Wall clock time and date at job start Tue Mar 31 2020 11:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00698 * 2 1 4 4 C 1.52991 * 109.47733 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46976 * 64.99758 * 4 3 2 6 6 C 1.36714 * 119.99680 * 90.00248 * 5 4 3 7 7 H 1.08004 * 120.00121 * 308.91310 * 6 5 4 8 8 C 1.39131 * 120.00161 * 128.91496 * 6 5 4 9 9 N 1.31321 * 120.00100 * 161.50939 * 8 6 5 10 10 Si 1.86801 * 119.99731 * 341.51434 * 8 6 5 11 11 H 1.48500 * 109.47494 * 95.25094 * 10 8 6 12 12 H 1.48497 * 109.46766 * 215.25299 * 10 8 6 13 13 H 1.48502 * 109.47200 * 335.25023 * 10 8 6 14 14 C 1.34769 * 120.00025 * 269.72573 * 5 4 3 15 15 O 1.21763 * 120.00146 * 3.88842 * 14 5 4 16 16 C 1.46232 * 119.99944 * 183.89170 * 14 5 4 17 17 C 1.34977 * 120.00094 * 174.27434 * 16 14 5 18 18 C 1.47148 * 120.00239 * 184.66141 * 17 16 14 19 19 C 1.39872 * 120.16832 * 2.78088 * 18 17 16 20 20 C 1.37884 * 119.81834 * 179.72321 * 19 18 17 21 21 C 1.38417 * 120.17449 * 0.54616 * 20 19 18 22 22 C 1.50700 * 119.82351 * 179.74430 * 21 20 19 23 23 C 1.53002 * 117.49911 * 8.60721 * 22 21 20 24 24 C 1.52999 * 117.49719 * 299.98267 * 22 21 20 25 25 C 1.38406 * 120.35005 * 359.72647 * 21 20 19 26 26 C 1.37878 * 120.17592 * 359.97438 * 25 21 20 27 27 H 1.09004 * 109.46856 * 300.00087 * 1 2 3 28 28 H 1.09002 * 109.47423 * 59.99913 * 1 2 3 29 29 H 1.09004 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46665 * 59.99597 * 3 2 1 31 31 H 1.09004 * 109.46619 * 300.00291 * 3 2 1 32 32 H 1.09003 * 109.47187 * 305.00161 * 4 3 2 33 33 H 1.09002 * 109.47645 * 184.99856 * 4 3 2 34 34 H 0.96996 * 119.99535 * 180.02562 * 9 8 6 35 35 H 1.08002 * 119.99847 * 354.26856 * 16 14 5 36 36 H 1.08007 * 119.99882 * 4.66099 * 17 16 14 37 37 H 1.08001 * 120.09208 * 359.97077 * 19 18 17 38 38 H 1.08004 * 119.91262 * 180.29610 * 20 19 18 39 39 H 1.08994 * 115.54592 * 154.30895 * 22 21 20 40 40 H 1.09000 * 117.49597 * 359.97438 * 23 22 21 41 41 H 1.08994 * 117.49948 * 145.01624 * 23 22 21 42 42 H 1.08999 * 117.49025 * 214.97567 * 24 22 21 43 43 H 1.08990 * 117.50029 * 359.97438 * 24 22 21 44 44 H 1.08003 * 119.91312 * 179.97438 * 25 21 20 45 45 H 1.08000 * 120.08822 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.2675 1.3438 -2.3354 7 1 3.5582 2.0848 -2.6734 8 6 5.4771 1.1830 -3.0036 9 7 5.6192 1.6449 -4.2247 10 14 6.8991 0.3098 -2.1640 11 1 6.9032 -1.1219 -2.5583 12 1 8.1792 0.9402 -2.5752 13 1 6.7453 0.4170 -0.6908 14 6 4.1011 -0.7758 -1.3314 15 8 3.7796 -1.4749 -0.3878 16 6 4.6224 -1.3896 -2.5520 17 6 4.8560 -2.7183 -2.5926 18 6 5.4760 -3.3204 -3.7836 19 6 5.8777 -2.5116 -4.8518 20 6 6.4632 -3.0828 -5.9618 21 6 6.6433 -4.4537 -6.0257 22 6 7.2788 -5.0701 -7.2452 23 6 7.8829 -4.1218 -8.2827 24 6 6.5784 -4.8602 -8.5891 25 6 6.2433 -5.2612 -4.9752 26 6 5.6620 -4.7048 -3.8556 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 6.4625 1.5324 -4.6906 35 1 4.8204 -0.7797 -3.4211 36 1 4.5879 -3.3397 -1.7509 37 1 5.7335 -1.4423 -4.8055 38 1 6.7783 -2.4592 -6.7854 39 1 7.7803 -6.0241 -7.0825 40 1 7.8204 -3.0520 -8.0834 41 1 8.7822 -4.4517 -8.8028 42 1 6.6195 -5.6761 -9.3108 43 1 5.6578 -4.2767 -8.5912 44 1 6.3868 -6.3301 -5.0327 45 1 5.3500 -5.3363 -3.0370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493570206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:31 Heat of formation + Delta-G solvation = 2.218868 kcal Electronic energy + Delta-G solvation = -26103.918265 eV Core-core repulsion = 22474.406241 eV Total energy + Delta-G solvation = -3629.512024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.54319 -38.92633 -37.17176 -36.77701 -34.74333 -33.33573 -32.13591 -30.68550 -29.82063 -28.68246 -25.94552 -24.71378 -24.31826 -22.95638 -22.40678 -22.17480 -20.74343 -19.88092 -18.67911 -17.48440 -16.60239 -16.05112 -15.74946 -15.45643 -15.38389 -14.81344 -14.72679 -14.38253 -14.35821 -13.87870 -13.72895 -13.30863 -13.09785 -13.00708 -12.63112 -12.33878 -12.24141 -11.90162 -11.72243 -11.60698 -11.51225 -11.18872 -11.06364 -10.98133 -10.90640 -10.57242 -10.48170 -10.41667 -10.32387 -10.18215 -9.28672 -9.13462 -8.98088 -8.67281 -8.57692 -7.66771 -7.44846 -6.54271 -4.26014 1.06349 1.69661 2.55076 3.16384 3.27356 3.32894 3.73212 4.09798 4.16550 4.32510 4.46563 4.48435 4.55222 4.80472 4.87075 4.93180 5.05915 5.19319 5.26929 5.36477 5.52142 5.55343 5.64015 5.65651 5.72889 5.79601 5.82449 5.87234 5.91994 5.97317 5.99577 6.03307 6.04841 6.19326 6.25311 6.35428 6.39489 6.60085 6.69341 6.70934 6.83632 7.16749 7.21958 7.34414 7.63967 7.68495 7.78670 8.40589 8.92693 9.27088 9.75186 10.53321 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.003767 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.289596 B = 7431.063693 C = 8228.741690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.050 3.950 4 C 0.112 3.888 5 N -0.459 5.459 6 C -0.345 4.345 7 H 0.100 0.900 8 C 0.076 3.924 9 N -0.859 5.859 10 Si 0.841 3.159 11 H -0.244 1.244 12 H -0.284 1.284 13 H -0.263 1.263 14 C 0.512 3.488 15 O -0.576 6.576 16 C -0.151 4.151 17 C -0.098 4.098 18 C -0.046 4.046 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.064 4.064 22 C -0.113 4.113 23 C -0.179 4.179 24 C -0.171 4.171 25 C -0.117 4.117 26 C -0.109 4.109 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.277 0.723 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 -8.131 -3.744 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C -0.027 4.027 4 C -0.012 4.012 5 N -0.180 5.180 6 C -0.472 4.472 7 H 0.117 0.883 8 C -0.131 4.131 9 N -0.494 5.494 10 Si 0.665 3.335 11 H -0.168 1.168 12 H -0.210 1.210 13 H -0.187 1.187 14 C 0.304 3.696 15 O -0.460 6.460 16 C -0.171 4.171 17 C -0.118 4.118 18 C -0.046 4.046 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.064 4.064 22 C -0.132 4.132 23 C -0.216 4.216 24 C -0.208 4.208 25 C -0.135 4.135 26 C -0.127 4.127 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.137 0.863 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.418 -8.549 -3.430 9.221 hybrid contribution 0.620 0.188 0.239 0.691 sum 1.039 -8.361 -3.191 9.010 Atomic orbital electron populations 1.22649 0.82965 1.01944 0.98936 1.88173 1.17787 1.27167 1.95072 1.22960 0.95472 0.85031 0.99274 1.21518 0.91591 0.98848 0.89236 1.43420 1.59891 1.04184 1.10457 1.18998 1.02809 1.20724 1.04718 0.88274 1.25669 0.97282 0.95006 0.95157 1.69710 1.26544 1.43433 1.09700 0.87424 0.82441 0.81721 0.81879 1.16807 1.21031 1.18747 1.18269 0.80795 0.82784 0.87741 1.90680 1.53290 1.62075 1.39936 1.23593 0.97952 0.95550 1.00045 1.22084 0.98431 0.95106 0.96200 1.19127 0.98215 0.93157 0.94101 1.21596 0.97139 1.00664 0.92711 1.20942 1.00091 0.94186 0.98417 1.19143 0.99556 0.93245 0.94435 1.21002 1.03462 1.00240 0.88450 1.23079 0.97063 0.98832 1.02641 1.23022 0.96886 1.03253 0.97646 1.20742 1.00124 0.99160 0.93501 1.21267 0.99392 0.93977 0.98029 0.95056 0.94738 0.90346 0.93913 0.93141 0.90891 0.89503 0.91275 0.83560 0.85556 0.84961 0.86010 0.87256 0.88146 0.88641 0.88705 0.88474 0.86322 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.46 9.36 -46.67 -0.44 -7.90 16 3 C 0.05 0.94 6.28 37.15 0.23 1.17 16 4 C 0.11 2.33 5.82 -4.04 -0.02 2.31 16 5 N -0.46 -11.23 1.96 -116.46 -0.23 -11.46 16 6 C -0.34 -8.87 9.30 -15.04 -0.14 -9.01 16 7 H 0.10 2.67 8.06 -52.48 -0.42 2.25 16 8 C 0.08 1.96 3.63 -17.44 -0.06 1.90 16 9 N -0.86 -22.55 13.95 55.51 0.77 -21.77 16 10 Si 0.84 20.14 24.67 -169.99 -4.19 15.95 16 11 H -0.24 -5.68 5.48 56.52 0.31 -5.37 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.51 12.98 5.88 -13.05 -0.08 12.91 16 15 O -0.58 -15.37 14.89 -6.30 -0.09 -15.47 16 16 C -0.15 -3.56 5.09 -37.53 -0.19 -3.75 16 17 C -0.10 -2.06 8.96 -37.13 -0.33 -2.39 16 18 C -0.05 -0.86 5.86 -105.06 -0.62 -1.47 16 19 C -0.10 -1.92 9.28 -39.10 -0.36 -2.28 16 20 C -0.12 -1.87 9.28 -39.65 -0.37 -2.24 16 21 C -0.06 -0.90 5.62 -104.49 -0.59 -1.49 16 22 C -0.11 -1.27 6.04 -91.77 -0.55 -1.83 16 23 C -0.18 -1.82 9.86 -26.73 -0.26 -2.08 16 24 C -0.17 -1.71 10.16 -26.73 -0.27 -1.98 16 25 C -0.12 -1.63 9.71 -39.65 -0.39 -2.02 16 26 C -0.11 -1.70 9.80 -39.10 -0.38 -2.08 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.56 7.47 -51.93 -0.39 1.18 16 33 H 0.09 1.62 8.04 -51.93 -0.42 1.21 16 34 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.15 3.56 3.15 -52.49 -0.17 3.40 16 36 H 0.13 2.59 7.53 -52.48 -0.40 2.20 16 37 H 0.13 2.68 6.21 -52.49 -0.33 2.36 16 38 H 0.12 1.72 6.00 -52.48 -0.31 1.40 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.10 1.07 6.16 -51.93 -0.32 0.75 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -30.33 366.39 -8.55 -38.88 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.63 Total: 8.97 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -3.27 Total: -12.73 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.55 Total: -33.23 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.53 Total: -23.37 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.19 Total: 15.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.33 -8.55 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493570206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.102 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds