Wall clock time and date at job start Tue Mar 31 2020 11:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00361 * 2 1 4 4 C 1.52998 * 109.47471 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46691 * 65.00118 * 4 3 2 6 6 C 1.36715 * 119.99845 * 269.99721 * 5 4 3 7 7 H 1.08002 * 119.99904 * 132.63528 * 6 5 4 8 8 C 1.39124 * 120.00166 * 312.63073 * 6 5 4 9 9 N 1.31317 * 119.99679 * 3.04851 * 8 6 5 10 10 Si 1.86799 * 120.00078 * 183.05343 * 8 6 5 11 11 H 1.48496 * 109.47157 * 59.99839 * 10 8 6 12 12 H 1.48491 * 109.47210 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46803 * 299.99890 * 10 8 6 14 14 C 1.34776 * 120.00278 * 90.00228 * 5 4 3 15 15 O 1.21763 * 119.99564 * 355.32373 * 14 5 4 16 16 C 1.46226 * 120.00377 * 175.32954 * 14 5 4 17 17 C 1.34980 * 120.00011 * 173.99055 * 16 14 5 18 18 C 1.47147 * 120.00042 * 346.83174 * 17 16 14 19 19 C 1.39870 * 120.17178 * 316.45709 * 18 17 16 20 20 C 1.37888 * 119.81960 * 179.74742 * 19 18 17 21 21 C 1.38411 * 120.17199 * 0.54884 * 20 19 18 22 22 C 1.50698 * 119.82366 * 179.72170 * 21 20 19 23 23 C 1.53004 * 117.49872 * 8.60331 * 22 21 20 24 24 C 1.52995 * 117.49785 * 299.98057 * 22 21 20 25 25 C 1.38413 * 120.35580 * 359.70101 * 21 20 19 26 26 C 1.37881 * 120.17220 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.46988 * 60.00126 * 1 2 3 28 28 H 1.09004 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47103 * 299.99818 * 1 2 3 30 30 H 1.08999 * 109.46707 * 59.99775 * 3 2 1 31 31 H 1.09004 * 109.46776 * 300.00102 * 3 2 1 32 32 H 1.08994 * 109.47443 * 305.00469 * 4 3 2 33 33 H 1.08994 * 109.47370 * 184.99645 * 4 3 2 34 34 H 0.97005 * 119.99743 * 185.00253 * 9 8 6 35 35 H 1.07994 * 119.99940 * 353.98750 * 16 14 5 36 36 H 1.08003 * 119.99863 * 166.83589 * 17 16 14 37 37 H 1.08001 * 120.09028 * 0.02562 * 19 18 17 38 38 H 1.07999 * 119.91336 * 180.27242 * 20 19 18 39 39 H 1.09004 * 115.55025 * 154.30770 * 22 21 20 40 40 H 1.09002 * 117.49801 * 359.97438 * 23 22 21 41 41 H 1.09004 * 117.49761 * 145.02160 * 23 22 21 42 42 H 1.09008 * 117.49770 * 214.97626 * 24 22 21 43 43 H 1.09000 * 117.50336 * 359.97438 * 24 22 21 44 44 H 1.07994 * 119.91674 * 180.02562 * 25 21 20 45 45 H 1.08005 * 120.09258 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0975 -0.7953 -1.3344 7 1 3.6789 -1.3239 -2.1780 8 6 4.7599 -1.4976 -0.3326 9 7 5.2166 -0.8626 0.7223 10 14 4.9998 -3.3435 -0.4881 11 1 5.7855 -3.6391 -1.7130 12 1 5.7287 -3.8500 0.7023 13 1 3.6753 -4.0090 -0.5770 14 6 4.2633 1.3328 -2.3201 15 8 4.0747 2.5349 -2.2735 16 6 4.8007 0.7236 -3.5359 17 6 4.9738 1.4717 -4.6460 18 6 4.3642 2.8080 -4.7351 19 6 3.0474 3.0098 -4.3089 20 6 2.4850 4.2661 -4.3908 21 6 3.2163 5.3235 -4.9037 22 6 2.5918 6.6919 -4.9955 23 6 1.2310 6.8938 -4.3259 24 6 1.3322 6.8376 -5.8515 25 6 4.5182 5.1308 -5.3324 26 6 5.0967 3.8818 -5.2518 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5684 0.8426 33 1 3.9785 2.1764 0.0901 34 1 5.7410 -1.3383 1.3853 35 1 5.0591 -0.3249 -3.5457 36 1 5.5598 1.0895 -5.4688 37 1 2.4741 2.1848 -3.9125 38 1 1.4699 4.4245 -4.0581 39 1 3.2897 7.5291 -4.9803 40 1 0.7872 6.0367 -3.8193 41 1 1.0334 7.8640 -3.8699 42 1 1.2010 7.7709 -6.3993 43 1 0.9553 5.9438 -6.3487 44 1 5.0824 5.9609 -5.7310 45 1 6.1125 3.7329 -5.5871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493570207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:35 Heat of formation + Delta-G solvation = 4.773778 kcal Electronic energy + Delta-G solvation = -26466.205008 eV Core-core repulsion = 22836.803773 eV Total energy + Delta-G solvation = -3629.401235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.43750 -38.53702 -37.07231 -36.44252 -34.69762 -32.78060 -31.56619 -30.38222 -29.68391 -28.48076 -25.82457 -24.80777 -23.95509 -22.79062 -22.32665 -21.87529 -20.47173 -19.75796 -18.72504 -17.10126 -16.35500 -16.11085 -15.43008 -15.35503 -15.11388 -14.65633 -14.53008 -14.34253 -14.02379 -13.93912 -13.42965 -13.21800 -13.02965 -12.70100 -12.39591 -12.24899 -11.88950 -11.70913 -11.52851 -11.41909 -11.21572 -11.01496 -10.91670 -10.79630 -10.71590 -10.53750 -10.48819 -10.35159 -10.19491 -10.03934 -9.10681 -8.95832 -8.92672 -8.54484 -8.21681 -7.35771 -7.27233 -6.29692 -4.11009 1.41013 2.05035 2.51433 3.18485 3.22765 3.24068 3.87909 4.10792 4.44595 4.49997 4.58858 4.69878 4.88693 4.93634 5.06081 5.08859 5.27893 5.41180 5.47771 5.52563 5.61141 5.69077 5.74573 5.82891 5.86834 5.90045 6.01181 6.06479 6.09970 6.10861 6.18082 6.28036 6.39172 6.41430 6.53019 6.61179 6.74699 6.84207 6.98946 7.09060 7.16314 7.31711 7.34323 7.56888 7.60295 7.89279 8.10153 8.42283 9.11566 9.54127 9.97688 10.68772 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003953 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.121464 B = 7081.515084 C = 8220.392963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.056 3.944 4 C 0.103 3.897 5 N -0.417 5.417 6 C -0.315 4.315 7 H 0.084 0.916 8 C 0.051 3.949 9 N -0.868 5.868 10 Si 0.918 3.082 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.484 3.516 15 O -0.593 6.593 16 C -0.141 4.141 17 C -0.103 4.103 18 C -0.035 4.035 19 C -0.028 4.028 20 C -0.132 4.132 21 C -0.060 4.060 22 C -0.109 4.109 23 C -0.179 4.179 24 C -0.174 4.174 25 C -0.130 4.130 26 C -0.111 4.111 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.271 0.729 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 7.294 -8.125 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C -0.021 4.021 4 C -0.020 4.020 5 N -0.133 5.133 6 C -0.444 4.444 7 H 0.101 0.899 8 C -0.154 4.154 9 N -0.505 5.505 10 Si 0.744 3.256 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.197 1.197 14 C 0.275 3.725 15 O -0.481 6.481 16 C -0.161 4.161 17 C -0.124 4.124 18 C -0.036 4.036 19 C -0.047 4.047 20 C -0.150 4.150 21 C -0.060 4.060 22 C -0.127 4.127 23 C -0.216 4.216 24 C -0.211 4.211 25 C -0.148 4.148 26 C -0.129 4.129 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.145 0.855 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.320 7.617 -7.792 12.125 hybrid contribution -0.016 -0.828 0.269 0.870 sum -5.335 6.789 -7.523 11.452 Atomic orbital electron populations 1.22633 0.83691 1.01628 0.98688 1.88162 1.17093 1.27745 1.94982 1.22991 0.96764 0.84157 0.98236 1.21761 0.89051 0.99144 0.92068 1.43252 1.54584 1.06101 1.09366 1.19243 1.35171 0.81278 1.08692 0.89864 1.25542 0.94897 1.00050 0.94928 1.69525 1.33592 1.37400 1.09968 0.86146 0.78689 0.82877 0.77845 1.19778 1.20944 1.19690 1.18559 0.81762 0.86336 0.85795 1.90731 1.58720 1.14590 1.84022 1.23311 1.00062 0.99885 0.92889 1.22104 0.99188 0.93236 0.97841 1.18841 0.93695 0.93275 0.97746 1.20994 0.94129 0.96548 0.92986 1.20693 0.99669 0.92753 1.01922 1.18981 0.94226 0.92729 1.00066 1.20994 0.90418 0.96099 1.05160 1.23045 1.00245 1.03130 0.95196 1.22996 1.01511 1.02972 0.93622 1.20563 0.94708 0.96834 1.02709 1.21078 0.98891 0.92515 1.00403 0.95165 0.90502 0.95268 0.94589 0.94508 0.85463 0.91536 0.91839 0.85034 0.86091 0.87155 0.87106 0.87511 0.88305 0.88832 0.88925 0.88728 0.87086 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.84 10.17 -35.23 -0.36 -8.20 16 3 C 0.06 1.19 6.28 37.16 0.23 1.42 16 4 C 0.10 2.49 5.39 -4.04 -0.02 2.46 16 5 N -0.42 -10.40 2.48 -116.47 -0.29 -10.69 16 6 C -0.32 -7.93 7.47 -15.05 -0.11 -8.04 16 7 H 0.08 2.04 7.47 -52.49 -0.39 1.64 16 8 C 0.05 1.29 5.38 -17.44 -0.09 1.19 16 9 N -0.87 -22.71 10.88 55.50 0.60 -22.11 16 10 Si 0.92 19.51 29.56 -169.99 -5.02 14.48 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 C 0.48 11.62 6.62 -13.05 -0.09 11.53 16 15 O -0.59 -14.88 11.96 5.13 0.06 -14.82 16 16 C -0.14 -2.91 9.13 -37.53 -0.34 -3.25 16 17 C -0.10 -1.85 9.81 -37.12 -0.36 -2.22 16 18 C -0.04 -0.66 4.49 -105.06 -0.47 -1.13 16 19 C -0.03 -0.54 6.69 -39.10 -0.26 -0.80 16 20 C -0.13 -2.27 9.28 -39.65 -0.37 -2.64 16 21 C -0.06 -0.94 5.62 -104.49 -0.59 -1.53 16 22 C -0.11 -1.38 6.04 -91.77 -0.55 -1.93 16 23 C -0.18 -2.05 9.86 -26.73 -0.26 -2.31 16 24 C -0.17 -1.87 10.16 -26.73 -0.27 -2.14 16 25 C -0.13 -2.03 9.71 -39.65 -0.39 -2.41 16 26 C -0.11 -1.85 9.80 -39.10 -0.38 -2.23 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.13 3.31 5.34 -51.93 -0.28 3.03 16 33 H 0.07 1.62 7.49 -51.93 -0.39 1.23 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.13 2.61 6.94 -52.49 -0.36 2.24 16 36 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.11 2.24 7.12 -52.49 -0.37 1.86 16 38 H 0.11 1.73 6.00 -52.49 -0.31 1.42 16 39 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.10 1.20 6.16 -51.93 -0.32 0.88 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -29.14 371.37 -9.27 -38.41 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.64 Total: 9.72 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -3.22 Total: -12.40 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.32 Total: -32.80 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.30 Total: -23.01 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.14 -9.27 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493570207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.186 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds