Wall clock time and date at job start Tue Mar 31 2020 11:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00698 * 2 1 4 4 C 1.52991 * 109.47733 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46976 * 64.99758 * 4 3 2 6 6 C 1.36714 * 119.99680 * 90.00248 * 5 4 3 7 7 H 1.08004 * 120.00121 * 308.91310 * 6 5 4 8 8 C 1.39131 * 120.00161 * 128.91496 * 6 5 4 9 9 N 1.31321 * 120.00100 * 161.50939 * 8 6 5 10 10 Si 1.86801 * 119.99731 * 341.51434 * 8 6 5 11 11 H 1.48500 * 109.47494 * 95.25094 * 10 8 6 12 12 H 1.48497 * 109.46766 * 215.25299 * 10 8 6 13 13 H 1.48502 * 109.47200 * 335.25023 * 10 8 6 14 14 C 1.34769 * 120.00025 * 269.72573 * 5 4 3 15 15 O 1.21763 * 120.00146 * 3.88842 * 14 5 4 16 16 C 1.46232 * 119.99944 * 183.89170 * 14 5 4 17 17 C 1.34977 * 120.00094 * 174.27434 * 16 14 5 18 18 C 1.47148 * 120.00239 * 184.66141 * 17 16 14 19 19 C 1.39872 * 120.16832 * 2.78088 * 18 17 16 20 20 C 1.37884 * 119.81834 * 179.72321 * 19 18 17 21 21 C 1.38417 * 120.17449 * 0.54616 * 20 19 18 22 22 C 1.50700 * 119.82351 * 179.74430 * 21 20 19 23 23 C 1.53002 * 117.49911 * 8.60721 * 22 21 20 24 24 C 1.52999 * 117.49719 * 299.98267 * 22 21 20 25 25 C 1.38406 * 120.35005 * 359.72647 * 21 20 19 26 26 C 1.37878 * 120.17592 * 359.97438 * 25 21 20 27 27 H 1.09004 * 109.46856 * 300.00087 * 1 2 3 28 28 H 1.09002 * 109.47423 * 59.99913 * 1 2 3 29 29 H 1.09004 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46665 * 59.99597 * 3 2 1 31 31 H 1.09004 * 109.46619 * 300.00291 * 3 2 1 32 32 H 1.09003 * 109.47187 * 305.00161 * 4 3 2 33 33 H 1.09002 * 109.47645 * 184.99856 * 4 3 2 34 34 H 0.96996 * 119.99535 * 180.02562 * 9 8 6 35 35 H 1.08002 * 119.99847 * 354.26856 * 16 14 5 36 36 H 1.08007 * 119.99882 * 4.66099 * 17 16 14 37 37 H 1.08001 * 120.09208 * 359.97077 * 19 18 17 38 38 H 1.08004 * 119.91262 * 180.29610 * 20 19 18 39 39 H 1.08994 * 115.54592 * 154.30895 * 22 21 20 40 40 H 1.09000 * 117.49597 * 359.97438 * 23 22 21 41 41 H 1.08994 * 117.49948 * 145.01624 * 23 22 21 42 42 H 1.08999 * 117.49025 * 214.97567 * 24 22 21 43 43 H 1.08990 * 117.50029 * 359.97438 * 24 22 21 44 44 H 1.08003 * 119.91312 * 179.97438 * 25 21 20 45 45 H 1.08000 * 120.08822 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.2675 1.3438 -2.3354 7 1 3.5582 2.0848 -2.6734 8 6 5.4771 1.1830 -3.0036 9 7 5.6192 1.6449 -4.2247 10 14 6.8991 0.3098 -2.1640 11 1 6.9032 -1.1219 -2.5583 12 1 8.1792 0.9402 -2.5752 13 1 6.7453 0.4170 -0.6908 14 6 4.1011 -0.7758 -1.3314 15 8 3.7796 -1.4749 -0.3878 16 6 4.6224 -1.3896 -2.5520 17 6 4.8560 -2.7183 -2.5926 18 6 5.4760 -3.3204 -3.7836 19 6 5.8777 -2.5116 -4.8518 20 6 6.4632 -3.0828 -5.9618 21 6 6.6433 -4.4537 -6.0257 22 6 7.2788 -5.0701 -7.2452 23 6 7.8829 -4.1218 -8.2827 24 6 6.5784 -4.8602 -8.5891 25 6 6.2433 -5.2612 -4.9752 26 6 5.6620 -4.7048 -3.8556 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 6.4625 1.5324 -4.6906 35 1 4.8204 -0.7797 -3.4211 36 1 4.5879 -3.3397 -1.7509 37 1 5.7335 -1.4423 -4.8055 38 1 6.7783 -2.4592 -6.7854 39 1 7.7803 -6.0241 -7.0825 40 1 7.8204 -3.0520 -8.0834 41 1 8.7822 -4.4517 -8.8028 42 1 6.6195 -5.6761 -9.3108 43 1 5.6578 -4.2767 -8.5912 44 1 6.3868 -6.3301 -5.0327 45 1 5.3500 -5.3363 -3.0370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493570206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:30 Heat of formation + Delta-G solvation = -13.497993 kcal Electronic energy + Delta-G solvation = -26104.599799 eV Core-core repulsion = 22474.406241 eV Total energy + Delta-G solvation = -3630.193558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99283 -40.48970 -38.62492 -37.85215 -36.64937 -34.90426 -33.97769 -31.93792 -31.40323 -30.11757 -27.28092 -26.61403 -25.75555 -24.11188 -23.81026 -23.07873 -22.21619 -21.21289 -20.38249 -19.23466 -17.91806 -17.70094 -17.30692 -17.07509 -16.62578 -16.20431 -16.16363 -15.93220 -15.85505 -15.21968 -15.11976 -14.94045 -14.79913 -14.37858 -14.06941 -14.01218 -13.55428 -13.40605 -13.21294 -13.01290 -12.91704 -12.64717 -12.50819 -12.42966 -12.17295 -12.08694 -11.94745 -11.85992 -11.71021 -11.22668 -11.07533 -10.62585 -10.56188 -10.44194 -9.92357 -9.55192 -8.94473 -8.55434 -6.29336 -0.39587 0.44806 1.01584 1.24218 1.32194 1.36468 2.14129 2.39244 2.66436 2.75654 2.88484 3.06277 3.18599 3.60768 3.80757 3.84309 3.99268 4.03447 4.14261 4.21745 4.23748 4.29509 4.36853 4.41528 4.44790 4.52479 4.55125 4.55511 4.63413 4.70800 4.79967 4.81515 4.92493 4.98074 5.00200 5.08843 5.16231 5.25293 5.27325 5.35821 5.54065 5.63537 5.67605 5.76803 5.81313 6.01848 6.35987 6.41249 6.92778 7.33009 7.82799 8.54965 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.003767 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.289596 B = 7431.063693 C = 8228.741690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.056 3.944 4 C 0.102 3.898 5 N -0.467 5.467 6 C -0.349 4.349 7 H 0.080 0.920 8 C 0.061 3.939 9 N -0.884 5.884 10 Si 0.884 3.116 11 H -0.239 1.239 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.507 3.493 15 O -0.599 6.599 16 C -0.198 4.198 17 C -0.062 4.062 18 C -0.085 4.085 19 C -0.118 4.118 20 C -0.130 4.130 21 C -0.049 4.049 22 C -0.125 4.125 23 C -0.180 4.180 24 C -0.163 4.163 25 C -0.114 4.114 26 C -0.099 4.099 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.282 0.718 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.158 0.842 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -10.727 -4.685 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.021 4.021 4 C -0.020 4.020 5 N -0.187 5.187 6 C -0.477 4.477 7 H 0.098 0.902 8 C -0.145 4.145 9 N -0.519 5.519 10 Si 0.709 3.291 11 H -0.163 1.163 12 H -0.206 1.206 13 H -0.205 1.205 14 C 0.300 3.700 15 O -0.486 6.486 16 C -0.218 4.218 17 C -0.082 4.082 18 C -0.085 4.085 19 C -0.136 4.136 20 C -0.147 4.147 21 C -0.049 4.049 22 C -0.143 4.143 23 C -0.216 4.216 24 C -0.200 4.200 25 C -0.132 4.132 26 C -0.117 4.117 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.122 0.878 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.107 0.893 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.103 0.897 44 H 0.176 0.824 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.204 -11.125 -4.379 12.016 hybrid contribution 0.352 0.830 0.399 0.986 sum 1.556 -10.295 -3.980 11.147 Atomic orbital electron populations 1.22847 0.80563 1.03014 1.00467 1.88110 1.20583 1.28232 1.95400 1.22899 0.93614 0.84842 1.00736 1.21765 0.93707 0.99235 0.87339 1.43516 1.59933 1.04048 1.11201 1.18821 1.02623 1.20443 1.05776 0.90241 1.25898 0.98330 0.95144 0.95150 1.69740 1.27240 1.44625 1.10328 0.86799 0.80835 0.81603 0.79910 1.16258 1.20551 1.20547 1.18592 0.80388 0.83040 0.88012 1.90634 1.54660 1.62472 1.40819 1.23358 1.02521 0.96587 0.99374 1.22344 0.94938 0.94199 0.96764 1.19146 1.00911 0.94779 0.93709 1.21506 0.98444 0.99530 0.94096 1.21110 1.00180 0.95564 0.97896 1.19573 0.97379 0.92449 0.95547 1.21133 1.04337 1.01331 0.87479 1.23170 0.98127 0.98172 1.02156 1.23087 0.96277 1.03618 0.97009 1.21182 0.98578 1.01089 0.92310 1.21571 0.98155 0.92629 0.99318 0.92315 0.94283 0.89628 0.90013 0.93840 0.91739 0.87771 0.90765 0.84811 0.85244 0.87763 0.84963 0.84850 0.89265 0.86575 0.86331 0.89679 0.82428 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.63 9.36 -138.05 -1.29 -17.92 16 3 C 0.06 2.09 6.28 71.98 0.45 2.54 16 4 C 0.10 4.35 5.82 86.37 0.50 4.86 16 5 N -0.47 -23.64 1.96 -640.56 -1.26 -24.89 16 6 C -0.35 -18.68 9.30 84.15 0.78 -17.90 16 7 H 0.08 4.50 8.06 -2.91 -0.02 4.48 16 8 C 0.06 3.23 3.63 84.98 0.31 3.54 16 9 N -0.88 -47.91 13.95 21.69 0.30 -47.61 16 10 Si 0.88 43.01 24.67 68.60 1.69 44.70 16 11 H -0.24 -11.33 5.48 99.48 0.55 -10.78 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 14 C 0.51 26.58 5.88 86.32 0.51 27.09 16 15 O -0.60 -32.91 14.89 6.38 0.10 -32.81 16 16 C -0.20 -9.68 5.09 23.60 0.12 -9.56 16 17 C -0.06 -2.66 8.96 23.86 0.21 -2.44 16 18 C -0.09 -3.17 5.86 -20.15 -0.12 -3.29 16 19 C -0.12 -4.44 9.28 22.58 0.21 -4.23 16 20 C -0.13 -3.99 9.28 22.23 0.21 -3.78 16 21 C -0.05 -1.25 5.62 -19.78 -0.11 -1.36 16 22 C -0.12 -2.30 6.04 -11.54 -0.07 -2.37 16 23 C -0.18 -3.07 9.86 30.60 0.30 -2.76 16 24 C -0.16 -2.68 10.16 30.60 0.31 -2.37 16 25 C -0.11 -2.74 9.71 22.22 0.22 -2.52 16 26 C -0.10 -2.86 9.80 22.58 0.22 -2.63 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.06 2.83 7.47 -2.39 -0.02 2.81 16 33 H 0.10 3.94 8.04 -2.39 -0.02 3.92 16 34 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.13 6.88 3.15 -2.91 -0.01 6.87 16 36 H 0.13 5.34 7.53 -2.91 -0.02 5.32 16 37 H 0.10 4.49 6.21 -2.91 -0.02 4.47 16 38 H 0.13 3.67 6.00 -2.91 -0.02 3.66 16 39 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.09 1.73 6.16 -2.39 -0.01 1.72 16 41 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -68.15 366.39 5.67 -62.48 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.83 Total: 31.21 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 5.30 Total: -15.15 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -0.95 Total: -72.50 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -1.20 Total: -50.73 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.69 Total: 44.70 kcal Total: -68.15 5.67 -62.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493570206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.979 kcal (2) G-P(sol) polarization free energy of solvation -68.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds