Wall clock time and date at job start Tue Mar 31 2020 11:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00361 * 2 1 4 4 C 1.52998 * 109.47471 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46691 * 65.00118 * 4 3 2 6 6 C 1.36715 * 119.99845 * 269.99721 * 5 4 3 7 7 H 1.08002 * 119.99904 * 132.63528 * 6 5 4 8 8 C 1.39124 * 120.00166 * 312.63073 * 6 5 4 9 9 N 1.31317 * 119.99679 * 3.04851 * 8 6 5 10 10 Si 1.86799 * 120.00078 * 183.05343 * 8 6 5 11 11 H 1.48496 * 109.47157 * 59.99839 * 10 8 6 12 12 H 1.48491 * 109.47210 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46803 * 299.99890 * 10 8 6 14 14 C 1.34776 * 120.00278 * 90.00228 * 5 4 3 15 15 O 1.21763 * 119.99564 * 355.32373 * 14 5 4 16 16 C 1.46226 * 120.00377 * 175.32954 * 14 5 4 17 17 C 1.34980 * 120.00011 * 173.99055 * 16 14 5 18 18 C 1.47147 * 120.00042 * 346.83174 * 17 16 14 19 19 C 1.39870 * 120.17178 * 316.45709 * 18 17 16 20 20 C 1.37888 * 119.81960 * 179.74742 * 19 18 17 21 21 C 1.38411 * 120.17199 * 0.54884 * 20 19 18 22 22 C 1.50698 * 119.82366 * 179.72170 * 21 20 19 23 23 C 1.53004 * 117.49872 * 8.60331 * 22 21 20 24 24 C 1.52995 * 117.49785 * 299.98057 * 22 21 20 25 25 C 1.38413 * 120.35580 * 359.70101 * 21 20 19 26 26 C 1.37881 * 120.17220 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.46988 * 60.00126 * 1 2 3 28 28 H 1.09004 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47103 * 299.99818 * 1 2 3 30 30 H 1.08999 * 109.46707 * 59.99775 * 3 2 1 31 31 H 1.09004 * 109.46776 * 300.00102 * 3 2 1 32 32 H 1.08994 * 109.47443 * 305.00469 * 4 3 2 33 33 H 1.08994 * 109.47370 * 184.99645 * 4 3 2 34 34 H 0.97005 * 119.99743 * 185.00253 * 9 8 6 35 35 H 1.07994 * 119.99940 * 353.98750 * 16 14 5 36 36 H 1.08003 * 119.99863 * 166.83589 * 17 16 14 37 37 H 1.08001 * 120.09028 * 0.02562 * 19 18 17 38 38 H 1.07999 * 119.91336 * 180.27242 * 20 19 18 39 39 H 1.09004 * 115.55025 * 154.30770 * 22 21 20 40 40 H 1.09002 * 117.49801 * 359.97438 * 23 22 21 41 41 H 1.09004 * 117.49761 * 145.02160 * 23 22 21 42 42 H 1.09008 * 117.49770 * 214.97626 * 24 22 21 43 43 H 1.09000 * 117.50336 * 359.97438 * 24 22 21 44 44 H 1.07994 * 119.91674 * 180.02562 * 25 21 20 45 45 H 1.08005 * 120.09258 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0975 -0.7953 -1.3344 7 1 3.6789 -1.3239 -2.1780 8 6 4.7599 -1.4976 -0.3326 9 7 5.2166 -0.8626 0.7223 10 14 4.9998 -3.3435 -0.4881 11 1 5.7855 -3.6391 -1.7130 12 1 5.7287 -3.8500 0.7023 13 1 3.6753 -4.0090 -0.5770 14 6 4.2633 1.3328 -2.3201 15 8 4.0747 2.5349 -2.2735 16 6 4.8007 0.7236 -3.5359 17 6 4.9738 1.4717 -4.6460 18 6 4.3642 2.8080 -4.7351 19 6 3.0474 3.0098 -4.3089 20 6 2.4850 4.2661 -4.3908 21 6 3.2163 5.3235 -4.9037 22 6 2.5918 6.6919 -4.9955 23 6 1.2310 6.8938 -4.3259 24 6 1.3322 6.8376 -5.8515 25 6 4.5182 5.1308 -5.3324 26 6 5.0967 3.8818 -5.2518 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5684 0.8426 33 1 3.9785 2.1764 0.0901 34 1 5.7410 -1.3383 1.3853 35 1 5.0591 -0.3249 -3.5457 36 1 5.5598 1.0895 -5.4688 37 1 2.4741 2.1848 -3.9125 38 1 1.4699 4.4245 -4.0581 39 1 3.2897 7.5291 -4.9803 40 1 0.7872 6.0367 -3.8193 41 1 1.0334 7.8640 -3.8699 42 1 1.2010 7.7709 -6.3993 43 1 0.9553 5.9438 -6.3487 44 1 5.0824 5.9609 -5.7310 45 1 6.1125 3.7329 -5.5871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493570207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:34 Heat of formation + Delta-G solvation = -9.225941 kcal Electronic energy + Delta-G solvation = -26466.812082 eV Core-core repulsion = 22836.803773 eV Total energy + Delta-G solvation = -3630.008308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.91442 -40.06429 -38.61962 -37.67327 -36.47391 -34.26572 -33.45517 -31.70609 -31.29853 -29.94650 -27.31389 -26.61760 -25.39085 -24.07880 -23.64253 -23.00458 -21.99152 -21.10993 -20.44249 -18.62758 -18.11211 -17.41675 -17.13854 -16.95813 -16.34749 -16.24817 -16.00626 -15.92796 -15.42671 -15.39732 -14.88121 -14.72386 -14.45006 -14.09387 -13.93290 -13.56236 -13.49999 -13.29583 -13.00821 -12.80847 -12.70323 -12.51063 -12.46013 -12.42208 -12.08774 -11.94362 -11.80502 -11.77234 -11.64303 -11.19059 -10.88081 -10.55093 -10.39728 -10.27767 -9.63099 -9.22399 -8.70594 -8.17372 -6.05724 -0.01933 0.71063 1.09039 1.48760 1.51928 1.57802 2.34464 2.69296 2.84554 2.98043 3.15039 3.23654 3.27253 3.70618 3.96384 4.05195 4.06783 4.15671 4.24234 4.25452 4.28437 4.39979 4.48784 4.51710 4.59034 4.60879 4.63578 4.73791 4.78083 4.79987 4.87043 4.92850 4.97742 5.16826 5.20169 5.25384 5.28714 5.38594 5.40487 5.52459 5.65474 5.72793 5.81183 5.94487 6.14704 6.26103 6.42900 6.51315 7.21183 7.69103 8.11966 8.81184 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003953 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.121464 B = 7081.515084 C = 8220.392963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.070 3.930 4 C 0.104 3.896 5 N -0.434 5.434 6 C -0.324 4.324 7 H 0.083 0.917 8 C 0.009 3.991 9 N -0.900 5.900 10 Si 0.982 3.018 11 H -0.261 1.261 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.479 3.521 15 O -0.612 6.612 16 C -0.182 4.182 17 C -0.062 4.062 18 C -0.071 4.071 19 C -0.046 4.046 20 C -0.147 4.147 21 C -0.057 4.057 22 C -0.126 4.126 23 C -0.183 4.183 24 C -0.156 4.156 25 C -0.134 4.134 26 C -0.110 4.110 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.270 0.730 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.143 0.857 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 8.372 -10.029 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.008 4.008 4 C -0.020 4.020 5 N -0.151 5.151 6 C -0.452 4.452 7 H 0.101 0.899 8 C -0.193 4.193 9 N -0.538 5.538 10 Si 0.805 3.195 11 H -0.185 1.185 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.272 3.728 15 O -0.501 6.501 16 C -0.202 4.202 17 C -0.083 4.083 18 C -0.071 4.071 19 C -0.064 4.064 20 C -0.165 4.165 21 C -0.057 4.057 22 C -0.144 4.144 23 C -0.219 4.219 24 C -0.193 4.193 25 C -0.152 4.152 26 C -0.128 4.128 27 H 0.055 0.945 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.180 0.820 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.161 0.839 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.438 8.697 -9.716 14.128 hybrid contribution -0.073 -0.959 0.746 1.217 sum -5.512 7.738 -8.970 13.066 Atomic orbital electron populations 1.22872 0.80900 1.03259 1.00061 1.88091 1.20211 1.27783 1.95234 1.22750 0.94926 0.84401 0.98729 1.21619 0.91102 0.97639 0.91639 1.43402 1.55646 1.06313 1.09692 1.19387 1.35411 0.81568 1.08880 0.89915 1.26302 0.94518 1.04048 0.94437 1.69663 1.34552 1.38899 1.10686 0.85176 0.78534 0.77750 0.78018 1.18513 1.21014 1.19592 1.19091 0.80960 0.86266 0.86521 1.90698 1.59446 1.15380 1.84602 1.23163 1.03539 1.00640 0.92895 1.22580 0.96010 0.92281 0.97391 1.19069 0.93979 0.94373 0.99671 1.20917 0.94820 0.96668 0.94032 1.20864 1.00382 0.92708 1.02499 1.19379 0.94386 0.93773 0.98197 1.21095 0.91371 0.94733 1.07222 1.23117 0.99164 1.03595 0.96046 1.23063 0.99089 1.03932 0.93221 1.20989 0.94822 0.97429 1.01989 1.21417 0.99837 0.92308 0.99237 0.94452 0.88812 0.93115 0.92245 0.95577 0.87417 0.93135 0.91988 0.84682 0.82036 0.89775 0.86541 0.85778 0.89673 0.86934 0.86338 0.89347 0.83927 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.39 -17.37 10.17 -148.98 -1.52 -18.89 16 3 C 0.07 3.04 6.28 71.98 0.45 3.49 16 4 C 0.10 5.25 5.39 86.38 0.47 5.72 16 5 N -0.43 -22.60 2.48 -640.58 -1.59 -24.19 16 6 C -0.32 -16.81 7.47 84.14 0.63 -16.18 16 7 H 0.08 4.17 7.47 -2.91 -0.02 4.15 16 8 C 0.01 0.46 5.38 84.98 0.46 0.91 16 9 N -0.90 -48.65 10.88 21.69 0.24 -48.42 16 10 Si 0.98 40.44 29.56 68.60 2.03 42.47 16 11 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 13 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 14 C 0.48 23.94 6.62 86.32 0.57 24.51 16 15 O -0.61 -31.99 11.96 -4.55 -0.05 -32.04 16 16 C -0.18 -7.66 9.13 23.60 0.22 -7.44 16 17 C -0.06 -2.19 9.81 23.86 0.23 -1.96 16 18 C -0.07 -2.60 4.49 -20.15 -0.09 -2.69 16 19 C -0.05 -1.80 6.69 22.58 0.15 -1.65 16 20 C -0.15 -5.07 9.28 22.23 0.21 -4.86 16 21 C -0.06 -1.72 5.62 -19.78 -0.11 -1.83 16 22 C -0.13 -2.89 6.04 -11.54 -0.07 -2.95 16 23 C -0.18 -3.80 9.86 30.60 0.30 -3.50 16 24 C -0.16 -2.91 10.16 30.59 0.31 -2.60 16 25 C -0.13 -3.86 9.71 22.23 0.22 -3.64 16 26 C -0.11 -3.44 9.80 22.58 0.22 -3.22 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 32 H 0.11 5.90 5.34 -2.39 -0.01 5.89 16 33 H 0.05 2.62 7.49 -2.39 -0.02 2.60 16 34 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 35 H 0.14 5.47 6.94 -2.91 -0.02 5.45 16 36 H 0.16 4.24 8.06 -2.91 -0.02 4.21 16 37 H 0.08 3.64 7.12 -2.91 -0.02 3.62 16 38 H 0.12 3.74 6.00 -2.91 -0.02 3.73 16 39 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.08 2.00 6.16 -2.39 -0.01 1.99 16 41 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 45 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -65.54 371.37 5.49 -60.05 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.98 Total: 36.85 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 5.41 Total: -15.82 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.35 Total: -72.61 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -1.57 Total: -50.93 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -65.54 5.49 -60.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493570207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.820 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds