Wall clock time and date at job start Tue Mar 31 2020 10:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21230 * 120.00485 * 2 1 4 4 C 1.47282 * 119.99754 * 180.02562 * 2 1 3 5 5 C 1.39484 * 120.22432 * 6.29824 * 4 2 1 6 6 C 1.38164 * 119.96940 * 180.27831 * 5 4 2 7 7 C 1.38393 * 120.41936 * 359.69711 * 6 5 4 8 8 C 1.38288 * 120.44636 * 0.02562 * 7 6 5 9 9 C 1.39136 * 120.01922 * 0.02562 * 8 7 6 10 10 C 1.47967 * 120.20069 * 179.97438 * 9 8 7 11 11 O 1.21532 * 119.99435 * 243.34501 * 10 9 8 12 12 N 1.34768 * 120.00153 * 63.35244 * 10 9 8 13 13 C 1.46929 * 120.63215 * 175.64420 * 12 10 9 14 14 C 1.53196 * 108.77583 * 233.58813 * 13 12 10 15 15 C 1.53040 * 109.30825 * 305.36354 * 14 13 12 16 16 C 1.53009 * 109.45813 * 181.38677 * 15 14 13 17 17 C 1.50698 * 109.47010 * 64.93100 * 16 15 14 18 18 H 1.08006 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00019 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99787 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00026 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47172 * 60.00125 * 21 19 17 23 23 H 1.48498 * 109.47281 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47346 * 300.00095 * 21 19 17 25 25 C 1.53037 * 109.54403 * 61.36723 * 15 14 13 26 26 C 1.46932 * 120.63037 * 355.61815 * 12 10 9 27 27 H 1.08998 * 109.47266 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46943 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47184 * 59.99247 * 1 2 3 30 30 H 1.08004 * 120.01824 * 359.97438 * 5 4 2 31 31 H 1.08000 * 119.79330 * 179.71840 * 6 5 4 32 32 H 1.07994 * 119.77810 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.98611 * 179.97438 * 8 7 6 34 34 H 1.08993 * 109.58432 * 353.36964 * 13 12 10 35 35 H 1.08997 * 109.58819 * 113.79667 * 13 12 10 36 36 H 1.09001 * 109.49784 * 65.30967 * 14 13 12 37 37 H 1.08992 * 109.49485 * 185.41405 * 14 13 12 38 38 H 1.08999 * 109.46274 * 301.33956 * 15 14 13 39 39 H 1.08997 * 109.47174 * 184.93001 * 16 15 14 40 40 H 1.08998 * 109.46658 * 304.93047 * 16 15 14 41 41 H 0.96998 * 119.99627 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.50398 * 178.68235 * 25 15 14 43 43 H 1.09005 * 109.52566 * 58.59747 * 25 15 14 44 44 H 1.08999 * 109.58746 * 246.19947 * 26 12 10 45 45 H 1.08997 * 109.58391 * 6.48972 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0498 0.0000 4 6 2.2433 -1.2755 -0.0006 5 6 1.5569 -2.4825 -0.1333 6 6 2.2524 -3.6763 -0.1274 7 6 3.6301 -3.6840 0.0034 8 6 4.3286 -2.4973 0.1304 9 6 3.6466 -1.2845 0.1278 10 6 4.3899 -0.0123 0.2640 11 8 4.2002 0.7019 1.2288 12 7 5.2771 0.3544 -0.6819 13 6 5.9523 1.6574 -0.6101 14 6 5.7409 2.3960 -1.9355 15 6 6.2099 1.5078 -3.0902 16 6 6.0323 2.2557 -4.4131 17 6 6.9421 3.4569 -4.4371 18 1 7.5825 3.6663 -3.5930 19 6 6.9561 4.2893 -5.5362 20 7 6.1759 4.0347 -6.5638 21 14 8.0832 5.7786 -5.5655 22 1 9.4940 5.3344 -5.4340 23 1 7.9101 6.5052 -6.8490 24 1 7.7411 6.6807 -4.4367 25 6 5.3806 0.2218 -3.1163 26 6 5.5879 -0.5414 -1.8043 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 0.4817 -2.4842 -0.2358 31 1 1.7176 -4.6094 -0.2258 32 1 4.1633 -4.6231 0.0063 33 1 5.4036 -2.5119 0.2324 34 1 5.5298 2.2433 0.2061 35 1 7.0186 1.5075 -0.4413 36 1 4.6825 2.6251 -2.0595 37 1 6.3161 3.3217 -1.9318 38 1 7.2620 1.2587 -2.9526 39 1 6.2834 1.5933 -5.2415 40 1 4.9969 2.5821 -4.5098 41 1 6.1855 4.6205 -7.3369 42 1 5.6994 -0.3998 -3.9530 43 1 4.3255 0.4710 -3.2295 44 1 6.6246 -0.8705 -1.7329 45 1 4.9266 -1.4074 -1.7745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515848271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:31 Heat of formation + Delta-G solvation = -53.794602 kcal Electronic energy + Delta-G solvation = -26674.386295 eV Core-core repulsion = 23042.445344 eV Total energy + Delta-G solvation = -3631.940951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83896 -39.16778 -38.20913 -37.10499 -33.97642 -32.47967 -32.14955 -31.58897 -30.40747 -29.53029 -27.99397 -24.99463 -24.21155 -23.54240 -22.60928 -21.63067 -20.35187 -19.75064 -18.81543 -17.53238 -16.67472 -16.29297 -16.13845 -15.83243 -15.06270 -15.02759 -14.67964 -14.65322 -14.49166 -14.14347 -13.81340 -13.56084 -13.16449 -12.95081 -12.84448 -12.60918 -12.44236 -12.26320 -12.19795 -12.07012 -11.80351 -11.69265 -11.13300 -10.97466 -10.70314 -10.63868 -10.39503 -10.12812 -9.81560 -9.66997 -9.59411 -9.34869 -9.23990 -9.16353 -8.91954 -8.32052 -8.24806 -5.96751 -3.98307 0.34959 0.83892 2.27145 2.79886 3.15951 3.35422 3.39817 3.42360 3.52271 3.81526 4.36095 4.43261 4.48566 4.59683 4.74491 4.95264 5.00796 5.13035 5.16226 5.23510 5.32651 5.38550 5.41377 5.50022 5.57515 5.65334 5.69579 5.73937 5.85575 5.89767 6.00104 6.02775 6.06312 6.15572 6.40324 6.41761 6.46450 6.60575 6.74567 7.05585 7.08836 7.17226 7.46018 7.63080 7.69496 7.85266 8.03059 8.37314 8.46006 9.07764 9.65247 11.14598 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.003291 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.041963 B = 8505.781417 C = 8729.790904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.375 3.625 3 O -0.418 6.418 4 C -0.131 4.131 5 C -0.079 4.079 6 C -0.120 4.120 7 C -0.093 4.093 8 C -0.104 4.104 9 C -0.062 4.062 10 C 0.563 3.437 11 O -0.525 6.525 12 N -0.597 5.597 13 C 0.113 3.887 14 C -0.117 4.117 15 C -0.080 4.080 16 C 0.029 3.971 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.129 4.129 26 C 0.104 3.896 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -18.766 12.908 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.250 3.750 3 O -0.290 6.290 4 C -0.132 4.132 5 C -0.097 4.097 6 C -0.138 4.138 7 C -0.111 4.111 8 C -0.123 4.123 9 C -0.065 4.065 10 C 0.350 3.650 11 O -0.402 6.402 12 N -0.330 5.330 13 C -0.008 4.008 14 C -0.155 4.155 15 C -0.099 4.099 16 C -0.008 4.008 17 C -0.554 4.554 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.167 4.167 26 C -0.019 4.019 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.313 -17.716 13.247 24.002 hybrid contribution 0.552 0.638 -0.294 0.893 sum -8.762 -17.078 12.954 23.156 Atomic orbital electron populations 1.22198 0.93482 1.04471 1.05170 1.22539 0.91824 0.87730 0.72906 1.90692 1.71285 1.33756 1.33243 1.20592 0.92640 0.95823 1.04187 1.21485 1.00351 0.91120 0.96785 1.21280 0.94439 0.98161 0.99908 1.21354 0.94485 0.98053 0.97200 1.21282 1.00487 0.91091 0.99421 1.20209 0.93308 0.94523 0.98454 1.18052 0.78936 0.84943 0.83067 1.90756 1.65183 1.53085 1.31129 1.48004 1.41917 1.18861 1.24234 1.21767 0.95982 0.82990 1.00083 1.21883 1.02053 0.99163 0.92406 1.21190 0.97585 0.93184 0.97903 1.19112 0.97097 0.94481 0.90141 1.21211 1.22777 1.09540 1.01870 0.92631 1.25014 0.95767 0.97901 0.95751 1.69955 1.38878 1.38384 1.06380 0.86702 0.81270 0.83104 0.77199 1.20301 1.21384 1.20245 1.22014 1.01341 0.98124 0.95220 1.21916 1.00686 0.92566 0.86722 0.90041 0.88753 0.88625 0.84292 0.84969 0.84899 0.84823 0.89623 0.91907 0.92246 0.89808 0.92365 0.96667 0.96679 0.93042 0.91158 0.92143 0.91426 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 10.19 36.00 0.37 -1.29 16 2 C 0.38 5.07 7.17 -30.63 -0.22 4.85 16 3 O -0.42 -7.75 14.10 -17.06 -0.24 -8.00 16 4 C -0.13 -1.59 5.89 -104.74 -0.62 -2.21 16 5 C -0.08 -0.64 9.42 -39.14 -0.37 -1.01 16 6 C -0.12 -0.81 10.03 -39.55 -0.40 -1.21 16 7 C -0.09 -0.69 10.03 -39.51 -0.40 -1.08 16 8 C -0.10 -1.05 7.80 -39.23 -0.31 -1.36 16 9 C -0.06 -0.84 4.58 -104.56 -0.48 -1.31 16 10 C 0.56 9.70 5.42 -12.28 -0.07 9.64 16 11 O -0.53 -10.88 14.88 -17.32 -0.26 -11.14 16 12 N -0.60 -9.84 2.97 -173.83 -0.52 -10.36 16 13 C 0.11 1.98 6.42 -3.71 -0.02 1.95 16 14 C -0.12 -2.32 5.19 -26.61 -0.14 -2.45 16 15 C -0.08 -1.62 2.10 -90.58 -0.19 -1.81 16 16 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 17 C -0.52 -14.39 8.39 -34.44 -0.29 -14.68 16 18 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 26 C 0.10 1.47 6.00 -3.70 -0.02 1.44 16 27 H 0.08 0.43 5.65 -51.93 -0.29 0.13 16 28 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.14 0.69 5.98 -52.48 -0.31 0.38 16 31 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.13 1.18 8.01 -52.49 -0.42 0.76 16 34 H 0.09 1.59 7.03 -51.93 -0.37 1.23 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.74 6.91 -51.93 -0.36 1.38 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.94 5.18 -51.93 -0.27 0.67 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -35.86 361.66 -9.96 -45.82 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.60 Total: -1.52 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.51 Total: -10.72 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.22 Total: -36.68 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.50 Total: -19.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.86 -9.96 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515848271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.974 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds