Wall clock time and date at job start Tue Mar 31 2020 11:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35974 * 116.99961 * 2 1 4 4 C 1.39191 * 119.92121 * 359.97170 * 3 2 1 5 5 C 1.37775 * 120.63400 * 179.97438 * 4 3 2 6 6 C 1.38933 * 120.03662 * 0.05158 * 5 4 3 7 7 O 1.34925 * 133.33275 * 180.34307 * 6 5 4 8 8 C 1.34434 * 110.87959 * 180.10246 * 7 6 5 9 9 C 1.50701 * 124.92013 * 179.81508 * 8 7 6 10 10 N 1.46906 * 109.46965 * 269.69544 * 9 8 7 11 11 C 1.46850 * 110.99915 * 45.78965 * 10 9 8 12 12 C 1.53032 * 109.52098 * 185.84118 * 11 10 9 13 13 C 1.53119 * 109.28205 * 300.81949 * 12 11 10 14 14 C 1.50700 * 109.57842 * 177.59011 * 13 12 11 15 15 H 1.07997 * 119.99940 * 240.28424 * 14 13 12 16 16 C 1.37878 * 119.99512 * 60.28875 * 14 13 12 17 17 N 1.31513 * 120.00163 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47407 * 59.99561 * 18 16 14 20 20 H 1.48501 * 109.47207 * 180.02562 * 18 16 14 21 21 H 1.48511 * 109.47019 * 299.99964 * 18 16 14 22 22 C 1.53124 * 109.15796 * 57.65213 * 13 12 11 23 23 C 1.46844 * 110.99887 * 170.00048 * 10 9 8 24 24 C 1.34000 * 110.15577 * 359.54865 * 8 7 6 25 25 C 1.40445 * 119.41047 * 359.97047 * 6 5 4 26 26 C 1.38171 * 119.91924 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47076 * 300.00440 * 1 2 3 28 28 H 1.08995 * 109.46957 * 60.00231 * 1 2 3 29 29 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.68506 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.98164 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.47133 * 149.69582 * 9 8 7 33 33 H 1.08996 * 109.47320 * 29.69322 * 9 8 7 34 34 H 1.09005 * 109.46314 * 305.85713 * 11 10 9 35 35 H 1.08998 * 109.46244 * 65.82281 * 11 10 9 36 36 H 1.09004 * 109.50441 * 180.87586 * 12 11 10 37 37 H 1.09002 * 109.53781 * 60.78566 * 12 11 10 38 38 H 1.09001 * 109.51997 * 297.75401 * 13 12 11 39 39 H 0.96999 * 119.99924 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.50392 * 182.40446 * 22 13 12 41 41 H 1.09008 * 109.53016 * 62.31007 * 22 13 12 42 42 H 1.08995 * 109.46267 * 294.17336 * 23 10 9 43 43 H 1.09000 * 109.46172 * 54.15831 * 23 10 9 44 44 H 1.08000 * 126.90198 * 180.28965 * 24 8 7 45 45 H 1.08003 * 120.21992 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2867 2.3778 -0.0006 5 6 1.8968 3.6131 -0.0001 6 6 3.2832 3.7040 0.0000 7 8 4.1429 4.7438 0.0063 8 6 5.4163 4.3128 0.0008 9 6 6.6296 5.2066 0.0014 10 7 7.0243 5.4973 -1.3834 11 6 5.8573 5.8581 -2.1986 12 6 6.2825 6.0113 -3.6607 13 6 7.3562 7.0980 -3.7638 14 6 7.8223 7.2135 -5.1923 15 1 8.8589 7.0364 -5.4380 16 6 6.9252 7.5453 -6.1854 17 7 5.6628 7.7605 -5.8861 18 14 7.5027 7.6877 -7.9561 19 1 8.0642 6.3865 -8.3999 20 1 6.3541 8.0534 -8.8235 21 1 8.5491 8.7370 -8.0526 22 6 8.5398 6.7217 -2.8682 23 6 8.0492 6.5479 -1.4290 24 6 5.4503 2.9732 0.0006 25 6 4.0514 2.5283 0.0001 26 6 3.4263 1.2819 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2086 2.3139 -0.0006 31 1 1.2971 4.5113 -0.0001 32 1 7.4498 4.7054 0.5154 33 1 6.3941 6.1385 0.5153 34 1 5.1031 5.0750 -2.1198 35 1 5.4415 6.7999 -1.8406 36 1 5.4192 6.2943 -4.2630 37 1 6.6854 5.0659 -4.0241 38 1 6.9415 8.0519 -3.4377 39 1 5.0316 7.9936 -6.5848 40 1 9.2892 7.5123 -2.9042 41 1 8.9791 5.7875 -3.2183 42 1 7.6231 7.4865 -1.0747 43 1 8.8871 6.2658 -0.7915 44 1 6.3301 2.3468 0.0011 45 1 4.0167 0.3776 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542853484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:55 Heat of formation + Delta-G solvation = -7.023368 kcal Electronic energy + Delta-G solvation = -25917.177503 eV Core-core repulsion = 22287.264705 eV Total energy + Delta-G solvation = -3629.912798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44076 -39.80464 -38.25776 -36.55327 -34.27036 -32.80819 -31.58164 -30.28900 -29.82124 -29.35297 -27.34391 -26.58367 -24.60296 -22.92527 -22.12470 -21.79560 -21.51345 -20.51384 -18.59341 -18.16939 -17.48799 -16.59764 -16.33806 -16.17395 -15.86068 -15.41296 -14.93486 -14.43026 -14.39971 -14.30196 -13.58490 -13.47298 -13.23070 -13.00665 -12.82214 -12.67105 -12.58433 -12.35090 -12.20498 -11.94998 -11.71634 -11.41103 -11.00276 -10.92635 -10.86023 -10.73385 -10.49009 -10.22933 -10.11938 -9.97107 -9.42978 -8.96515 -8.70661 -8.28341 -8.26996 -8.05238 -7.81725 -5.94574 -4.00119 0.79348 1.32732 2.35901 2.72031 3.05716 3.34726 3.39260 3.41988 3.60213 4.36200 4.45684 4.48589 4.57293 4.72119 4.88150 4.89576 4.93473 5.14918 5.18887 5.20985 5.35370 5.41158 5.43160 5.60113 5.67452 5.78036 5.84666 5.96856 6.07224 6.08579 6.18304 6.21164 6.29358 6.33430 6.46166 6.61708 6.62589 6.84777 7.05507 7.09487 7.13504 7.28847 7.40927 7.56401 7.61498 7.82519 8.06199 8.17485 8.50252 9.03298 9.64146 11.11581 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.003010 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.754092 B = 9299.357401 C =10410.285068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.107 3.893 4 C -0.180 4.180 5 C -0.065 4.065 6 C 0.022 3.978 7 O -0.191 6.191 8 C 0.062 3.938 9 C 0.123 3.877 10 N -0.530 5.530 11 C 0.057 3.943 12 C -0.103 4.103 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.106 4.106 23 C 0.060 3.940 24 C -0.200 4.200 25 C -0.086 4.086 26 C -0.111 4.111 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.020 0.980 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.160 0.840 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 -11.549 15.621 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.062 3.938 4 C -0.199 4.199 5 C -0.083 4.083 6 C -0.025 4.025 7 O -0.093 6.093 8 C 0.014 3.986 9 C -0.004 4.004 10 N -0.256 5.256 11 C -0.070 4.070 12 C -0.141 4.141 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.144 4.144 23 C -0.067 4.067 24 C -0.220 4.220 25 C -0.087 4.087 26 C -0.130 4.130 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.178 0.822 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.031 -11.818 15.332 20.958 hybrid contribution -0.425 0.820 -0.706 1.162 sum -8.456 -10.999 14.626 20.159 Atomic orbital electron populations 1.23047 0.78493 1.03883 1.01355 1.86075 1.21232 1.26541 1.89288 1.18641 0.91823 0.84169 0.99150 1.20937 1.00015 0.90987 1.07952 1.19670 0.89194 0.98185 1.01267 1.19488 0.91762 0.85172 1.06106 1.84039 1.14885 1.33939 1.76452 1.22227 0.83166 0.93973 0.99248 1.20808 0.90071 0.96578 0.92979 1.62320 1.12637 1.43953 1.06664 1.22350 0.90440 0.97648 0.96608 1.21660 1.02411 0.99279 0.90741 1.18690 0.90659 0.93996 0.93751 1.21158 0.94969 1.46653 0.92143 0.92760 1.24974 0.94954 0.95279 0.98821 1.69868 1.02419 1.47906 1.32886 0.86693 0.78087 0.78497 0.84909 1.20297 1.21392 1.20377 1.21683 0.99741 1.00570 0.92391 1.22166 0.93538 0.91330 0.99688 1.22128 0.95321 0.93727 1.10820 1.19641 0.93479 0.92877 1.02742 1.19559 0.91107 0.96712 1.05610 0.92716 0.92571 0.88302 0.84437 0.84739 0.87733 0.93212 0.92527 0.95698 0.88939 0.93799 0.96144 0.93052 0.92919 0.92320 0.95399 0.92022 0.82243 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.46 10.49 -19.66 -0.21 -3.66 16 3 C 0.11 1.30 6.68 -39.25 -0.26 1.03 16 4 C -0.18 -1.97 9.01 -39.40 -0.36 -2.32 16 5 C -0.06 -0.80 10.05 -39.49 -0.40 -1.20 16 6 C 0.02 0.33 7.41 -38.49 -0.29 0.04 16 7 O -0.19 -3.13 9.80 3.62 0.04 -3.09 16 8 C 0.06 0.94 4.92 -35.80 -0.18 0.76 16 9 C 0.12 1.75 5.78 -4.97 -0.03 1.72 16 10 N -0.53 -9.40 4.80 -236.12 -1.13 -10.54 16 11 C 0.06 1.16 4.97 -3.83 -0.02 1.15 16 12 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 13 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 14 C -0.51 -14.12 8.57 -34.44 -0.29 -14.42 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 17 N -0.89 -25.73 11.37 55.43 0.63 -25.10 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.11 -2.20 5.32 -26.65 -0.14 -2.34 16 23 C 0.06 1.04 5.42 -3.84 -0.02 1.02 16 24 C -0.20 -2.84 11.01 -37.62 -0.41 -3.26 16 25 C -0.09 -1.26 6.39 -105.16 -0.67 -1.93 16 26 C -0.11 -1.46 10.03 -39.16 -0.39 -1.85 16 27 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 28 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.14 1.07 6.26 -52.49 -0.33 0.75 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.06 1.17 6.03 -51.93 -0.31 0.86 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 2.51 6.17 -51.93 -0.32 2.19 16 37 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 44 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 45 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -30.89 360.62 -9.95 -40.83 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.79 Total: 0.10 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -2.90 Total: -20.46 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.50 Total: -35.64 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.17 Total: -6.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.89 -9.95 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542853484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.811 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds