Wall clock time and date at job start Tue Mar 31 2020 11:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35685 * 117.00223 * 2 1 4 4 C 1.38609 * 120.15796 * 359.95082 * 3 2 1 5 5 C 1.38126 * 120.11118 * 180.02562 * 4 3 2 6 6 C 1.38575 * 120.43317 * 0.02562 * 5 4 3 7 7 C 1.37752 * 120.31784 * 0.02562 * 6 5 4 8 8 C 1.39921 * 119.88358 * 359.97438 * 7 6 5 9 9 C 1.46945 * 120.21118 * 180.02562 * 8 7 6 10 10 C 1.34995 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.46242 * 119.99936 * 180.02562 * 10 9 8 12 12 O 1.21720 * 120.00135 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99636 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99684 * 179.97438 * 13 11 10 15 15 H 1.08996 * 110.01782 * 326.38667 * 14 13 11 16 16 C 1.54265 * 110.03082 * 87.83453 * 14 13 11 17 17 C 1.54895 * 104.19356 * 95.67798 * 16 14 13 18 18 C 1.54883 * 102.75425 * 37.93783 * 17 16 14 19 19 H 1.09005 * 110.48481 * 80.73559 * 18 17 16 20 20 C 1.50698 * 110.60097 * 203.32669 * 18 17 16 21 21 H 1.08001 * 119.99979 * 114.83966 * 20 18 17 22 22 C 1.37875 * 119.99898 * 294.84046 * 20 18 17 23 23 N 1.31519 * 120.00047 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 120.00138 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47325 * 90.00022 * 24 22 20 26 26 H 1.48499 * 109.47410 * 210.00199 * 24 22 20 27 27 H 1.48503 * 109.47277 * 330.00049 * 24 22 20 28 28 C 1.53884 * 110.03179 * 205.00226 * 14 13 11 29 29 H 1.09007 * 109.47095 * 60.00377 * 1 2 3 30 30 H 1.08996 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47554 * 300.00052 * 1 2 3 32 32 H 1.07998 * 119.94644 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.78517 * 180.27643 * 5 4 3 34 34 H 1.07996 * 119.83582 * 179.97438 * 6 5 4 35 35 H 1.08006 * 120.05509 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.99832 * 179.97438 * 9 8 7 37 37 H 1.07998 * 120.00198 * 359.97438 * 10 9 8 38 38 H 0.96998 * 120.00610 * 359.97438 * 13 11 10 39 39 H 1.09000 * 110.48168 * 214.34763 * 16 14 13 40 40 H 1.08996 * 110.48811 * 336.99567 * 16 14 13 41 41 H 1.09008 * 110.74865 * 279.62191 * 17 16 14 42 42 H 1.09000 * 110.91473 * 156.33230 * 17 16 14 43 43 H 0.96997 * 119.99898 * 179.97438 * 23 22 20 44 44 H 1.09007 * 110.02928 * 359.97438 * 28 14 13 45 45 H 1.08996 * 110.03041 * 121.43039 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2934 2.3735 -0.0010 5 6 1.9215 3.6037 -0.0016 6 6 3.3048 3.6855 -0.0016 7 6 4.0692 2.5395 -0.0017 8 6 3.4467 1.2864 -0.0011 9 6 4.2551 0.0592 -0.0006 10 6 5.6027 0.1386 -0.0001 11 6 6.4071 -1.0827 -0.0002 12 8 5.8616 -2.1708 -0.0002 13 7 7.7525 -1.0033 -0.0002 14 6 8.5584 -2.2268 0.0003 15 1 8.0514 -3.0073 0.5676 16 6 8.8033 -2.6988 -1.4478 17 6 10.1890 -2.1092 -1.8102 18 6 10.9803 -2.2572 -0.4870 19 1 11.3564 -3.2746 -0.3792 20 6 12.1161 -1.2681 -0.4349 21 1 12.1148 -0.4829 0.3066 22 6 13.1569 -1.3656 -1.3339 23 7 13.1582 -2.3215 -2.2373 24 14 14.5651 -0.1401 -1.2690 25 1 15.6260 -0.6524 -0.3649 26 1 15.1236 0.0450 -2.6324 27 1 14.0654 1.1616 -0.7579 28 6 9.9426 -1.9460 0.6112 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2148 2.3190 -0.0014 33 1 1.3307 4.5077 0.0022 34 1 3.7859 4.6524 -0.0024 35 1 5.1471 2.6082 -0.0013 36 1 3.7710 -0.9063 0.0002 37 1 6.0868 1.1041 -0.0005 38 1 8.1873 -0.1362 -0.0006 39 1 8.8279 -3.7875 -1.4951 40 1 8.0351 -2.3043 -2.1127 41 1 10.1005 -1.0599 -2.0921 42 1 10.6597 -2.6836 -2.6081 43 1 13.8903 -2.3898 -2.8699 44 1 10.0148 -0.8993 0.9069 45 1 10.1075 -2.5909 1.4743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493657602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:40 Heat of formation + Delta-G solvation = -46.332719 kcal Electronic energy + Delta-G solvation = -24904.927865 eV Core-core repulsion = 21273.310486 eV Total energy + Delta-G solvation = -3631.617379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54065 -39.47145 -37.81851 -37.03040 -34.18773 -33.47364 -31.90731 -30.53771 -30.00260 -28.13365 -27.65034 -27.06112 -24.54025 -23.64669 -22.47649 -21.50449 -19.69691 -19.30709 -18.82665 -18.51094 -17.23381 -16.56901 -16.20761 -16.12049 -15.93787 -15.30326 -14.84788 -14.73959 -14.43531 -14.12341 -13.94718 -13.77549 -13.43119 -13.19445 -12.74295 -12.48283 -12.41495 -12.30498 -11.67759 -11.52436 -11.43744 -11.26820 -10.99796 -10.97153 -10.83290 -10.55548 -10.47862 -10.38142 -9.91146 -9.56436 -9.50465 -9.18786 -8.98588 -8.79566 -8.53609 -8.34300 -8.12123 -5.99963 -4.03021 0.38694 1.07302 1.90775 2.87277 3.30359 3.37542 3.38846 3.39487 3.62250 3.73309 4.37812 4.41235 4.44252 4.65655 4.70195 4.76173 4.93837 4.97204 5.11273 5.12678 5.18511 5.31794 5.36062 5.61979 5.68497 5.71682 5.74272 5.88361 5.93023 6.14072 6.27574 6.36873 6.38280 6.39931 6.49344 6.66855 6.68979 6.80372 6.97769 6.99067 7.00718 7.29926 7.38672 7.72212 7.88085 7.96604 8.04583 8.44760 8.61499 8.99708 9.60891 11.09525 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002327 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.513444 B =12027.421691 C =12993.235110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.148 3.852 4 C -0.213 4.213 5 C -0.072 4.072 6 C -0.159 4.159 7 C -0.065 4.065 8 C -0.101 4.101 9 C -0.020 4.020 10 C -0.209 4.209 11 C 0.541 3.459 12 O -0.554 6.554 13 N -0.708 5.708 14 C 0.139 3.861 15 H 0.076 0.924 16 C -0.136 4.136 17 C -0.100 4.100 18 C 0.048 3.952 19 H 0.032 0.968 20 C -0.514 4.514 21 H 0.055 0.945 22 C 0.062 3.938 23 N -0.888 5.888 24 Si 0.889 3.111 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 C -0.123 4.123 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.400 0.600 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.259 0.741 44 H 0.061 0.939 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.635 10.924 4.232 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.102 3.898 4 C -0.232 4.232 5 C -0.090 4.090 6 C -0.177 4.177 7 C -0.083 4.083 8 C -0.101 4.101 9 C -0.039 4.039 10 C -0.229 4.229 11 C 0.330 3.670 12 O -0.435 6.435 13 N -0.358 5.358 14 C 0.035 3.965 15 H 0.094 0.906 16 C -0.174 4.174 17 C -0.138 4.138 18 C 0.029 3.971 19 H 0.051 0.949 20 C -0.552 4.552 21 H 0.073 0.927 22 C -0.140 4.140 23 N -0.527 5.527 24 Si 0.717 3.283 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.161 4.161 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.235 0.765 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.798 9.858 4.089 26.997 hybrid contribution 0.776 1.331 -0.099 1.544 sum -24.022 11.189 3.989 26.799 Atomic orbital electron populations 1.23119 0.78071 1.04349 1.01352 1.86075 1.21556 1.26597 1.87854 1.19195 0.91473 0.84464 0.94659 1.21187 1.00126 0.92220 1.09669 1.21069 0.94770 0.96959 0.96245 1.21026 0.93799 0.98620 1.04235 1.21355 1.00438 0.90712 0.95782 1.18415 0.89723 0.93953 1.08036 1.22126 0.93172 0.97086 0.91562 1.22982 0.94682 0.98114 1.07154 1.18248 0.82671 0.89277 0.76842 1.90786 1.72160 1.29545 1.50989 1.46193 1.05576 1.10438 1.73571 1.21775 0.91613 0.85669 0.97408 0.90583 1.22837 0.99455 1.00084 0.95056 1.22453 0.91573 0.98956 1.00787 1.19465 0.91398 0.97225 0.89001 0.94936 1.21167 1.04974 1.13301 1.15729 0.92722 1.24989 0.97982 0.95510 0.95502 1.69962 1.32144 1.32041 1.18528 0.86653 0.82733 0.81734 0.77188 1.20768 1.21331 1.19995 1.22617 0.93028 1.00860 0.99589 0.92498 0.87907 0.92521 0.85207 0.85635 0.85443 0.84545 0.84378 0.85566 0.76543 0.92071 0.93139 0.93520 0.91504 0.93082 0.92016 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.19 9.68 -18.76 -0.18 -3.38 16 3 C 0.15 1.54 6.70 -38.64 -0.26 1.29 16 4 C -0.21 -1.73 9.03 -39.49 -0.36 -2.09 16 5 C -0.07 -0.53 10.03 -39.50 -0.40 -0.93 16 6 C -0.16 -1.25 10.02 -39.63 -0.40 -1.65 16 7 C -0.06 -0.61 9.41 -39.13 -0.37 -0.97 16 8 C -0.10 -1.13 5.88 -104.93 -0.62 -1.75 16 9 C -0.02 -0.26 9.21 -37.21 -0.34 -0.60 16 10 C -0.21 -2.72 9.41 -37.52 -0.35 -3.07 16 11 C 0.54 9.05 7.73 -13.05 -0.10 8.94 16 12 O -0.55 -11.23 15.89 5.17 0.08 -11.15 16 13 N -0.71 -11.60 5.03 -54.16 -0.27 -11.87 16 14 C 0.14 2.61 3.25 -66.80 -0.22 2.40 16 15 H 0.08 1.47 7.56 -51.93 -0.39 1.08 16 16 C -0.14 -2.72 6.54 -25.07 -0.16 -2.88 16 17 C -0.10 -2.30 5.75 -24.74 -0.14 -2.44 16 18 C 0.05 1.16 2.71 -90.12 -0.24 0.91 16 19 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 20 C -0.51 -13.71 8.47 -34.44 -0.29 -14.00 16 21 H 0.05 1.43 7.54 -52.49 -0.40 1.03 16 22 C 0.06 1.69 5.35 -17.82 -0.10 1.60 16 23 N -0.89 -25.36 12.29 55.43 0.68 -24.68 16 24 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 C -0.12 -2.46 6.13 -25.61 -0.16 -2.62 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 1.06 6.17 -52.48 -0.32 0.74 16 36 H 0.14 2.00 7.10 -52.48 -0.37 1.63 16 37 H 0.13 1.27 6.07 -52.49 -0.32 0.95 16 38 H 0.40 5.72 8.30 -40.82 -0.34 5.38 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 41 H 0.05 1.09 8.06 -51.92 -0.42 0.67 16 42 H 0.07 1.69 7.55 -51.93 -0.39 1.30 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.19 7.13 -51.93 -0.37 0.82 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -32.21 371.31 -9.17 -41.38 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.54 Total: 4.84 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.51 Total: -16.71 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.41 Total: -36.55 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.10 Total: -14.53 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.21 -9.17 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493657602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.957 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds