Wall clock time and date at job start Tue Mar 31 2020 11:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35905 * 116.99550 * 2 1 4 4 C 1.38899 * 119.97342 * 359.97417 * 3 2 1 5 5 C 1.38292 * 120.28953 * 180.02562 * 4 3 2 6 6 C 1.37945 * 120.23207 * 359.74623 * 5 4 3 7 7 C 1.39826 * 119.93622 * 0.53068 * 6 5 4 8 8 C 1.47220 * 120.14413 * 179.74909 * 7 6 5 9 9 C 1.34806 * 119.99438 * 316.09915 * 8 7 6 10 10 C 1.46425 * 120.00195 * 349.03411 * 9 8 7 11 11 O 1.21701 * 120.00125 * 353.22080 * 10 9 8 12 12 N 1.34781 * 119.99955 * 173.21980 * 10 9 8 13 13 C 1.46497 * 120.00079 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.01698 * 325.69484 * 13 12 10 15 15 C 1.53876 * 110.03483 * 87.08976 * 13 12 10 16 16 C 1.54265 * 106.59754 * 119.33389 * 15 13 12 17 17 C 1.54889 * 104.19756 * 23.60974 * 16 15 13 18 18 H 1.09000 * 110.75792 * 80.55308 * 17 16 15 19 19 C 1.50702 * 110.76001 * 203.74125 * 17 16 15 20 20 H 1.08001 * 119.99775 * 118.53873 * 19 17 16 21 21 C 1.37872 * 119.99871 * 298.55003 * 19 17 16 22 22 N 1.31515 * 120.00381 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00022 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46965 * 89.99796 * 23 21 19 25 25 H 1.48500 * 109.47334 * 209.99802 * 23 21 19 26 26 H 1.48501 * 109.47112 * 330.00119 * 23 21 19 27 27 C 1.54273 * 110.07240 * 204.28399 * 13 12 10 28 28 C 1.38389 * 119.96986 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47078 * 300.00137 * 1 2 3 30 30 H 1.08995 * 109.47420 * 60.00728 * 1 2 3 31 31 H 1.09006 * 109.46827 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.85556 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.87993 * 180.02562 * 5 4 3 34 34 H 1.08000 * 120.03138 * 180.25474 * 6 5 4 35 35 H 1.07997 * 119.99983 * 136.10306 * 8 7 6 36 36 H 1.08001 * 119.99269 * 169.03451 * 9 8 7 37 37 H 0.97001 * 119.99774 * 359.97438 * 12 10 9 38 38 H 1.09000 * 110.02891 * 238.61591 * 15 13 12 39 39 H 1.08996 * 110.03054 * 359.97438 * 15 13 12 40 40 H 1.08998 * 110.48839 * 142.28645 * 16 15 13 41 41 H 1.08998 * 110.48801 * 264.93255 * 16 15 13 42 42 H 0.96995 * 120.00682 * 179.97438 * 22 21 19 43 43 H 1.09000 * 110.48270 * 335.75708 * 27 13 12 44 44 H 1.09001 * 110.48847 * 98.40330 * 27 13 12 45 45 H 1.07996 * 120.11039 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2888 2.3755 -0.0005 5 6 1.9097 3.6111 -0.0011 6 6 3.2865 3.6966 0.0042 7 6 4.0581 2.5305 -0.0011 8 6 5.5278 2.6165 -0.0011 9 6 6.1512 3.4992 -0.8069 10 6 5.3970 4.1990 -1.8487 11 8 4.2392 3.8958 -2.0694 12 7 5.9849 5.1789 -2.5633 13 6 5.2301 5.8795 -3.6052 14 1 4.5358 5.1924 -4.0888 15 6 4.4603 7.0629 -2.9931 16 6 4.9861 8.3366 -3.6865 17 6 5.5506 7.8288 -5.0365 18 1 4.7488 7.6840 -5.7605 19 6 6.5873 8.7813 -5.5742 20 1 7.6032 8.4463 -5.7223 21 6 6.2387 10.0805 -5.8767 22 7 5.0015 10.4884 -5.6967 23 14 7.5238 11.2614 -6.5425 24 1 7.5457 11.1845 -8.0254 25 1 7.1881 12.6460 -6.1236 26 1 8.8593 10.8925 -6.0080 27 6 6.1969 6.4755 -4.6493 28 6 3.4280 1.2828 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2105 2.3156 -0.0005 33 1 1.3146 4.5124 -0.0011 34 1 3.7680 4.6633 0.0079 35 1 6.1063 1.9723 0.6444 36 1 7.2071 3.6901 -0.6841 37 1 6.9076 5.4208 -2.3871 38 1 3.3923 6.9500 -3.1796 39 1 4.6479 7.1156 -1.9207 40 1 4.1730 9.0428 -3.8545 41 1 5.7753 8.7966 -3.0918 42 1 4.7563 11.4025 -5.9092 43 1 7.1817 6.6348 -4.2101 44 1 6.2674 5.8235 -5.5200 45 1 4.0175 0.3779 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493430353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:31 Heat of formation + Delta-G solvation = -50.660111 kcal Electronic energy + Delta-G solvation = -25557.908100 eV Core-core repulsion = 21926.103071 eV Total energy + Delta-G solvation = -3631.805029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30649 -40.63154 -38.99461 -38.02867 -35.25707 -34.53779 -33.74330 -31.70012 -30.38131 -29.91553 -28.68501 -28.10800 -25.99937 -24.59266 -23.45838 -22.53180 -21.43998 -20.86068 -20.29833 -18.91673 -18.48286 -17.67141 -17.18173 -17.00142 -16.65903 -16.61630 -16.59914 -16.12177 -15.62249 -15.12797 -14.88268 -14.67180 -14.46931 -14.23172 -14.01570 -13.76393 -13.60496 -13.38805 -13.01405 -12.80478 -12.79762 -12.61813 -12.46894 -12.37697 -12.13067 -11.97493 -11.78533 -11.65375 -11.37473 -11.08367 -10.81366 -10.78751 -10.65372 -10.45993 -9.92583 -9.45145 -8.79488 -8.09577 -6.20182 -0.21457 0.57704 0.94711 1.43187 1.44088 1.53847 2.38235 2.39571 2.45594 2.47338 2.93135 3.21200 3.78738 3.87207 3.91287 4.05193 4.09081 4.15822 4.21882 4.30161 4.34615 4.38671 4.49040 4.58993 4.70019 4.71572 4.76317 4.79870 4.92836 5.02685 5.04780 5.07953 5.16341 5.16739 5.29037 5.33663 5.36847 5.42311 5.53608 5.66767 5.71180 5.74882 5.84156 5.94855 6.00102 6.37663 6.49415 6.75635 6.90733 7.42583 7.47800 8.98864 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.027932 B = 0.002470 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.207447 B =11331.832186 C =11868.792467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.099 3.901 4 C -0.204 4.204 5 C -0.108 4.108 6 C -0.085 4.085 7 C -0.041 4.041 8 C -0.025 4.025 9 C -0.203 4.203 10 C 0.523 3.477 11 O -0.566 6.566 12 N -0.705 5.705 13 C 0.154 3.846 14 H 0.066 0.934 15 C -0.120 4.120 16 C -0.089 4.089 17 C 0.040 3.960 18 H -0.003 1.003 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.264 1.264 27 C -0.107 4.107 28 C -0.145 4.145 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.178 0.822 36 H 0.172 0.828 37 H 0.412 0.588 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.259 0.741 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -18.979 15.652 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.054 3.946 4 C -0.223 4.223 5 C -0.127 4.127 6 C -0.104 4.104 7 C -0.041 4.041 8 C -0.044 4.044 9 C -0.223 4.223 10 C 0.313 3.687 11 O -0.447 6.447 12 N -0.356 5.356 13 C 0.049 3.951 14 H 0.084 0.916 15 C -0.159 4.159 16 C -0.127 4.127 17 C 0.021 3.979 18 H 0.015 0.985 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.189 4.189 22 N -0.560 5.560 23 Si 0.780 3.220 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.188 1.188 27 C -0.145 4.145 28 C -0.164 4.164 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.195 0.805 36 H 0.190 0.810 37 H 0.248 0.752 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.629 -19.219 15.456 24.803 hybrid contribution 0.248 1.499 -0.782 1.709 sum -2.381 -17.720 14.674 23.130 Atomic orbital electron populations 1.23288 0.76817 1.05438 1.01892 1.86013 1.23165 1.26695 1.89192 1.18974 0.92598 0.84518 0.98516 1.21430 1.00709 0.92057 1.08103 1.20956 0.94814 0.97563 0.99325 1.21024 0.93861 0.97243 0.98268 1.18935 0.94152 0.92205 0.98785 1.22703 0.91469 0.94439 0.95799 1.23220 1.02274 0.99807 0.97040 1.19173 0.86809 0.79611 0.83058 1.90888 1.18366 1.66418 1.69046 1.46137 1.16713 1.36159 1.36621 1.21377 0.93514 0.92332 0.87897 0.91627 1.22482 0.98695 0.95337 0.99351 1.22066 0.98596 0.95118 0.96959 1.19531 0.94097 0.91549 0.92737 0.98500 1.21487 0.96268 0.96084 1.42780 0.92251 1.25791 0.97059 1.00108 0.95932 1.70102 1.18899 1.17603 1.49441 0.85615 0.79831 0.78038 0.78518 1.20432 1.21299 1.18786 1.22560 0.98346 0.96771 0.96866 1.20628 0.91709 0.97919 1.06117 0.91725 0.92623 0.86116 0.84106 0.85429 0.87652 0.80518 0.81041 0.75156 0.93483 0.91886 0.94497 0.94273 0.93218 0.90641 0.92371 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -7.55 10.49 -92.48 -0.97 -8.52 16 3 C 0.10 2.47 6.68 22.46 0.15 2.62 16 4 C -0.20 -4.97 9.04 22.44 0.20 -4.77 16 5 C -0.11 -2.88 10.02 22.21 0.22 -2.66 16 6 C -0.09 -2.37 6.60 22.58 0.15 -2.22 16 7 C -0.04 -1.00 4.53 -20.16 -0.09 -1.09 16 8 C -0.02 -0.44 9.81 23.84 0.23 -0.21 16 9 C -0.20 -3.77 9.91 23.61 0.23 -3.54 16 10 C 0.52 14.60 6.78 86.37 0.59 15.18 16 11 O -0.57 -20.06 11.82 -4.35 -0.05 -20.11 16 12 N -0.71 -19.50 4.98 -443.30 -2.21 -21.71 16 13 C 0.15 5.46 3.23 45.72 0.15 5.60 16 14 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 15 C -0.12 -4.65 6.59 31.32 0.21 -4.45 16 16 C -0.09 -4.17 5.57 31.67 0.18 -4.00 16 17 C 0.04 1.96 2.82 -10.25 -0.03 1.93 16 18 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 19 C -0.53 -28.37 8.54 25.60 0.22 -28.16 16 20 H 0.06 3.07 7.78 -2.91 -0.02 3.04 16 21 C 0.01 0.53 5.33 84.65 0.45 0.98 16 22 N -0.92 -53.66 12.02 21.45 0.26 -53.41 16 23 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 27 C -0.11 -4.14 5.94 31.67 0.19 -3.95 16 28 C -0.15 -3.53 9.73 22.68 0.22 -3.31 16 29 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 30 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.14 2.70 6.28 -2.91 -0.02 2.68 16 33 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.11 3.04 7.03 -2.91 -0.02 3.02 16 35 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.41 8.98 8.33 -92.71 -0.77 8.20 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 2.25 7.92 -2.39 -0.02 2.23 16 40 H 0.04 1.93 7.37 -2.39 -0.02 1.92 16 41 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 42 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.08 2.69 7.63 -2.39 -0.02 2.67 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -69.99 367.50 3.65 -66.34 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.22 Total: 22.94 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 4.38 Total: -30.62 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.95 Total: -75.11 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.02 Total: -28.63 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -69.99 3.65 -66.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493430353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.679 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds