Wall clock time and date at job start Tue Mar 31 2020 11:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48492 * 109.47248 * 271.36293 * 3 2 1 5 5 H 1.48493 * 109.47047 * 31.36706 * 3 2 1 6 6 H 1.48501 * 109.46895 * 151.36503 * 3 2 1 7 7 C 1.37877 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99899 * 358.87434 * 7 2 1 9 9 C 1.50703 * 120.00341 * 178.87917 * 7 2 1 10 10 C 1.53002 * 115.55169 * 87.22113 * 9 7 2 11 11 N 1.46493 * 109.46980 * 66.59549 * 10 9 7 12 12 C 1.34784 * 120.00095 * 175.42611 * 11 10 9 13 13 O 1.21583 * 119.99215 * 5.73858 * 12 11 10 14 14 N 1.34768 * 120.00452 * 185.74467 * 12 11 10 15 15 C 1.39400 * 119.99916 * 184.70339 * 14 12 11 16 16 C 1.38910 * 119.79338 * 339.19534 * 15 14 12 17 17 C 1.38753 * 119.28623 * 179.97438 * 16 15 14 18 18 C 1.38087 * 118.56776 * 359.80609 * 17 16 15 19 19 C 1.38612 * 119.04012 * 0.28574 * 18 17 16 20 20 N 1.31745 * 121.13722 * 359.79995 * 19 18 17 21 21 C 1.50485 * 122.47673 * 180.34211 * 18 17 16 22 22 C 1.52796 * 110.47513 * 342.27343 * 21 18 17 23 23 C 1.53313 * 108.52947 * 51.10205 * 22 21 18 24 24 C 1.50355 * 118.64457 * 179.51328 * 17 16 15 25 25 C 1.53002 * 117.49549 * 232.89233 * 9 7 2 26 26 C 1.53000 * 117.49311 * 301.55122 * 9 7 2 27 27 H 0.96992 * 119.99840 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46543 * 306.59650 * 10 9 7 29 29 H 1.08995 * 109.46845 * 186.59674 * 10 9 7 30 30 H 0.96998 * 120.00692 * 355.42752 * 11 10 9 31 31 H 0.97004 * 119.99698 * 4.69301 * 14 12 11 32 32 H 1.08004 * 120.35458 * 0.02562 * 16 15 14 33 33 H 1.08010 * 119.43156 * 179.78467 * 19 18 17 34 34 H 1.09001 * 109.30361 * 102.57613 * 21 18 17 35 35 H 1.09001 * 109.30457 * 221.96098 * 21 18 17 36 36 H 1.09002 * 109.62717 * 170.82068 * 22 21 18 37 37 H 1.09008 * 109.62289 * 291.39068 * 22 21 18 38 38 H 1.09003 * 109.63223 * 170.42487 * 23 22 21 39 39 H 1.08991 * 109.64720 * 49.80349 * 23 22 21 40 40 H 1.09000 * 109.30558 * 282.99302 * 24 17 16 41 41 H 1.08999 * 109.30823 * 42.39159 * 24 17 16 42 42 H 1.09000 * 117.49370 * 214.99484 * 25 9 7 43 43 H 1.09001 * 117.50025 * 0.02562 * 25 9 7 44 44 H 1.08994 * 117.50241 * 359.97261 * 26 9 7 45 45 H 1.09003 * 117.49378 * 144.97971 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4678 2.0632 -1.3996 5 1 1.4613 2.6441 0.7287 6 1 3.5608 1.4321 0.6710 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1293 0.0174 9 6 3.5114 -1.1941 -0.0261 10 6 4.1946 -1.1144 1.3406 11 7 3.9229 -2.3406 2.0946 12 6 4.5017 -2.5351 3.2962 13 8 5.1652 -1.6505 3.8016 14 7 4.3451 -3.7102 3.9374 15 6 4.8605 -3.8774 5.2217 16 6 5.8764 -3.0437 5.6718 17 6 6.3813 -3.2191 6.9522 18 6 5.8494 -4.2206 7.7403 19 6 4.8381 -5.0165 7.2253 20 7 4.3784 -4.8292 6.0049 21 6 6.3252 -4.4833 9.1435 22 6 7.6890 -3.8347 9.3757 23 6 7.6100 -2.3659 8.9431 24 6 7.4882 -2.3159 7.4206 25 6 4.1994 -2.0230 -1.1126 26 6 4.1980 -0.4948 -1.2010 27 1 -0.4849 0.8400 -0.0004 28 1 3.8078 -0.2564 1.8906 29 1 5.2701 -1.0031 1.2032 30 1 3.3265 -3.0126 1.7292 31 1 3.8737 -4.4394 3.5051 32 1 6.2684 -2.2667 5.0322 33 1 4.4199 -5.8039 7.8349 34 1 5.6054 -4.0716 9.8511 35 1 6.4061 -5.5588 9.3012 36 1 7.9463 -3.8916 10.4334 37 1 8.4452 -4.3505 8.7838 38 1 8.5139 -1.8430 9.2557 39 1 6.7366 -1.8970 9.3961 40 1 8.4289 -2.6367 6.9730 41 1 7.2749 -1.2932 7.1096 42 1 5.1388 -2.5115 -0.8537 43 1 3.5622 -2.5679 -1.8091 44 1 3.5599 -0.0351 -1.9557 45 1 5.1363 0.0223 -1.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517064640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:11 Heat of formation + Delta-G solvation = 8.081267 kcal Electronic energy + Delta-G solvation = -25732.006773 eV Core-core repulsion = 22135.041712 eV Total energy + Delta-G solvation = -3596.965060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.18698 -40.87387 -38.95525 -37.89436 -35.59475 -35.23556 -34.22647 -33.42564 -31.82799 -29.72543 -28.29786 -27.05149 -25.33120 -24.03183 -23.63667 -23.34257 -22.14841 -21.18089 -20.56201 -19.60105 -18.79590 -18.07195 -17.32744 -16.99414 -16.68295 -16.64328 -16.11890 -15.94963 -15.53116 -15.34636 -15.06993 -14.76131 -14.72404 -14.68043 -14.25856 -13.98603 -13.85370 -13.51148 -13.37627 -13.09824 -13.08503 -12.68787 -12.18425 -11.97195 -11.90890 -11.79912 -11.59482 -11.52185 -11.49543 -11.03741 -10.99600 -10.69705 -10.42935 -10.37926 -10.29241 -10.03834 -9.08986 -8.30778 -6.37917 0.13966 0.31096 1.31616 1.35545 1.40747 1.50682 1.91900 2.36183 2.84470 2.91133 3.05243 3.33804 3.58674 3.73673 3.85580 3.97228 4.01115 4.03742 4.06719 4.36137 4.40599 4.41471 4.50030 4.54846 4.59946 4.67313 4.71614 4.76653 4.87811 4.92415 4.96620 5.05119 5.10030 5.11621 5.16298 5.28073 5.30544 5.36658 5.45481 5.48494 5.50812 5.61341 5.68792 5.75265 5.93719 6.26980 6.70281 6.76741 7.07118 7.32747 7.35963 8.83914 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.002805 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.836935 B = 9981.034621 C =10194.249874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.304 1.304 6 H -0.237 1.237 7 C -0.481 4.481 8 H 0.044 0.956 9 C -0.041 4.041 10 C 0.183 3.817 11 N -0.707 5.707 12 C 0.706 3.294 13 O -0.606 6.606 14 N -0.660 5.660 15 C 0.343 3.657 16 C -0.211 4.211 17 C -0.025 4.025 18 C -0.157 4.157 19 C 0.120 3.880 20 N -0.535 5.535 21 C -0.070 4.070 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.084 4.084 25 C -0.151 4.151 26 C -0.189 4.189 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.410 0.590 31 H 0.421 0.579 32 H 0.156 0.844 33 H 0.189 0.811 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.382 -9.584 16.926 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.174 4.174 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.232 1.232 6 H -0.160 1.160 7 C -0.519 4.519 8 H 0.062 0.938 9 C -0.042 4.042 10 C 0.059 3.941 11 N -0.359 5.359 12 C 0.406 3.594 13 O -0.487 6.487 14 N -0.308 5.308 15 C 0.115 3.885 16 C -0.233 4.233 17 C -0.033 4.033 18 C -0.160 4.160 19 C -0.039 4.039 20 N -0.249 5.249 21 C -0.107 4.107 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.121 4.121 25 C -0.188 4.188 26 C -0.227 4.227 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.246 0.754 31 H 0.259 0.741 32 H 0.173 0.827 33 H 0.206 0.794 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.115 -9.166 16.894 25.736 hybrid contribution -0.632 0.895 -0.673 1.286 sum 16.483 -8.271 16.220 24.560 Atomic orbital electron populations 1.70021 1.08204 1.27932 1.52377 1.25753 0.95118 1.02668 0.93860 0.86009 0.80206 0.79187 0.78977 1.19090 1.23190 1.16047 1.20384 0.88649 0.92886 1.49937 0.93766 1.19428 0.92859 1.04620 0.87289 1.20864 0.97795 0.84630 0.90823 1.44949 1.49406 1.23649 1.17946 1.15861 0.80494 0.81793 0.81264 1.90710 1.46386 1.44271 1.67284 1.42165 1.59130 1.14926 1.14560 1.18117 0.91404 0.93545 0.85430 1.22765 0.98424 1.03266 0.98883 1.20154 0.96042 0.94925 0.92157 1.20803 0.99096 0.96869 0.99208 1.23027 0.93043 0.98246 0.89551 1.66973 1.29564 1.21406 1.06997 1.20419 0.97630 1.02590 0.90062 1.21576 0.96494 0.94860 1.02554 1.21581 1.02859 0.97915 0.93084 1.20533 0.95832 0.97775 0.97954 1.22875 1.01509 0.92477 1.01961 1.23036 1.01843 0.96244 1.01556 0.92689 0.94446 0.91743 0.75404 0.74122 0.82695 0.79436 0.89638 0.88622 0.89206 0.91681 0.89640 0.91965 0.89332 0.91118 0.87796 0.89673 0.90297 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.68 13.96 21.45 0.30 -57.38 16 2 C 0.02 1.34 5.47 84.65 0.46 1.81 16 3 Si 0.93 43.72 24.84 68.60 1.70 45.42 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.24 -10.32 5.80 99.48 0.58 -9.75 16 7 C -0.48 -25.27 9.25 25.60 0.24 -25.03 16 8 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 9 C -0.04 -1.69 0.82 -52.93 -0.04 -1.74 16 10 C 0.18 7.28 5.10 86.38 0.44 7.72 16 11 N -0.71 -25.46 5.50 -478.55 -2.63 -28.09 16 12 C 0.71 25.69 8.46 179.05 1.51 27.21 16 13 O -0.61 -25.20 13.02 -3.98 -0.05 -25.25 16 14 N -0.66 -20.58 5.42 -322.30 -1.75 -22.33 16 15 C 0.34 10.94 7.52 132.89 1.00 11.94 16 16 C -0.21 -6.61 8.53 22.55 0.19 -6.41 16 17 C -0.02 -0.61 5.74 -19.89 -0.11 -0.72 16 18 C -0.16 -3.18 5.74 -19.88 -0.11 -3.30 16 19 C 0.12 2.65 10.79 84.80 0.91 3.56 16 20 N -0.53 -15.38 10.39 -192.84 -2.00 -17.39 16 21 C -0.07 -0.84 5.71 29.71 0.17 -0.67 16 22 C -0.12 -1.24 5.97 30.63 0.18 -1.06 16 23 C -0.12 -1.55 5.98 30.64 0.18 -1.37 16 24 C -0.08 -1.60 5.71 29.68 0.17 -1.43 16 25 C -0.15 -5.21 9.96 30.62 0.30 -4.90 16 26 C -0.19 -7.02 7.56 30.62 0.23 -6.79 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.04 1.69 6.79 -2.39 -0.02 1.67 16 29 H 0.06 2.35 8.08 -2.39 -0.02 2.33 16 30 H 0.41 13.77 8.41 -92.71 -0.78 12.99 16 31 H 0.42 11.00 8.85 -92.71 -0.82 10.18 16 32 H 0.16 5.53 5.15 -10.41 -0.05 5.48 16 33 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.79 8.13 -2.39 -0.02 0.78 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.72 8.10 -2.38 -0.02 0.70 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.08 3.14 7.22 -2.39 -0.02 3.13 16 45 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -69.33 359.83 0.56 -68.77 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.75 Total: 37.43 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.73 Total: -1.18 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.08 Total: -125.19 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.05 Total: -25.25 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.70 Total: 45.42 kcal Total: -69.33 0.56 -68.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517064640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.851 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds