-G solvation = -3631.024305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.30123 -39.54726 -37.72897 -36.78912 -33.72286 -33.54185 -31.96563 -30.78767 -29.34838 -28.15991 -27.45721 -27.04250 -24.29730 -23.36598 -22.51105 -21.47476 -19.91087 -19.34270 -18.99618 -17.91335 -16.80670 -16.42352 -16.26811 -16.02816 -15.83230 -15.25488 -14.83539 -14.59807 -14.46478 -13.85271 -13.78600 -13.71474 -13.35483 -12.96032 -12.64688 -12.53669 -12.32413 -12.05028 -11.78481 -11.61530 -11.24223 -11.08391 -10.99426 -10.94570 -10.89419 -10.58726 -10.28227 -9.96278 -9.87277 -9.54727 -9.51957 -9.21353 -8.81764 -8.69381 -8.44015 -8.36496 -7.82417 -6.01576 -4.05214 0.68535 1.55205 1.86735 3.17307 3.29352 3.36458 3.38616 3.50135 3.58770 3.88343 4.42752 4.62283 4.75932 4.89377 4.95152 4.98244 5.04281 5.22993 5.25636 5.30473 5.31250 5.47464 5.55569 5.61767 5.67682 5.83797 5.91495 6.01532 6.14074 6.29819 6.33367 6.37530 6.48775 6.59718 6.66229 6.67522 6.75151 6.75432 6.91330 6.95314 7.26934 7.33627 7.35924 7.71409 7.86260 7.89311 8.02179 8.41842 8.54885 8.96930 9.59027 11.07505 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.027932 B = 0.002470 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.207447 B =11331.832186 C =11868.792467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.108 3.892 4 C -0.197 4.197 5 C -0.092 4.092 6 C -0.067 4.067 7 C -0.030 4.030 8 C -0.035 4.035 9 C -0.200 4.200 10 C 0.529 3.471 11 O -0.530 6.530 12 N -0.712 5.712 13 C 0.139 3.861 14 H 0.079 0.921 15 C -0.132 4.132 16 C -0.100 4.100 17 C 0.052 3.948 18 H 0.031 0.969 19 C -0.514 4.514 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.890 3.110 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.121 4.121 28 C -0.133 4.133 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.397 0.603 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -17.407 14.451 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.064 3.936 4 C -0.216 4.216 5 C -0.111 4.111 6 C -0.085 4.085 7 C -0.030 4.030 8 C -0.054 4.054 9 C -0.221 4.221 10 C 0.317 3.683 11 O -0.409 6.409 12 N -0.361 5.361 13 C 0.035 3.965 14 H 0.097 0.903 15 C -0.171 4.171 16 C -0.138 4.138 17 C 0.033 3.967 18 H 0.050 0.950 19 C -0.553 4.553 20 H 0.073 0.927 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.718 3.282 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.160 4.160 28 C -0.151 4.151 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.231 0.769 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.431 -17.631 14.241 23.093 hybrid contribution 0.919 1.064 -0.406 1.464 sum -3.511 -16.567 13.836 21.868 Atomic orbital electron populations 1.22997 0.78745 1.03563 1.01290 1.86031 1.21099 1.27180 1.89350 1.18739 0.92106 0.83971 0.98790 1.21214 0.99594 0.92453 1.08319 1.20735 0.94583 0.96768 0.98987 1.20975 0.93364 0.97157 0.97019 1.18604 0.92485 0.92551 0.99381 1.22305 0.92684 0.94634 0.95799 1.23140 1.00824 1.00165 0.97964 1.18476 0.87026 0.80096 0.82737 1.90889 1.16572 1.65457 1.67996 1.46339 1.16224 1.36215 1.37355 1.21844 0.94055 0.93104 0.87507 0.90266 1.22632 0.99062 0.96546 0.98876 1.22301 1.00028 0.94297 0.97201 1.19545 0.95033 0.89101 0.93047 0.95043 1.21096 0.95655 0.95456 1.43054 0.92669 1.24977 0.95205 0.98256 0.95490 1.69957 1.17054 1.17340 1.48332 0.86640 0.81945 0.80412 0.79240 1.20739 1.21306 1.19984 1.22759 0.97835 0.99298 0.96063 1.20340 0.91335 0.97326 1.06143 0.92863 0.92728 0.88527 0.85999 0.86033 0.86599 0.84615 0.84908 0.76905 0.92713 0.93307 0.91282 0.93534 0.93063 0.92092 0.92943 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.81 10.49 -19.44 -0.20 -4.01 16 3 C 0.11 1.40 6.68 -39.28 -0.26 1.14 16 4 C -0.20 -2.43 9.04 -39.32 -0.36 -2.79 16 5 C -0.09 -1.22 10.02 -39.67 -0.40 -1.62 16 6 C -0.07 -0.93 6.60 -39.10 -0.26 -1.19 16 7 C -0.03 -0.39 4.53 -105.08 -0.48 -0.86 16 8 C -0.03 -0.36 9.81 -37.15 -0.36 -0.72 16 9 C -0.20 -2.18 9.91 -37.50 -0.37 -2.56 16 10 C 0.53 7.82 6.78 -12.96 -0.09 7.73 16 11 O -0.53 -9.51 11.82 5.19 0.06 -9.45 16 12 N -0.71 -10.50 4.98 -54.10 -0.27 -10.77 16 13 C 0.14 2.49 3.23 -66.81 -0.22 2.28 16 14 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 15 C -0.13 -2.55 6.59 -25.61 -0.17 -2.72 16 16 C -0.10 -2.28 5.57 -25.07 -0.14 -2.42 16 17 C 0.05 1.24 2.82 -89.78 -0.25 0.99 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.51 -13.73 8.54 -34.44 -0.29 -14.03 16 20 H 0.06 1.45 7.78 -52.49 -0.41 1.04 16 21 C 0.06 1.70 5.33 -17.82 -0.10 1.61 16 22 N -0.89 -25.21 12.02 55.43 0.67 -24.54 16 23 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.12 -2.38 5.94 -25.07 -0.15 -2.53 16 28 C -0.13 -1.69 9.73 -38.95 -0.38 -2.07 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.12 1.21 6.28 -52.49 -0.33 0.88 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.65 7.03 -52.49 -0.37 1.29 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.40 4.90 8.33 -40.82 -0.34 4.56 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.88 7.92 -51.93 -0.41 0.47 16 40 H 0.07 1.74 7.37 -51.93 -0.38 1.35 16 41 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.06 1.14 7.63 -51.93 -0.40 0.75 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -31.45 367.50 -9.27 -40.72 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.76 Total: 5.13 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -3.28 Total: -18.54 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.40 Total: -35.32 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.14 Total: -13.47 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.45 -9.27 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493430353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.061 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds