Wall clock time and date at job start Tue Mar 31 2020 11:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48492 * 109.47248 * 271.36293 * 3 2 1 5 5 H 1.48493 * 109.47047 * 31.36706 * 3 2 1 6 6 H 1.48501 * 109.46895 * 151.36503 * 3 2 1 7 7 C 1.37877 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99899 * 358.87434 * 7 2 1 9 9 C 1.50703 * 120.00341 * 178.87917 * 7 2 1 10 10 C 1.53002 * 115.55169 * 87.22113 * 9 7 2 11 11 N 1.46493 * 109.46980 * 66.59549 * 10 9 7 12 12 C 1.34784 * 120.00095 * 175.42611 * 11 10 9 13 13 O 1.21583 * 119.99215 * 5.73858 * 12 11 10 14 14 N 1.34768 * 120.00452 * 185.74467 * 12 11 10 15 15 C 1.39400 * 119.99916 * 184.70339 * 14 12 11 16 16 C 1.38910 * 119.79338 * 339.19534 * 15 14 12 17 17 C 1.38753 * 119.28623 * 179.97438 * 16 15 14 18 18 C 1.38087 * 118.56776 * 359.80609 * 17 16 15 19 19 C 1.38612 * 119.04012 * 0.28574 * 18 17 16 20 20 N 1.31745 * 121.13722 * 359.79995 * 19 18 17 21 21 C 1.50485 * 122.47673 * 180.34211 * 18 17 16 22 22 C 1.52796 * 110.47513 * 342.27343 * 21 18 17 23 23 C 1.53313 * 108.52947 * 51.10205 * 22 21 18 24 24 C 1.50355 * 118.64457 * 179.51328 * 17 16 15 25 25 C 1.53002 * 117.49549 * 232.89233 * 9 7 2 26 26 C 1.53000 * 117.49311 * 301.55122 * 9 7 2 27 27 H 0.96992 * 119.99840 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46543 * 306.59650 * 10 9 7 29 29 H 1.08995 * 109.46845 * 186.59674 * 10 9 7 30 30 H 0.96998 * 120.00692 * 355.42752 * 11 10 9 31 31 H 0.97004 * 119.99698 * 4.69301 * 14 12 11 32 32 H 1.08004 * 120.35458 * 0.02562 * 16 15 14 33 33 H 1.08010 * 119.43156 * 179.78467 * 19 18 17 34 34 H 1.09001 * 109.30361 * 102.57613 * 21 18 17 35 35 H 1.09001 * 109.30457 * 221.96098 * 21 18 17 36 36 H 1.09002 * 109.62717 * 170.82068 * 22 21 18 37 37 H 1.09008 * 109.62289 * 291.39068 * 22 21 18 38 38 H 1.09003 * 109.63223 * 170.42487 * 23 22 21 39 39 H 1.08991 * 109.64720 * 49.80349 * 23 22 21 40 40 H 1.09000 * 109.30558 * 282.99302 * 24 17 16 41 41 H 1.08999 * 109.30823 * 42.39159 * 24 17 16 42 42 H 1.09000 * 117.49370 * 214.99484 * 25 9 7 43 43 H 1.09001 * 117.50025 * 0.02562 * 25 9 7 44 44 H 1.08994 * 117.50241 * 359.97261 * 26 9 7 45 45 H 1.09003 * 117.49378 * 144.97971 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4678 2.0632 -1.3996 5 1 1.4613 2.6441 0.7287 6 1 3.5608 1.4321 0.6710 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1293 0.0174 9 6 3.5114 -1.1941 -0.0261 10 6 4.1946 -1.1144 1.3406 11 7 3.9229 -2.3406 2.0946 12 6 4.5017 -2.5351 3.2962 13 8 5.1652 -1.6505 3.8016 14 7 4.3451 -3.7102 3.9374 15 6 4.8605 -3.8774 5.2217 16 6 5.8764 -3.0437 5.6718 17 6 6.3813 -3.2191 6.9522 18 6 5.8494 -4.2206 7.7403 19 6 4.8381 -5.0165 7.2253 20 7 4.3784 -4.8292 6.0049 21 6 6.3252 -4.4833 9.1435 22 6 7.6890 -3.8347 9.3757 23 6 7.6100 -2.3659 8.9431 24 6 7.4882 -2.3159 7.4206 25 6 4.1994 -2.0230 -1.1126 26 6 4.1980 -0.4948 -1.2010 27 1 -0.4849 0.8400 -0.0004 28 1 3.8078 -0.2564 1.8906 29 1 5.2701 -1.0031 1.2032 30 1 3.3265 -3.0126 1.7292 31 1 3.8737 -4.4394 3.5051 32 1 6.2684 -2.2667 5.0322 33 1 4.4199 -5.8039 7.8349 34 1 5.6054 -4.0716 9.8511 35 1 6.4061 -5.5588 9.3012 36 1 7.9463 -3.8916 10.4334 37 1 8.4452 -4.3505 8.7838 38 1 8.5139 -1.8430 9.2557 39 1 6.7366 -1.8970 9.3961 40 1 8.4289 -2.6367 6.9730 41 1 7.2749 -1.2932 7.1096 42 1 5.1388 -2.5115 -0.8537 43 1 3.5622 -2.5679 -1.8091 44 1 3.5599 -0.0351 -1.9557 45 1 5.1363 0.0223 -1.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517064640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:12 Heat of formation + Delta-G solvation = 27.310173 kcal Electronic energy + Delta-G solvation = -25731.172945 eV Core-core repulsion = 22135.041712 eV Total energy + Delta-G solvation = -3596.131232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05286 -39.65290 -37.46526 -36.87811 -34.36860 -33.78209 -32.52978 -32.16867 -30.95314 -28.70224 -26.66223 -25.26823 -24.42708 -23.06085 -22.75698 -21.81355 -20.85487 -19.81983 -19.33138 -18.24588 -17.51040 -16.34393 -16.24716 -15.65785 -15.46230 -15.19604 -14.91932 -14.62287 -14.49289 -14.07993 -14.03900 -13.82625 -13.34342 -13.15521 -12.86769 -12.69658 -12.54197 -12.47671 -12.35824 -12.13343 -11.20766 -11.18131 -11.15387 -10.86775 -10.79987 -10.56628 -10.41108 -10.21984 -9.80951 -9.64628 -9.40029 -9.27360 -9.24848 -8.73517 -8.64520 -8.52495 -7.98148 -6.19685 -4.25223 1.18539 1.33140 2.62629 3.25241 3.27197 3.36532 3.40765 3.91944 4.26393 4.36164 4.45706 4.49879 4.65110 4.66628 4.82419 4.89153 4.95007 5.08886 5.21262 5.30717 5.33345 5.39035 5.51029 5.59597 5.60661 5.73132 5.74288 5.86017 5.95517 5.98272 6.01072 6.03741 6.08167 6.16133 6.29370 6.36177 6.38412 6.51926 6.64528 6.88872 6.91395 7.01343 7.04956 7.10237 7.62634 7.96381 8.28583 8.36141 8.75032 8.80013 9.42928 10.91544 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.002805 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.836935 B = 9981.034621 C =10194.249874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.494 4.494 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.173 3.827 11 N -0.708 5.708 12 C 0.705 3.295 13 O -0.580 6.580 14 N -0.669 5.669 15 C 0.371 3.629 16 C -0.189 4.189 17 C -0.018 4.018 18 C -0.165 4.165 19 C 0.126 3.874 20 N -0.520 5.520 21 C -0.069 4.069 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.083 4.083 25 C -0.178 4.178 26 C -0.191 4.191 27 H 0.266 0.734 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.405 0.595 31 H 0.412 0.588 32 H 0.178 0.822 33 H 0.155 0.845 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 -8.622 15.141 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.531 4.531 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.049 3.951 11 N -0.360 5.360 12 C 0.405 3.595 13 O -0.459 6.459 14 N -0.316 5.316 15 C 0.142 3.858 16 C -0.212 4.212 17 C -0.026 4.026 18 C -0.169 4.169 19 C -0.033 4.033 20 N -0.234 5.234 21 C -0.107 4.107 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.120 4.120 25 C -0.215 4.215 26 C -0.229 4.229 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.240 0.760 31 H 0.248 0.752 32 H 0.194 0.806 33 H 0.172 0.828 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.410 -8.159 15.108 22.416 hybrid contribution 0.191 0.738 -0.223 0.794 sum 14.601 -7.421 14.885 22.132 Atomic orbital electron populations 1.69881 1.06419 1.27347 1.49373 1.24981 0.94596 0.99210 0.93531 0.86845 0.80753 0.83255 0.78431 1.20382 1.21999 1.18066 1.20185 0.86010 0.94556 1.52313 0.90372 1.19613 0.95368 1.00995 0.85844 1.21140 0.97264 0.84794 0.91893 1.45070 1.49092 1.24056 1.17788 1.15831 0.80827 0.81399 0.81444 1.90710 1.45349 1.43133 1.66701 1.42381 1.59307 1.15532 1.14416 1.17971 0.90417 0.92336 0.85124 1.22865 0.97508 1.03169 0.97632 1.19806 0.95598 0.94229 0.93006 1.20369 1.00305 0.98419 0.97785 1.22339 0.93152 0.97604 0.90207 1.66943 1.28996 1.21587 1.05911 1.20284 0.96980 1.00938 0.92513 1.21555 0.97050 0.95938 1.01164 1.21566 1.02201 0.96782 0.95147 1.20462 0.96461 0.98994 0.96041 1.22849 1.01043 0.93007 1.04595 1.22961 1.01383 0.95054 1.03454 0.92413 0.91626 0.93452 0.76000 0.75235 0.80556 0.82807 0.90815 0.90845 0.91471 0.91650 0.91337 0.91522 0.90184 0.90007 0.90859 0.89349 0.89070 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.07 24.84 -169.99 -4.22 16.85 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -5.85 5.80 56.52 0.33 -5.53 16 7 C -0.49 -12.71 9.25 -34.44 -0.32 -13.03 16 8 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 9 C -0.02 -0.36 0.82 -155.66 -0.13 -0.49 16 10 C 0.17 3.50 5.10 -4.04 -0.02 3.48 16 11 N -0.71 -12.73 5.50 -65.23 -0.36 -13.09 16 12 C 0.71 12.65 8.46 -86.92 -0.74 11.91 16 13 O -0.58 -11.79 13.02 5.29 0.07 -11.72 16 14 N -0.67 -10.26 5.42 -15.84 -0.09 -10.35 16 15 C 0.37 5.86 7.52 -154.75 -1.16 4.69 16 16 C -0.19 -2.91 8.53 -39.14 -0.33 -3.24 16 17 C -0.02 -0.23 5.74 -104.65 -0.60 -0.83 16 18 C -0.17 -1.86 5.74 -104.64 -0.60 -2.46 16 19 C 0.13 1.51 10.79 -17.45 -0.19 1.33 16 20 N -0.52 -7.66 10.39 -12.30 -0.13 -7.78 16 21 C -0.07 -0.55 5.71 -28.09 -0.16 -0.71 16 22 C -0.12 -0.85 5.97 -26.67 -0.16 -1.01 16 23 C -0.12 -0.94 5.98 -26.66 -0.16 -1.10 16 24 C -0.08 -0.83 5.71 -28.14 -0.16 -0.99 16 25 C -0.18 -3.28 9.96 -26.69 -0.27 -3.55 16 26 C -0.19 -3.78 7.56 -26.69 -0.20 -3.98 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.07 1.49 6.79 -51.93 -0.35 1.13 16 29 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.40 6.74 8.41 -40.82 -0.34 6.40 16 31 H 0.41 5.30 8.85 -40.82 -0.36 4.94 16 32 H 0.18 3.01 5.15 -52.96 -0.27 2.73 16 33 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.47 8.10 -51.92 -0.42 0.05 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.09 1.91 7.22 -51.93 -0.38 1.53 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -30.82 359.83 -10.65 -41.46 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.82 Total: 12.56 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -5.29 Total: -7.87 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.20 Total: -56.70 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.22 Total: 16.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.82 -10.65 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517064640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.772 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds