Wall clock time and date at job start Tue Mar 31 2020 11:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35974 * 116.99961 * 2 1 4 4 C 1.39191 * 119.92121 * 359.97170 * 3 2 1 5 5 C 1.37775 * 120.63400 * 179.97438 * 4 3 2 6 6 C 1.38933 * 120.03662 * 0.05158 * 5 4 3 7 7 O 1.34925 * 133.33275 * 180.34307 * 6 5 4 8 8 C 1.34434 * 110.87959 * 180.10246 * 7 6 5 9 9 C 1.50701 * 124.92013 * 179.81508 * 8 7 6 10 10 N 1.46906 * 109.46965 * 269.69544 * 9 8 7 11 11 C 1.46850 * 110.99915 * 45.78965 * 10 9 8 12 12 C 1.53032 * 109.52098 * 185.84118 * 11 10 9 13 13 C 1.53119 * 109.28205 * 300.81949 * 12 11 10 14 14 C 1.50700 * 109.57842 * 177.59011 * 13 12 11 15 15 H 1.07997 * 119.99940 * 240.28424 * 14 13 12 16 16 C 1.37878 * 119.99512 * 60.28875 * 14 13 12 17 17 N 1.31513 * 120.00163 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47407 * 59.99561 * 18 16 14 20 20 H 1.48501 * 109.47207 * 180.02562 * 18 16 14 21 21 H 1.48511 * 109.47019 * 299.99964 * 18 16 14 22 22 C 1.53124 * 109.15796 * 57.65213 * 13 12 11 23 23 C 1.46844 * 110.99887 * 170.00048 * 10 9 8 24 24 C 1.34000 * 110.15577 * 359.54865 * 8 7 6 25 25 C 1.40445 * 119.41047 * 359.97047 * 6 5 4 26 26 C 1.38171 * 119.91924 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47076 * 300.00440 * 1 2 3 28 28 H 1.08995 * 109.46957 * 60.00231 * 1 2 3 29 29 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.68506 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.98164 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.47133 * 149.69582 * 9 8 7 33 33 H 1.08996 * 109.47320 * 29.69322 * 9 8 7 34 34 H 1.09005 * 109.46314 * 305.85713 * 11 10 9 35 35 H 1.08998 * 109.46244 * 65.82281 * 11 10 9 36 36 H 1.09004 * 109.50441 * 180.87586 * 12 11 10 37 37 H 1.09002 * 109.53781 * 60.78566 * 12 11 10 38 38 H 1.09001 * 109.51997 * 297.75401 * 13 12 11 39 39 H 0.96999 * 119.99924 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.50392 * 182.40446 * 22 13 12 41 41 H 1.09008 * 109.53016 * 62.31007 * 22 13 12 42 42 H 1.08995 * 109.46267 * 294.17336 * 23 10 9 43 43 H 1.09000 * 109.46172 * 54.15831 * 23 10 9 44 44 H 1.08000 * 126.90198 * 180.28965 * 24 8 7 45 45 H 1.08003 * 120.21992 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2867 2.3778 -0.0006 5 6 1.8968 3.6131 -0.0001 6 6 3.2832 3.7040 0.0000 7 8 4.1429 4.7438 0.0063 8 6 5.4163 4.3128 0.0008 9 6 6.6296 5.2066 0.0014 10 7 7.0243 5.4973 -1.3834 11 6 5.8573 5.8581 -2.1986 12 6 6.2825 6.0113 -3.6607 13 6 7.3562 7.0980 -3.7638 14 6 7.8223 7.2135 -5.1923 15 1 8.8589 7.0364 -5.4380 16 6 6.9252 7.5453 -6.1854 17 7 5.6628 7.7605 -5.8861 18 14 7.5027 7.6877 -7.9561 19 1 8.0642 6.3865 -8.3999 20 1 6.3541 8.0534 -8.8235 21 1 8.5491 8.7370 -8.0526 22 6 8.5398 6.7217 -2.8682 23 6 8.0492 6.5479 -1.4290 24 6 5.4503 2.9732 0.0006 25 6 4.0514 2.5283 0.0001 26 6 3.4263 1.2819 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2086 2.3139 -0.0006 31 1 1.2971 4.5113 -0.0001 32 1 7.4498 4.7054 0.5154 33 1 6.3941 6.1385 0.5153 34 1 5.1031 5.0750 -2.1198 35 1 5.4415 6.7999 -1.8406 36 1 5.4192 6.2943 -4.2630 37 1 6.6854 5.0659 -4.0241 38 1 6.9415 8.0519 -3.4377 39 1 5.0316 7.9936 -6.5848 40 1 9.2892 7.5123 -2.9042 41 1 8.9791 5.7875 -3.2183 42 1 7.6231 7.4865 -1.0747 43 1 8.8871 6.2658 -0.7915 44 1 6.3301 2.3468 0.0011 45 1 4.0167 0.3776 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542853484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:54 Heat of formation + Delta-G solvation = -25.083690 kcal Electronic energy + Delta-G solvation = -25917.960657 eV Core-core repulsion = 22287.264705 eV Total energy + Delta-G solvation = -3630.695952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.49871 -40.66437 -39.79148 -37.49033 -35.98221 -34.12403 -33.18962 -31.52017 -31.25668 -30.58163 -28.20958 -27.89162 -26.19997 -24.18576 -23.67299 -23.14978 -22.63179 -21.70053 -20.35785 -19.03607 -18.50424 -18.45771 -17.61030 -17.28915 -16.71991 -16.52995 -16.37852 -16.05904 -15.79188 -15.31585 -14.89526 -14.78693 -14.41165 -14.30954 -14.18879 -14.15078 -13.76830 -13.43128 -13.34462 -13.25310 -13.03616 -12.83530 -12.72545 -12.56763 -12.27389 -12.02789 -11.89398 -11.81151 -11.73889 -11.37845 -11.16413 -10.81185 -10.68807 -10.38674 -9.42065 -9.14172 -9.01186 -8.07877 -6.21618 -0.19305 0.33667 1.29264 1.41038 1.42769 1.50154 1.70838 2.30177 2.43743 2.62441 3.05699 3.19146 3.38751 3.65797 3.84772 3.99538 4.11830 4.16318 4.20159 4.25853 4.35883 4.36682 4.43565 4.45351 4.50566 4.55565 4.65777 4.75857 4.76013 4.83785 4.86577 4.96354 5.01159 5.07250 5.15767 5.19227 5.21878 5.31772 5.40456 5.45914 5.54744 5.61387 5.95228 5.96739 6.10967 6.17745 6.24834 6.39701 6.40178 6.90521 7.46327 8.96573 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.003010 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.754092 B = 9299.357401 C =10410.285068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.107 3.893 4 C -0.170 4.170 5 C -0.074 4.074 6 C -0.008 4.008 7 O -0.212 6.212 8 C 0.039 3.961 9 C 0.127 3.873 10 N -0.535 5.535 11 C 0.077 3.923 12 C -0.093 4.093 13 C 0.043 3.957 14 C -0.532 4.532 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.920 5.920 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.270 1.270 22 C -0.100 4.100 23 C 0.065 3.935 24 C -0.196 4.196 25 C -0.106 4.106 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.011 0.989 36 H 0.056 0.944 37 H 0.029 0.971 38 H -0.013 1.013 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.026 0.974 43 H 0.104 0.896 44 H 0.180 0.820 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -12.829 16.620 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.061 3.939 4 C -0.188 4.188 5 C -0.092 4.092 6 C -0.055 4.055 7 O -0.115 6.115 8 C -0.009 4.009 9 C 0.000 4.000 10 N -0.261 5.261 11 C -0.051 4.051 12 C -0.131 4.131 13 C 0.025 3.975 14 C -0.570 4.570 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.559 5.559 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.138 4.138 23 C -0.062 4.062 24 C -0.216 4.216 25 C -0.107 4.107 26 C -0.145 4.145 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.189 0.811 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.006 0.994 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.122 0.878 44 H 0.197 0.803 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.963 -13.108 16.347 22.415 hybrid contribution -0.577 1.116 -0.992 1.601 sum -8.540 -11.992 15.355 21.272 Atomic orbital electron populations 1.23401 0.76193 1.05803 1.02485 1.86070 1.23628 1.25885 1.88947 1.18799 0.91789 0.85114 0.98171 1.21312 1.01647 0.89915 1.05935 1.20047 0.88533 0.99618 1.01024 1.19977 0.92816 0.85186 1.07503 1.83988 1.15596 1.34878 1.77061 1.22442 0.83146 0.94547 1.00747 1.20963 0.91030 0.97277 0.90692 1.62238 1.11321 1.43686 1.08806 1.21950 0.91556 0.96892 0.94728 1.21406 1.00713 0.98042 0.92954 1.18669 0.92488 0.92600 0.93749 1.21574 0.95071 1.46614 0.93775 0.92748 1.25787 0.95051 0.95030 1.03018 1.70028 1.03410 1.48533 1.33974 0.85677 0.77749 0.78735 0.79893 1.19691 1.21121 1.19465 1.21551 0.97960 1.00434 0.93834 1.22141 0.94674 0.91498 0.97887 1.22450 0.95952 0.93717 1.09494 1.19867 0.93821 0.93371 1.03632 1.19765 0.92059 0.96597 1.06099 0.91204 0.91711 0.86197 0.81063 0.83036 0.84101 0.92459 0.92827 0.97061 0.92545 0.95219 0.99445 0.93190 0.92140 0.92690 0.95537 0.87751 0.80301 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.57 10.49 -93.26 -0.98 -7.55 16 3 C 0.11 2.44 6.68 22.48 0.15 2.59 16 4 C -0.17 -3.40 9.01 22.39 0.20 -3.20 16 5 C -0.07 -1.78 10.05 22.33 0.22 -1.56 16 6 C -0.01 -0.25 7.41 22.97 0.17 -0.08 16 7 O -0.21 -7.05 9.80 -9.97 -0.10 -7.15 16 8 C 0.04 1.15 4.92 24.72 0.12 1.27 16 9 C 0.13 3.37 5.78 85.56 0.49 3.86 16 10 N -0.53 -18.37 4.80 -900.94 -4.32 -22.69 16 11 C 0.08 3.23 4.97 86.32 0.43 3.66 16 12 C -0.09 -4.69 5.12 30.64 0.16 -4.53 16 13 C 0.04 2.24 2.16 -11.46 -0.02 2.22 16 14 C -0.53 -30.08 8.57 25.60 0.22 -29.86 16 15 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 16 C 0.01 0.53 5.31 84.66 0.45 0.98 16 17 N -0.92 -54.89 11.37 21.45 0.24 -54.65 16 18 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 C -0.10 -4.09 5.32 30.65 0.16 -3.93 16 23 C 0.06 2.13 5.42 86.33 0.47 2.60 16 24 C -0.20 -5.44 11.01 23.54 0.26 -5.18 16 25 C -0.11 -3.08 6.39 -20.22 -0.13 -3.21 16 26 C -0.13 -3.25 10.03 22.54 0.23 -3.02 16 27 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 28 H 0.06 0.58 7.65 -2.39 -0.02 0.56 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.17 2.13 6.26 -2.91 -0.02 2.11 16 31 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.05 2.29 6.03 -2.38 -0.01 2.27 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 3.24 6.17 -2.38 -0.01 3.22 16 37 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 2.61 8.12 -2.39 -0.02 2.60 16 44 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 45 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -69.64 360.62 2.54 -67.10 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.98 Total: 14.39 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 4.69 Total: -36.12 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -4.08 Total: -77.34 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.08 Total: -14.70 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -69.64 2.54 -67.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542853484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.018 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds