Wall clock time and date at job start Tue Mar 31 2020 10:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20760 * 119.99903 * 2 1 4 4 C 1.50696 * 120.00192 * 179.97438 * 2 1 3 5 5 C 1.52998 * 109.47006 * 175.60770 * 4 2 1 6 6 C 1.50704 * 112.84826 * 294.01381 * 5 4 2 7 7 O 1.21286 * 119.99989 * 113.73689 * 6 5 4 8 8 N 1.34777 * 120.00181 * 293.74032 * 6 5 4 9 9 C 1.46498 * 120.00169 * 174.81177 * 8 6 5 10 10 C 1.50696 * 109.47383 * 179.97438 * 9 8 6 11 11 C 1.38635 * 119.75322 * 269.73277 * 10 9 8 12 12 C 1.37623 * 120.24904 * 179.72004 * 11 10 9 13 13 C 1.40714 * 119.74058 * 0.56669 * 12 11 10 14 14 C 1.41403 * 120.23951 * 179.68311 * 13 12 11 15 15 H 1.07999 * 120.00148 * 159.08258 * 14 13 12 16 16 C 1.39946 * 119.99863 * 339.07747 * 14 13 12 17 17 N 1.30816 * 120.00368 * 333.02746 * 16 14 13 18 18 Si 1.86798 * 119.99759 * 153.02300 * 16 14 13 19 19 H 1.48500 * 109.47135 * 94.98476 * 18 16 14 20 20 H 1.48496 * 109.47265 * 214.98752 * 18 16 14 21 21 H 1.48503 * 109.47295 * 334.98711 * 18 16 14 22 22 C 1.40714 * 119.51647 * 359.70689 * 13 12 11 23 23 C 1.37615 * 119.74277 * 359.97438 * 22 13 12 24 24 C 1.53786 * 113.61336 * 162.71374 * 5 4 2 25 25 C 1.53783 * 87.07970 * 220.01379 * 24 5 4 26 26 C 1.53777 * 113.61897 * 65.21183 * 5 4 2 27 27 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47347 * 300.00410 * 1 2 3 29 29 H 1.09005 * 109.47127 * 60.00312 * 1 2 3 30 30 H 1.09006 * 109.46954 * 295.60500 * 4 2 1 31 31 H 1.08999 * 109.47296 * 55.60036 * 4 2 1 32 32 H 0.97000 * 119.99557 * 354.81262 * 8 6 5 33 33 H 1.09000 * 109.47263 * 300.00119 * 9 8 6 34 34 H 1.09002 * 109.47128 * 60.00180 * 9 8 6 35 35 H 1.08000 * 119.87182 * 359.97438 * 11 10 9 36 36 H 1.08001 * 120.12639 * 180.27643 * 12 11 10 37 37 H 0.97000 * 120.00567 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.12561 * 179.97438 * 22 13 12 39 39 H 1.08002 * 119.87248 * 180.02562 * 23 22 13 40 40 H 1.08996 * 113.61393 * 334.56159 * 24 5 4 41 41 H 1.09004 * 113.61459 * 105.46830 * 24 5 4 42 42 H 1.09004 * 113.61494 * 270.88601 * 25 24 5 43 43 H 1.08999 * 113.61786 * 139.97942 * 25 24 5 44 44 H 1.09002 * 113.61472 * 254.53037 * 26 5 4 45 45 H 1.08997 * 113.61079 * 25.43328 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 6 3.7611 -1.0276 -0.1100 6 6 4.1471 -0.4152 -1.4318 7 8 4.5714 0.7203 -1.4733 8 7 4.0207 -1.1292 -2.5679 9 6 4.2872 -0.4985 -3.8630 10 6 4.0761 -1.5047 -4.9648 11 6 5.1365 -2.2881 -5.3935 12 6 4.9538 -3.2142 -6.3950 13 6 3.6876 -3.3559 -6.9922 14 6 3.4897 -4.2995 -8.0266 15 1 2.4945 -4.6533 -8.2517 16 6 4.5836 -4.7748 -8.7588 17 7 5.6539 -4.0343 -8.8908 18 14 4.5153 -6.4667 -9.5475 19 1 4.0773 -6.3369 -10.9605 20 1 5.8629 -7.0888 -9.5022 21 1 3.5513 -7.3196 -8.8069 22 6 2.6199 -2.5515 -6.5529 23 6 2.8241 -1.6365 -5.5454 24 6 4.6401 -2.2217 0.2979 25 6 5.5691 -1.2039 0.9804 26 6 4.3417 -0.2858 1.1055 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.0576 -1.8414 0.9276 31 1 1.9395 -1.9104 -0.8471 32 1 3.7533 -2.0608 -2.5279 33 1 3.6086 0.3428 -4.0039 34 1 5.3172 -0.1428 -3.8888 35 1 6.1086 -2.1739 -4.9371 36 1 5.7802 -3.8266 -6.7244 37 1 6.4119 -4.3636 -9.3986 38 1 1.6442 -2.6517 -7.0047 39 1 2.0060 -1.0183 -5.2064 40 1 4.1534 -2.9043 0.9945 41 1 5.0998 -2.7343 -0.5472 42 1 6.3437 -0.8099 0.3224 43 1 5.9597 -1.5438 1.9395 44 1 4.5605 0.7645 0.9124 45 1 3.7734 -0.4392 2.0228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565023610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:36 Heat of formation + Delta-G solvation = -66.597332 kcal Electronic energy + Delta-G solvation = -25902.581043 eV Core-core repulsion = 22270.084924 eV Total energy + Delta-G solvation = -3632.496119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96979 -40.01472 -39.48606 -38.30382 -36.31138 -35.10623 -32.61372 -32.04704 -31.19574 -30.11202 -28.65856 -26.55620 -25.92913 -24.65795 -22.92724 -22.54881 -21.83254 -20.56027 -20.03789 -19.25830 -17.77059 -17.25588 -17.02972 -16.86505 -16.44837 -16.26580 -15.93018 -15.88019 -15.65138 -15.34444 -15.11848 -14.66286 -14.28949 -14.07077 -13.85281 -13.57706 -13.50432 -13.32388 -13.27261 -13.15144 -12.97437 -12.83507 -12.74946 -12.54178 -12.40509 -12.17246 -11.86317 -11.51392 -11.48524 -11.32593 -11.22501 -10.97998 -10.71391 -10.37745 -10.01795 -9.42031 -9.34466 -8.76372 -6.34645 0.84554 1.12311 1.12523 1.38564 1.45971 1.55692 1.69149 2.18442 2.31123 2.71610 3.07932 3.54332 3.66106 3.71994 3.77185 3.88413 3.99636 4.18436 4.27003 4.36709 4.42070 4.50295 4.53816 4.61991 4.72781 4.74352 4.77604 4.81223 4.86718 4.90283 5.02703 5.03880 5.13002 5.17790 5.21372 5.26302 5.31975 5.40472 5.48190 5.52148 5.66400 5.90633 6.06333 6.19646 6.33819 6.65137 6.68136 6.70491 6.89417 6.99900 7.34307 8.21983 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.002839 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.400413 B = 9860.611738 C =10278.932119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.337 3.663 3 O -0.491 6.491 4 C -0.153 4.153 5 C -0.102 4.102 6 C 0.527 3.473 7 O -0.580 6.580 8 N -0.712 5.712 9 C 0.196 3.804 10 C -0.235 4.235 11 C -0.077 4.077 12 C -0.200 4.200 13 C 0.091 3.909 14 C -0.498 4.498 15 H 0.080 0.920 16 C 0.043 3.957 17 N -0.808 5.808 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.255 1.255 22 C -0.246 4.246 23 C -0.062 4.062 24 C -0.110 4.110 25 C -0.146 4.146 26 C -0.110 4.110 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.118 0.882 32 H 0.409 0.591 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.292 0.708 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 -2.758 18.145 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.214 3.786 3 O -0.367 6.367 4 C -0.190 4.190 5 C -0.105 4.105 6 C 0.314 3.686 7 O -0.460 6.460 8 N -0.363 5.363 9 C 0.073 3.927 10 C -0.236 4.236 11 C -0.096 4.096 12 C -0.220 4.220 13 C 0.088 3.912 14 C -0.526 4.526 15 H 0.098 0.902 16 C -0.175 4.175 17 N -0.432 5.432 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.179 1.179 22 C -0.266 4.266 23 C -0.081 4.081 24 C -0.147 4.147 25 C -0.183 4.183 26 C -0.147 4.147 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.170 0.830 31 H 0.136 0.864 32 H 0.245 0.755 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.149 0.851 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.062 0.938 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.993 -1.344 17.974 18.994 hybrid contribution 0.244 -0.513 -1.063 1.205 sum -5.749 -1.856 16.911 17.958 Atomic orbital electron populations 1.22283 0.92006 1.06584 1.04740 1.25326 0.93555 0.90366 0.69314 1.90530 1.72826 1.36642 1.36671 1.22328 0.90992 0.97673 1.08028 1.21844 0.96888 0.99820 0.91954 1.20617 0.76640 0.85358 0.85987 1.90645 1.46884 1.20785 1.87640 1.46244 1.69505 1.15402 1.05185 1.19620 0.99169 0.93200 0.80662 1.19089 0.94590 1.05582 1.04388 1.20676 0.97082 0.95541 0.96309 1.21116 0.98077 1.03002 0.99776 1.17947 0.91994 0.90043 0.91205 1.19891 0.95276 1.22331 1.15113 0.90167 1.26805 0.93767 1.01818 0.95079 1.69911 1.05972 1.36983 1.30324 0.85281 0.79195 0.77104 0.78739 1.18680 1.19030 1.17884 1.21083 0.98948 1.02268 1.04269 1.20625 0.95674 0.96663 0.95109 1.23069 0.95792 0.94657 1.01205 1.22851 0.96424 0.97318 1.01745 1.22781 0.97047 0.98504 0.96406 0.86987 0.88254 0.89870 0.83014 0.86389 0.75481 0.93182 0.93575 0.88232 0.88699 0.89731 0.88251 0.86895 0.85063 0.91396 0.93016 0.88719 0.93756 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.46 10.33 71.24 0.74 -1.73 16 2 C 0.34 6.80 6.91 29.10 0.20 7.00 16 3 O -0.49 -15.50 14.83 1.97 0.03 -15.47 16 4 C -0.15 -2.23 4.99 29.85 0.15 -2.08 16 5 C -0.10 -2.22 0.59 -52.40 -0.03 -2.25 16 6 C 0.53 16.97 5.55 87.66 0.49 17.45 16 7 O -0.58 -24.58 15.54 0.38 0.01 -24.58 16 8 N -0.71 -22.02 5.55 -466.78 -2.59 -24.61 16 9 C 0.20 7.24 5.79 85.63 0.50 7.74 16 10 C -0.23 -9.57 5.27 -19.67 -0.10 -9.67 16 11 C -0.08 -3.44 9.67 22.22 0.21 -3.23 16 12 C -0.20 -10.12 8.76 22.73 0.20 -9.92 16 13 C 0.09 4.69 5.59 -21.29 -0.12 4.57 16 14 C -0.50 -25.74 9.01 23.46 0.21 -25.53 16 15 H 0.08 3.98 7.97 -2.91 -0.02 3.96 16 16 C 0.04 2.10 4.95 85.26 0.42 2.52 16 17 N -0.81 -40.90 11.32 21.83 0.25 -40.65 16 18 Si 0.98 36.14 29.63 68.60 2.03 38.17 16 19 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.27 -9.40 7.11 99.48 0.71 -8.70 16 21 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 22 C -0.25 -11.46 9.80 22.73 0.22 -11.24 16 23 C -0.06 -2.56 9.67 22.22 0.21 -2.35 16 24 C -0.11 -1.77 7.22 31.12 0.22 -1.54 16 25 C -0.15 -2.90 7.81 31.12 0.24 -2.66 16 26 C -0.11 -2.48 5.88 31.12 0.18 -2.30 16 27 H 0.11 0.67 8.00 -2.39 -0.02 0.65 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.15 0.90 8.06 -2.38 -0.02 0.88 16 31 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 10.86 8.47 -92.71 -0.79 10.08 16 33 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 34 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 35 H 0.10 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.09 5.03 6.26 -2.91 -0.02 5.01 16 37 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 38 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.13 1.12 8.04 -2.39 -0.02 1.10 16 41 H 0.07 1.22 8.10 -2.38 -0.02 1.20 16 42 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.04 1.40 7.25 -2.39 -0.02 1.38 16 45 H 0.11 1.79 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -71.18 375.53 3.88 -67.30 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.21 Total: 35.04 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 3.95 Total: -35.20 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -2.34 Total: -65.26 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: 0.04 Total: -40.05 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Total: -71.18 3.88 -67.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565023610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.701 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds