Wall clock time and date at job start Tue Mar 31 2020 10:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21230 * 120.00485 * 2 1 4 4 C 1.47282 * 119.99754 * 180.02562 * 2 1 3 5 5 C 1.39484 * 120.22432 * 6.29824 * 4 2 1 6 6 C 1.38164 * 119.96940 * 180.27831 * 5 4 2 7 7 C 1.38393 * 120.41936 * 359.69711 * 6 5 4 8 8 C 1.38288 * 120.44636 * 0.02562 * 7 6 5 9 9 C 1.39136 * 120.01922 * 0.02562 * 8 7 6 10 10 C 1.47967 * 120.20069 * 179.97438 * 9 8 7 11 11 O 1.21532 * 119.99435 * 243.34501 * 10 9 8 12 12 N 1.34768 * 120.00153 * 63.35244 * 10 9 8 13 13 C 1.46929 * 120.63215 * 175.64420 * 12 10 9 14 14 C 1.53196 * 108.77583 * 233.58813 * 13 12 10 15 15 C 1.53040 * 109.30825 * 305.36354 * 14 13 12 16 16 C 1.53009 * 109.45813 * 181.38677 * 15 14 13 17 17 C 1.50698 * 109.47010 * 64.93100 * 16 15 14 18 18 H 1.08006 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00019 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99787 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00026 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47172 * 60.00125 * 21 19 17 23 23 H 1.48498 * 109.47281 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47346 * 300.00095 * 21 19 17 25 25 C 1.53037 * 109.54403 * 61.36723 * 15 14 13 26 26 C 1.46932 * 120.63037 * 355.61815 * 12 10 9 27 27 H 1.08998 * 109.47266 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46943 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47184 * 59.99247 * 1 2 3 30 30 H 1.08004 * 120.01824 * 359.97438 * 5 4 2 31 31 H 1.08000 * 119.79330 * 179.71840 * 6 5 4 32 32 H 1.07994 * 119.77810 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.98611 * 179.97438 * 8 7 6 34 34 H 1.08993 * 109.58432 * 353.36964 * 13 12 10 35 35 H 1.08997 * 109.58819 * 113.79667 * 13 12 10 36 36 H 1.09001 * 109.49784 * 65.30967 * 14 13 12 37 37 H 1.08992 * 109.49485 * 185.41405 * 14 13 12 38 38 H 1.08999 * 109.46274 * 301.33956 * 15 14 13 39 39 H 1.08997 * 109.47174 * 184.93001 * 16 15 14 40 40 H 1.08998 * 109.46658 * 304.93047 * 16 15 14 41 41 H 0.96998 * 119.99627 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.50398 * 178.68235 * 25 15 14 43 43 H 1.09005 * 109.52566 * 58.59747 * 25 15 14 44 44 H 1.08999 * 109.58746 * 246.19947 * 26 12 10 45 45 H 1.08997 * 109.58391 * 6.48972 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0498 0.0000 4 6 2.2433 -1.2755 -0.0006 5 6 1.5569 -2.4825 -0.1333 6 6 2.2524 -3.6763 -0.1274 7 6 3.6301 -3.6840 0.0034 8 6 4.3286 -2.4973 0.1304 9 6 3.6466 -1.2845 0.1278 10 6 4.3899 -0.0123 0.2640 11 8 4.2002 0.7019 1.2288 12 7 5.2771 0.3544 -0.6819 13 6 5.9523 1.6574 -0.6101 14 6 5.7409 2.3960 -1.9355 15 6 6.2099 1.5078 -3.0902 16 6 6.0323 2.2557 -4.4131 17 6 6.9421 3.4569 -4.4371 18 1 7.5825 3.6663 -3.5930 19 6 6.9561 4.2893 -5.5362 20 7 6.1759 4.0347 -6.5638 21 14 8.0832 5.7786 -5.5655 22 1 9.4940 5.3344 -5.4340 23 1 7.9101 6.5052 -6.8490 24 1 7.7411 6.6807 -4.4367 25 6 5.3806 0.2218 -3.1163 26 6 5.5879 -0.5414 -1.8043 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 0.4817 -2.4842 -0.2358 31 1 1.7176 -4.6094 -0.2258 32 1 4.1633 -4.6231 0.0063 33 1 5.4036 -2.5119 0.2324 34 1 5.5298 2.2433 0.2061 35 1 7.0186 1.5075 -0.4413 36 1 4.6825 2.6251 -2.0595 37 1 6.3161 3.3217 -1.9318 38 1 7.2620 1.2587 -2.9526 39 1 6.2834 1.5933 -5.2415 40 1 4.9969 2.5821 -4.5098 41 1 6.1855 4.6205 -7.3369 42 1 5.6994 -0.3998 -3.9530 43 1 4.3255 0.4710 -3.2295 44 1 6.6246 -0.8705 -1.7329 45 1 4.9266 -1.4074 -1.7745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515848271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:30 Heat of formation + Delta-G solvation = -74.855762 kcal Electronic energy + Delta-G solvation = -26675.299575 eV Core-core repulsion = 23042.445344 eV Total energy + Delta-G solvation = -3632.854231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87684 -40.36593 -39.10434 -38.55913 -35.74087 -34.09300 -33.17741 -32.69317 -31.65311 -30.23677 -29.81465 -26.59465 -25.31229 -24.49928 -24.02332 -23.12164 -21.55522 -20.90922 -20.09431 -18.71102 -18.33988 -17.64324 -17.26129 -16.87116 -16.56322 -16.03999 -15.87725 -15.86312 -15.42217 -15.33303 -15.00729 -14.98208 -14.60614 -14.50873 -14.13175 -13.90402 -13.73803 -13.33327 -13.05945 -13.04558 -12.99258 -12.94742 -12.78381 -12.51332 -12.36570 -12.33011 -12.16799 -11.85894 -11.38797 -11.12621 -11.07328 -10.83578 -10.71431 -10.53888 -10.02637 -9.94481 -9.63803 -8.18705 -6.28112 -0.45188 0.16400 1.38499 1.41447 1.42509 1.48752 1.57312 2.02626 2.40692 2.75508 3.01763 3.14551 3.37672 3.76071 3.86736 3.96903 4.03022 4.04507 4.11394 4.15652 4.32183 4.34864 4.40660 4.46769 4.51077 4.57625 4.60477 4.71357 4.73857 4.82013 4.92789 4.98070 5.03167 5.05198 5.22943 5.24982 5.28054 5.32377 5.32583 5.42345 5.51270 5.55737 5.76595 5.85142 5.86374 6.26859 6.37631 6.53773 6.87519 7.11520 7.40202 8.93110 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.003291 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.041963 B = 8505.781417 C = 8729.790904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.365 3.635 3 O -0.489 6.489 4 C -0.163 4.163 5 C -0.067 4.067 6 C -0.108 4.108 7 C -0.080 4.080 8 C -0.110 4.110 9 C -0.097 4.097 10 C 0.559 3.441 11 O -0.574 6.574 12 N -0.603 5.603 13 C 0.122 3.878 14 C -0.107 4.107 15 C -0.071 4.071 16 C 0.035 3.965 17 C -0.532 4.532 18 H 0.063 0.937 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.123 4.123 26 C 0.111 3.889 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.174 0.826 31 H 0.175 0.825 32 H 0.170 0.830 33 H 0.143 0.857 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.070 0.930 39 H -0.004 1.004 40 H -0.022 1.022 41 H 0.262 0.738 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.096 0.904 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -22.580 13.477 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.245 3.755 3 O -0.367 6.367 4 C -0.164 4.164 5 C -0.085 4.085 6 C -0.125 4.125 7 C -0.098 4.098 8 C -0.129 4.129 9 C -0.100 4.100 10 C 0.348 3.652 11 O -0.454 6.454 12 N -0.335 5.335 13 C -0.001 4.001 14 C -0.145 4.145 15 C -0.090 4.090 16 C -0.002 4.002 17 C -0.570 4.570 18 H 0.081 0.919 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.784 3.216 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.161 4.161 26 C -0.010 4.010 27 H 0.139 0.861 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.191 0.809 31 H 0.193 0.807 32 H 0.188 0.812 33 H 0.161 0.839 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.014 0.986 40 H -0.004 1.004 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.114 0.886 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.309 -21.580 13.812 27.260 hybrid contribution 0.459 1.713 -0.488 1.839 sum -8.850 -19.867 13.324 25.506 Atomic orbital electron populations 1.22246 0.89842 1.07156 1.05398 1.23531 0.94151 0.87566 0.70288 1.90669 1.72936 1.36059 1.37008 1.20744 0.92373 0.96723 1.06581 1.21890 1.02009 0.89870 0.94712 1.21842 0.94402 0.99128 0.97155 1.21827 0.95076 0.98209 0.94651 1.21474 1.01163 0.90750 0.99477 1.20106 0.94009 0.93638 1.02233 1.18764 0.78250 0.86022 0.82141 1.90701 1.66352 1.55184 1.33179 1.48114 1.41922 1.18504 1.24921 1.21548 0.97328 0.83647 0.97544 1.21713 0.99663 0.99069 0.94065 1.21036 0.98927 0.94195 0.94793 1.18992 0.94432 0.94289 0.92479 1.21640 1.22961 1.10304 1.02050 0.91925 1.25943 0.97380 1.01160 0.95378 1.70095 1.40598 1.39775 1.07109 0.85585 0.79583 0.79125 0.77288 1.18820 1.21005 1.19683 1.21922 0.99257 0.96997 0.97901 1.22024 1.02955 0.92202 0.83848 0.86090 0.88356 0.88330 0.80917 0.80739 0.81214 0.83942 0.91499 0.89499 0.95363 0.91246 0.91164 0.98596 1.00353 0.92948 0.89534 0.94347 0.88629 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 10.19 71.24 0.73 -2.30 16 2 C 0.36 10.22 7.17 28.07 0.20 10.42 16 3 O -0.49 -19.88 14.10 18.79 0.26 -19.61 16 4 C -0.16 -3.80 5.89 -19.94 -0.12 -3.92 16 5 C -0.07 -0.82 9.42 22.55 0.21 -0.60 16 6 C -0.11 -0.84 10.03 22.29 0.22 -0.62 16 7 C -0.08 -0.78 10.03 22.32 0.22 -0.55 16 8 C -0.11 -1.92 7.80 22.50 0.18 -1.75 16 9 C -0.10 -2.58 4.58 -19.83 -0.09 -2.67 16 10 C 0.56 20.07 5.42 86.82 0.47 20.55 16 11 O -0.57 -25.57 14.88 17.85 0.27 -25.31 16 12 N -0.60 -20.32 2.97 -822.17 -2.44 -22.77 16 13 C 0.12 4.44 6.42 86.36 0.55 4.99 16 14 C -0.11 -4.50 5.19 30.67 0.16 -4.34 16 15 C -0.07 -2.95 2.10 -10.76 -0.02 -2.98 16 16 C 0.04 1.89 4.45 29.85 0.13 2.02 16 17 C -0.53 -30.50 8.39 25.60 0.21 -30.29 16 18 H 0.06 3.43 7.06 -2.91 -0.02 3.41 16 19 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 20 N -0.94 -58.13 13.29 21.45 0.28 -57.84 16 21 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 25 C -0.12 -4.19 5.36 30.67 0.16 -4.02 16 26 C 0.11 3.01 6.00 86.36 0.52 3.53 16 27 H 0.12 0.86 5.65 -2.39 -0.01 0.84 16 28 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.17 0.79 5.98 -2.91 -0.02 0.77 16 31 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 32 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.14 2.12 8.01 -2.91 -0.02 2.10 16 34 H 0.07 2.69 7.03 -2.39 -0.02 2.68 16 35 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 3.06 6.91 -2.39 -0.02 3.04 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 40 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.10 2.28 5.18 -2.39 -0.01 2.27 16 Total: -1.00 -86.87 361.66 5.59 -81.27 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.99 Total: 9.05 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.21 Total: -12.14 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.16 Total: -80.61 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: 0.53 Total: -44.92 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -86.87 5.59 -81.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515848271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.418 kcal (2) G-P(sol) polarization free energy of solvation -86.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds