Wall clock time and date at job start Tue Mar 31 2020 11:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35685 * 117.00223 * 2 1 4 4 C 1.38609 * 120.15796 * 359.95082 * 3 2 1 5 5 C 1.38126 * 120.11118 * 180.02562 * 4 3 2 6 6 C 1.38575 * 120.43317 * 0.02562 * 5 4 3 7 7 C 1.37752 * 120.31784 * 0.02562 * 6 5 4 8 8 C 1.39921 * 119.88358 * 359.97438 * 7 6 5 9 9 C 1.46945 * 120.21118 * 180.02562 * 8 7 6 10 10 C 1.34995 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.46242 * 119.99936 * 180.02562 * 10 9 8 12 12 O 1.21720 * 120.00135 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99636 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99684 * 179.97438 * 13 11 10 15 15 H 1.08996 * 110.01782 * 326.38667 * 14 13 11 16 16 C 1.54265 * 110.03082 * 87.83453 * 14 13 11 17 17 C 1.54895 * 104.19356 * 95.67798 * 16 14 13 18 18 C 1.54883 * 102.75425 * 37.93783 * 17 16 14 19 19 H 1.09005 * 110.48481 * 80.73559 * 18 17 16 20 20 C 1.50698 * 110.60097 * 203.32669 * 18 17 16 21 21 H 1.08001 * 119.99979 * 114.83966 * 20 18 17 22 22 C 1.37875 * 119.99898 * 294.84046 * 20 18 17 23 23 N 1.31519 * 120.00047 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 120.00138 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47325 * 90.00022 * 24 22 20 26 26 H 1.48499 * 109.47410 * 210.00199 * 24 22 20 27 27 H 1.48503 * 109.47277 * 330.00049 * 24 22 20 28 28 C 1.53884 * 110.03179 * 205.00226 * 14 13 11 29 29 H 1.09007 * 109.47095 * 60.00377 * 1 2 3 30 30 H 1.08996 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47554 * 300.00052 * 1 2 3 32 32 H 1.07998 * 119.94644 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.78517 * 180.27643 * 5 4 3 34 34 H 1.07996 * 119.83582 * 179.97438 * 6 5 4 35 35 H 1.08006 * 120.05509 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.99832 * 179.97438 * 9 8 7 37 37 H 1.07998 * 120.00198 * 359.97438 * 10 9 8 38 38 H 0.96998 * 120.00610 * 359.97438 * 13 11 10 39 39 H 1.09000 * 110.48168 * 214.34763 * 16 14 13 40 40 H 1.08996 * 110.48811 * 336.99567 * 16 14 13 41 41 H 1.09008 * 110.74865 * 279.62191 * 17 16 14 42 42 H 1.09000 * 110.91473 * 156.33230 * 17 16 14 43 43 H 0.96997 * 119.99898 * 179.97438 * 23 22 20 44 44 H 1.09007 * 110.02928 * 359.97438 * 28 14 13 45 45 H 1.08996 * 110.03041 * 121.43039 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2934 2.3735 -0.0010 5 6 1.9215 3.6037 -0.0016 6 6 3.3048 3.6855 -0.0016 7 6 4.0692 2.5395 -0.0017 8 6 3.4467 1.2864 -0.0011 9 6 4.2551 0.0592 -0.0006 10 6 5.6027 0.1386 -0.0001 11 6 6.4071 -1.0827 -0.0002 12 8 5.8616 -2.1708 -0.0002 13 7 7.7525 -1.0033 -0.0002 14 6 8.5584 -2.2268 0.0003 15 1 8.0514 -3.0073 0.5676 16 6 8.8033 -2.6988 -1.4478 17 6 10.1890 -2.1092 -1.8102 18 6 10.9803 -2.2572 -0.4870 19 1 11.3564 -3.2746 -0.3792 20 6 12.1161 -1.2681 -0.4349 21 1 12.1148 -0.4829 0.3066 22 6 13.1569 -1.3656 -1.3339 23 7 13.1582 -2.3215 -2.2373 24 14 14.5651 -0.1401 -1.2690 25 1 15.6260 -0.6524 -0.3649 26 1 15.1236 0.0450 -2.6324 27 1 14.0654 1.1616 -0.7579 28 6 9.9426 -1.9460 0.6112 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2148 2.3190 -0.0014 33 1 1.3307 4.5077 0.0022 34 1 3.7859 4.6524 -0.0024 35 1 5.1471 2.6082 -0.0013 36 1 3.7710 -0.9063 0.0002 37 1 6.0868 1.1041 -0.0005 38 1 8.1873 -0.1362 -0.0006 39 1 8.8279 -3.7875 -1.4951 40 1 8.0351 -2.3043 -2.1127 41 1 10.1005 -1.0599 -2.0921 42 1 10.6597 -2.6836 -2.6081 43 1 13.8903 -2.3898 -2.8699 44 1 10.0148 -0.8993 0.9069 45 1 10.1075 -2.5909 1.4743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493657602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:39 Heat of formation + Delta-G solvation = -64.946882 kcal Electronic energy + Delta-G solvation = -24905.735035 eV Core-core repulsion = 21273.310486 eV Total energy + Delta-G solvation = -3632.424550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24526 -40.82163 -38.77236 -38.37417 -35.23464 -35.04942 -33.71378 -31.14873 -30.89089 -29.94194 -28.81210 -28.06659 -26.01735 -25.04519 -23.17029 -22.52396 -21.25700 -20.90252 -20.17131 -19.21319 -18.50412 -18.23625 -17.20548 -16.80888 -16.71752 -16.65980 -16.47441 -16.01169 -15.47127 -15.41644 -15.26578 -14.66436 -14.54667 -14.28359 -14.03193 -13.80230 -13.55323 -13.28506 -12.93794 -12.91457 -12.75993 -12.52483 -12.36334 -12.22767 -12.14154 -12.06326 -11.85404 -11.65931 -11.44164 -11.35807 -11.07193 -10.91635 -10.79402 -10.43616 -9.99102 -9.62397 -8.91465 -8.08288 -6.17986 -0.43712 0.44781 1.01077 1.44356 1.45309 1.54915 2.30648 2.31684 2.35911 2.47163 2.89346 3.22884 3.62204 3.79508 3.92064 4.00692 4.03342 4.14056 4.22493 4.23041 4.33684 4.37792 4.41476 4.47231 4.64408 4.70771 4.72811 4.77048 4.93679 4.96983 5.00518 5.02390 5.10698 5.19605 5.25917 5.26601 5.42266 5.44821 5.52965 5.60003 5.67947 5.72638 5.81055 5.91969 6.01082 6.39489 6.39941 6.68339 6.93372 7.31934 7.49591 9.00772 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002327 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.513444 B =12027.421691 C =12993.235110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.134 3.866 4 C -0.217 4.217 5 C -0.065 4.065 6 C -0.163 4.163 7 C -0.068 4.068 8 C -0.134 4.134 9 C -0.006 4.006 10 C -0.220 4.220 11 C 0.540 3.460 12 O -0.597 6.597 13 N -0.702 5.702 14 C 0.150 3.850 15 H 0.073 0.927 16 C -0.126 4.126 17 C -0.088 4.088 18 C 0.039 3.961 19 H -0.001 1.001 20 C -0.525 4.525 21 H 0.060 0.940 22 C 0.009 3.991 23 N -0.922 5.922 24 Si 0.954 3.046 25 H -0.279 1.279 26 H -0.288 1.288 27 H -0.263 1.263 28 C -0.110 4.110 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.113 0.887 37 H 0.160 0.840 38 H 0.412 0.588 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.259 0.741 44 H 0.073 0.927 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.088 14.170 4.999 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.088 3.912 4 C -0.236 4.236 5 C -0.083 4.083 6 C -0.181 4.181 7 C -0.085 4.085 8 C -0.135 4.135 9 C -0.026 4.026 10 C -0.241 4.241 11 C 0.331 3.669 12 O -0.481 6.481 13 N -0.352 5.352 14 C 0.045 3.955 15 H 0.091 0.909 16 C -0.165 4.165 17 C -0.126 4.126 18 C 0.021 3.979 19 H 0.017 0.983 20 C -0.564 4.564 21 H 0.079 0.921 22 C -0.190 4.190 23 N -0.562 5.562 24 Si 0.780 3.220 25 H -0.205 1.205 26 H -0.214 1.214 27 H -0.187 1.187 28 C -0.148 4.148 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.131 0.869 37 H 0.177 0.823 38 H 0.249 0.751 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.258 13.137 4.870 29.762 hybrid contribution 1.075 0.336 -0.339 1.177 sum -25.182 13.473 4.531 28.917 Atomic orbital electron populations 1.23390 0.76065 1.05572 1.02660 1.86039 1.23821 1.27249 1.87931 1.19470 0.91588 0.85281 0.94883 1.21499 1.01320 0.91702 1.09032 1.21525 0.95004 0.97774 0.93965 1.21384 0.94207 0.99132 1.03384 1.21583 1.01349 0.90409 0.95194 1.18491 0.90238 0.93817 1.10914 1.22102 0.93400 0.97198 0.89917 1.22877 0.94236 0.97675 1.09269 1.18791 0.82636 0.89904 0.75581 1.90762 1.72819 1.31445 1.53051 1.46039 1.05506 1.10163 1.73456 1.21468 0.91279 0.86715 0.96030 0.90888 1.22729 0.97587 0.99973 0.96165 1.22221 0.92920 0.98207 0.99291 1.19441 0.92277 0.94998 0.91221 0.98261 1.21554 1.05673 1.13605 1.15519 0.92143 1.25798 1.00630 0.97258 0.95280 1.70106 1.32928 1.33786 1.19339 0.85622 0.79548 0.79871 0.76998 1.20476 1.21433 1.18697 1.22436 0.92195 1.01775 0.98409 0.91175 0.86922 0.91093 0.82913 0.82550 0.82986 0.83305 0.86875 0.82311 0.75080 0.92133 0.92716 0.93987 0.94526 0.93259 0.90798 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.94 9.68 -90.04 -0.87 -7.81 16 3 C 0.13 2.66 6.70 22.88 0.15 2.82 16 4 C -0.22 -2.97 9.03 22.33 0.20 -2.76 16 5 C -0.06 -0.72 10.03 22.32 0.22 -0.50 16 6 C -0.16 -2.03 10.02 22.24 0.22 -1.80 16 7 C -0.07 -1.11 9.41 22.56 0.21 -0.90 16 8 C -0.13 -2.90 5.88 -20.07 -0.12 -3.02 16 9 C -0.01 -0.16 9.21 23.81 0.22 0.06 16 10 C -0.22 -5.60 9.41 23.60 0.22 -5.38 16 11 C 0.54 17.95 7.73 86.32 0.67 18.62 16 12 O -0.60 -24.71 15.89 -4.41 -0.07 -24.78 16 13 N -0.70 -22.34 5.03 -443.47 -2.23 -24.57 16 14 C 0.15 5.58 3.25 45.72 0.15 5.73 16 15 H 0.07 2.81 7.56 -2.39 -0.02 2.80 16 16 C -0.13 -5.10 6.54 31.67 0.21 -4.89 16 17 C -0.09 -4.16 5.75 31.89 0.18 -3.97 16 18 C 0.04 1.94 2.71 -10.47 -0.03 1.91 16 19 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 20 C -0.53 -28.06 8.47 25.60 0.22 -27.85 16 21 H 0.06 3.09 7.54 -2.91 -0.02 3.07 16 22 C 0.01 0.48 5.35 84.65 0.45 0.94 16 23 N -0.92 -53.81 12.29 21.45 0.26 -53.54 16 24 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 28 C -0.11 -4.35 6.13 31.32 0.19 -4.16 16 29 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.52 7.66 -2.39 -0.02 0.51 16 32 H 0.15 1.26 6.30 -2.91 -0.02 1.24 16 33 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.15 1.92 6.17 -2.91 -0.02 1.90 16 36 H 0.11 3.49 7.10 -2.91 -0.02 3.46 16 37 H 0.16 2.87 6.07 -2.91 -0.02 2.85 16 38 H 0.41 11.07 8.30 -92.71 -0.77 10.31 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 41 H 0.04 1.98 8.06 -2.38 -0.02 1.96 16 42 H 0.04 1.92 7.55 -2.39 -0.02 1.90 16 43 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.07 2.73 7.13 -2.38 -0.02 2.72 16 45 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -71.42 371.31 3.84 -67.58 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.23 Total: 21.98 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.49 Total: -23.86 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.97 Total: -78.11 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.94 Total: -32.59 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -71.42 3.84 -67.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493657602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.629 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds