Wall clock time and date at job start Tue Mar 31 2020 10:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20760 * 119.99903 * 2 1 4 4 C 1.50696 * 120.00192 * 179.97438 * 2 1 3 5 5 C 1.52998 * 109.47006 * 175.60770 * 4 2 1 6 6 C 1.50704 * 112.84826 * 294.01381 * 5 4 2 7 7 O 1.21286 * 119.99989 * 113.73689 * 6 5 4 8 8 N 1.34777 * 120.00181 * 293.74032 * 6 5 4 9 9 C 1.46498 * 120.00169 * 174.81177 * 8 6 5 10 10 C 1.50696 * 109.47383 * 179.97438 * 9 8 6 11 11 C 1.38635 * 119.75322 * 269.73277 * 10 9 8 12 12 C 1.37623 * 120.24904 * 179.72004 * 11 10 9 13 13 C 1.40714 * 119.74058 * 0.56669 * 12 11 10 14 14 C 1.41403 * 120.23951 * 179.68311 * 13 12 11 15 15 H 1.07999 * 120.00148 * 159.08258 * 14 13 12 16 16 C 1.39946 * 119.99863 * 339.07747 * 14 13 12 17 17 N 1.30816 * 120.00368 * 333.02746 * 16 14 13 18 18 Si 1.86798 * 119.99759 * 153.02300 * 16 14 13 19 19 H 1.48500 * 109.47135 * 94.98476 * 18 16 14 20 20 H 1.48496 * 109.47265 * 214.98752 * 18 16 14 21 21 H 1.48503 * 109.47295 * 334.98711 * 18 16 14 22 22 C 1.40714 * 119.51647 * 359.70689 * 13 12 11 23 23 C 1.37615 * 119.74277 * 359.97438 * 22 13 12 24 24 C 1.53786 * 113.61336 * 162.71374 * 5 4 2 25 25 C 1.53783 * 87.07970 * 220.01379 * 24 5 4 26 26 C 1.53777 * 113.61897 * 65.21183 * 5 4 2 27 27 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47347 * 300.00410 * 1 2 3 29 29 H 1.09005 * 109.47127 * 60.00312 * 1 2 3 30 30 H 1.09006 * 109.46954 * 295.60500 * 4 2 1 31 31 H 1.08999 * 109.47296 * 55.60036 * 4 2 1 32 32 H 0.97000 * 119.99557 * 354.81262 * 8 6 5 33 33 H 1.09000 * 109.47263 * 300.00119 * 9 8 6 34 34 H 1.09002 * 109.47128 * 60.00180 * 9 8 6 35 35 H 1.08000 * 119.87182 * 359.97438 * 11 10 9 36 36 H 1.08001 * 120.12639 * 180.27643 * 12 11 10 37 37 H 0.97000 * 120.00567 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.12561 * 179.97438 * 22 13 12 39 39 H 1.08002 * 119.87248 * 180.02562 * 23 22 13 40 40 H 1.08996 * 113.61393 * 334.56159 * 24 5 4 41 41 H 1.09004 * 113.61459 * 105.46830 * 24 5 4 42 42 H 1.09004 * 113.61494 * 270.88601 * 25 24 5 43 43 H 1.08999 * 113.61786 * 139.97942 * 25 24 5 44 44 H 1.09002 * 113.61472 * 254.53037 * 26 5 4 45 45 H 1.08997 * 113.61079 * 25.43328 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 6 3.7611 -1.0276 -0.1100 6 6 4.1471 -0.4152 -1.4318 7 8 4.5714 0.7203 -1.4733 8 7 4.0207 -1.1292 -2.5679 9 6 4.2872 -0.4985 -3.8630 10 6 4.0761 -1.5047 -4.9648 11 6 5.1365 -2.2881 -5.3935 12 6 4.9538 -3.2142 -6.3950 13 6 3.6876 -3.3559 -6.9922 14 6 3.4897 -4.2995 -8.0266 15 1 2.4945 -4.6533 -8.2517 16 6 4.5836 -4.7748 -8.7588 17 7 5.6539 -4.0343 -8.8908 18 14 4.5153 -6.4667 -9.5475 19 1 4.0773 -6.3369 -10.9605 20 1 5.8629 -7.0888 -9.5022 21 1 3.5513 -7.3196 -8.8069 22 6 2.6199 -2.5515 -6.5529 23 6 2.8241 -1.6365 -5.5454 24 6 4.6401 -2.2217 0.2979 25 6 5.5691 -1.2039 0.9804 26 6 4.3417 -0.2858 1.1055 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.0576 -1.8414 0.9276 31 1 1.9395 -1.9104 -0.8471 32 1 3.7533 -2.0608 -2.5279 33 1 3.6086 0.3428 -4.0039 34 1 5.3172 -0.1428 -3.8888 35 1 6.1086 -2.1739 -4.9371 36 1 5.7802 -3.8266 -6.7244 37 1 6.4119 -4.3636 -9.3986 38 1 1.6442 -2.6517 -7.0047 39 1 2.0060 -1.0183 -5.2064 40 1 4.1534 -2.9043 0.9945 41 1 5.0998 -2.7343 -0.5472 42 1 6.3437 -0.8099 0.3224 43 1 5.9597 -1.5438 1.9395 44 1 4.5605 0.7645 0.9124 45 1 3.7734 -0.4392 2.0228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565023610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:37 Heat of formation + Delta-G solvation = -49.594025 kcal Electronic energy + Delta-G solvation = -25901.843724 eV Core-core repulsion = 22270.084924 eV Total energy + Delta-G solvation = -3631.758800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.93285 -38.89574 -37.89639 -37.07423 -34.68184 -33.45584 -31.73985 -30.44028 -29.41218 -29.28157 -27.06723 -25.66267 -24.60787 -23.36202 -21.39813 -21.09451 -20.12245 -19.75943 -18.82419 -17.42693 -16.73490 -15.95751 -15.89718 -15.45506 -15.36947 -15.22659 -14.75798 -14.51702 -14.16930 -13.94078 -13.55523 -13.36420 -13.13731 -12.68737 -12.61937 -12.57867 -12.46104 -12.06513 -12.03651 -11.94787 -11.70487 -11.61900 -11.20643 -11.12503 -10.97867 -10.67849 -10.62977 -10.57438 -10.34348 -9.75267 -9.54570 -9.52918 -9.43318 -9.13564 -8.57851 -7.59762 -7.52121 -6.98354 -4.46188 1.92860 2.56621 2.93703 2.96652 2.97678 2.99811 3.08106 3.65053 3.81376 3.84459 4.41324 4.45741 4.54116 4.60584 4.75520 4.89536 5.06587 5.07823 5.22911 5.34963 5.39346 5.53495 5.57404 5.57624 5.64824 5.79944 5.81260 5.86601 5.93218 6.09020 6.17052 6.23880 6.30245 6.33794 6.38256 6.84552 6.91000 6.93189 7.15793 7.23184 7.48067 7.48388 7.70181 7.91997 7.98355 8.01692 8.16204 8.49664 8.62331 8.74890 8.84788 9.96987 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.002839 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.400413 B = 9860.611738 C =10278.932119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.341 3.659 3 O -0.433 6.433 4 C -0.154 4.154 5 C -0.098 4.098 6 C 0.530 3.470 7 O -0.531 6.531 8 N -0.720 5.720 9 C 0.186 3.814 10 C -0.251 4.251 11 C -0.076 4.076 12 C -0.179 4.179 13 C 0.119 3.881 14 C -0.461 4.461 15 H 0.081 0.919 16 C 0.082 3.918 17 N -0.772 5.772 18 Si 0.902 3.098 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.234 4.234 23 C -0.066 4.066 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.110 4.110 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.398 0.602 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.284 0.716 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -0.548 16.360 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.215 3.785 3 O -0.304 6.304 4 C -0.192 4.192 5 C -0.102 4.102 6 C 0.315 3.685 7 O -0.407 6.407 8 N -0.371 5.371 9 C 0.065 3.935 10 C -0.252 4.252 11 C -0.095 4.095 12 C -0.198 4.198 13 C 0.116 3.884 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.139 4.139 17 N -0.396 5.396 18 Si 0.726 3.274 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.254 4.254 23 C -0.085 4.085 24 C -0.164 4.164 25 C -0.181 4.181 26 C -0.147 4.147 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.232 0.768 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.453 0.898 16.178 16.804 hybrid contribution -0.226 -1.353 -0.594 1.494 sum -4.679 -0.455 15.584 16.278 Atomic orbital electron populations 1.22259 0.94639 1.04455 1.04656 1.24578 0.91846 0.90469 0.71599 1.90519 1.71498 1.34654 1.33746 1.22162 0.93755 0.98182 1.05089 1.21846 0.94335 0.98949 0.95031 1.19785 0.78089 0.86016 0.84622 1.90665 1.44808 1.18444 1.86829 1.46470 1.69606 1.14936 1.06077 1.19900 0.99850 0.93884 0.79908 1.18941 0.95159 1.06516 1.04629 1.20516 0.96000 0.96030 0.96925 1.21168 0.98434 1.01802 0.98439 1.17618 0.91161 0.89162 0.90461 1.19637 0.94575 1.20771 1.13959 0.90109 1.25972 0.94568 0.98404 0.94944 1.69879 1.05111 1.35208 1.29360 0.86402 0.79001 0.82345 0.79698 1.19421 1.19844 1.18155 1.20896 0.98983 1.01948 1.03542 1.20384 0.94796 0.97239 0.96050 1.23018 0.97030 0.95377 1.00950 1.22863 0.97178 0.97145 1.00901 1.22760 0.95898 1.00881 0.95198 0.90130 0.89306 0.89099 0.87516 0.87978 0.76824 0.92742 0.92487 0.89494 0.87065 0.90502 0.88979 0.89552 0.89145 0.90720 0.90032 0.91236 0.89462 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 10.33 36.01 0.37 -1.17 16 2 C 0.34 3.79 6.91 -29.03 -0.20 3.59 16 3 O -0.43 -6.80 14.83 2.42 0.04 -6.76 16 4 C -0.15 -1.42 4.99 -27.89 -0.14 -1.55 16 5 C -0.10 -1.17 0.59 -154.85 -0.09 -1.26 16 6 C 0.53 8.61 5.55 -10.98 -0.06 8.55 16 7 O -0.53 -10.86 15.54 1.97 0.03 -10.83 16 8 N -0.72 -11.49 5.55 -61.47 -0.34 -11.83 16 9 C 0.19 3.47 5.79 -5.20 -0.03 3.44 16 10 C -0.25 -5.19 5.27 -104.33 -0.55 -5.74 16 11 C -0.08 -1.68 9.67 -39.66 -0.38 -2.07 16 12 C -0.18 -4.43 8.76 -38.87 -0.34 -4.77 16 13 C 0.12 3.01 5.59 -106.82 -0.60 2.42 16 14 C -0.46 -11.68 9.01 -37.74 -0.34 -12.02 16 15 H 0.08 1.96 7.97 -52.49 -0.42 1.55 16 16 C 0.08 1.97 4.95 -17.34 -0.09 1.88 16 17 N -0.77 -19.14 11.32 55.55 0.63 -18.51 16 18 Si 0.90 17.61 29.63 -169.99 -5.04 12.58 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.23 -5.46 9.80 -38.87 -0.38 -5.84 16 23 C -0.07 -1.40 9.67 -39.66 -0.38 -1.78 16 24 C -0.13 -1.23 7.22 -25.91 -0.19 -1.42 16 25 C -0.14 -1.54 7.81 -25.91 -0.20 -1.74 16 26 C -0.11 -1.31 5.88 -25.92 -0.15 -1.46 16 27 H 0.08 0.42 8.00 -51.93 -0.42 0.01 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.11 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.40 5.68 8.47 -40.82 -0.35 5.34 16 33 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.11 2.84 6.26 -52.49 -0.33 2.51 16 37 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 38 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.09 0.66 8.04 -51.93 -0.42 0.24 16 41 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.32 7.25 -51.93 -0.38 0.94 16 45 H 0.08 0.78 8.10 -51.93 -0.42 0.35 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -30.43 375.53 -9.69 -40.12 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.92 Total: 10.51 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -3.75 Total: -20.94 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.29 Total: -30.34 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.07 Total: -17.59 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.04 Total: 12.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.43 -9.69 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565023610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.475 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds