Wall clock time and date at job start Tue Mar 31 2020 12:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00078 * 2 1 4 4 H 1.48495 * 109.46981 * 270.00404 * 3 2 1 5 5 H 1.48507 * 109.46746 * 29.99519 * 3 2 1 6 6 H 1.48492 * 109.47377 * 149.99691 * 3 2 1 7 7 C 1.37881 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99518 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00018 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46846 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47021 * 304.99664 * 10 9 7 12 12 N 1.46495 * 109.47279 * 65.00048 * 10 9 7 13 13 C 1.34782 * 119.99896 * 205.00103 * 12 10 9 14 14 O 1.21583 * 120.00135 * 359.97438 * 13 12 10 15 15 N 1.34776 * 119.99750 * 179.97438 * 13 12 10 16 16 C 1.46503 * 119.99676 * 179.97438 * 15 13 12 17 17 H 1.09002 * 115.51852 * 350.58265 * 16 15 13 18 18 C 1.53005 * 117.44267 * 205.16085 * 16 15 13 19 19 H 1.08994 * 119.52365 * 5.69243 * 18 16 15 20 20 C 1.54383 * 118.12558 * 160.72762 * 18 16 15 21 21 N 1.48555 * 104.59089 * 87.23403 * 20 18 16 22 22 C 1.48565 * 104.22453 * 320.51314 * 21 20 18 23 23 C 1.53005 * 117.40617 * 135.94775 * 16 15 13 24 24 H 1.08990 * 119.52576 * 355.92150 * 23 16 15 25 25 C 1.50703 * 109.46754 * 185.00059 * 10 9 7 26 26 C 1.38231 * 119.99873 * 279.72129 * 25 10 9 27 27 C 1.38241 * 119.99926 * 179.74399 * 26 25 10 28 28 C 1.38234 * 119.99805 * 0.53627 * 27 26 25 29 29 C 1.38239 * 119.99874 * 359.73866 * 28 27 26 30 30 C 1.38231 * 120.00051 * 359.97438 * 29 28 27 31 31 H 0.96999 * 120.00352 * 359.97438 * 1 2 3 32 32 H 1.08991 * 109.47365 * 60.00261 * 9 7 2 33 33 H 1.09003 * 109.47066 * 299.99723 * 9 7 2 34 34 H 0.96998 * 120.00092 * 24.99853 * 12 10 9 35 35 H 0.96998 * 120.00238 * 359.97438 * 15 13 12 36 36 H 1.09002 * 110.40700 * 206.00641 * 20 18 16 37 37 H 1.09001 * 110.41338 * 328.33559 * 20 18 16 38 38 H 1.00900 * 111.00607 * 80.07022 * 21 20 18 39 39 H 1.08993 * 110.41262 * 158.26747 * 22 21 20 40 40 H 1.09002 * 110.40827 * 280.70580 * 22 21 20 41 41 H 1.07999 * 120.00159 * 0.02562 * 26 25 10 42 42 H 1.07991 * 120.00099 * 180.29578 * 27 26 25 43 43 H 1.08001 * 120.00344 * 179.76529 * 28 27 26 44 44 H 1.07998 * 119.99818 * 179.97438 * 29 28 27 45 45 H 1.08007 * 119.99900 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 1 2.9301 -3.5556 -0.8395 12 7 3.0054 -3.6534 1.2542 13 6 4.2302 -4.2139 1.3031 14 8 4.7040 -4.7273 0.3080 15 7 4.9296 -4.2055 2.4551 16 6 6.2606 -4.8153 2.5084 17 1 6.5485 -5.3918 1.6293 18 6 6.7557 -5.3096 3.8691 19 1 6.0841 -5.2833 4.7271 20 6 7.9095 -6.3351 3.8951 21 7 9.1444 -5.5097 3.8751 22 6 8.8305 -4.4059 2.9316 23 6 7.3617 -4.0405 3.2353 24 1 7.1495 -3.0457 3.6269 25 6 1.4961 -4.9637 -0.1220 26 6 0.8985 -5.5257 0.9905 27 6 0.2066 -6.7170 0.8759 28 6 0.1218 -7.3519 -0.3491 29 6 0.7243 -6.7927 -1.4606 30 6 1.4111 -5.5984 -1.3471 31 1 -0.4850 0.8400 0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 2.6273 -3.2441 2.0481 35 1 4.5517 -3.7956 3.2489 36 1 7.8664 -6.9328 4.8056 37 1 7.8660 -6.9787 3.0164 38 1 9.3544 -5.1507 4.7945 39 1 9.4810 -3.5511 3.1166 40 1 8.9324 -4.7462 1.9011 41 1 0.9682 -5.0318 1.9484 42 1 -0.2643 -7.1537 1.7441 43 1 -0.4155 -8.2845 -0.4380 44 1 0.6584 -7.2889 -2.4175 45 1 1.8821 -5.1618 -2.2154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572499641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:04 Heat of formation + Delta-G solvation = 27.059008 kcal Electronic energy + Delta-G solvation = -25821.163316 eV Core-core repulsion = 22225.021192 eV Total energy + Delta-G solvation = -3596.142124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.36725 -39.45774 -38.42553 -35.35955 -34.36629 -32.77382 -31.79933 -30.56373 -30.25518 -28.70214 -28.59136 -25.00275 -23.52176 -22.28410 -21.95796 -21.42598 -20.77070 -20.24461 -19.79291 -18.00853 -17.30309 -16.73870 -16.16491 -15.82917 -15.09953 -14.88479 -14.68018 -14.49770 -14.38200 -14.03644 -14.00438 -13.39946 -13.03215 -12.95238 -12.82302 -12.52774 -12.37339 -12.11000 -12.01660 -11.73958 -11.54812 -11.12955 -10.99706 -10.90595 -10.73393 -10.60720 -10.46017 -10.11056 -9.79812 -9.77570 -9.31051 -9.08600 -8.78316 -8.52418 -8.46751 -8.31296 -8.16277 -6.10555 -4.13833 1.79547 1.82329 2.90050 3.25754 3.26534 3.32978 3.35884 3.78746 4.02733 4.20222 4.37754 4.41723 4.56822 4.69143 4.84821 4.89900 4.99261 5.26118 5.27869 5.28991 5.33398 5.38832 5.44049 5.55872 5.63377 5.72100 5.82628 5.91917 5.92735 5.95773 6.16538 6.30356 6.36982 6.43685 6.57750 6.65334 6.86096 6.87179 6.93569 7.01952 7.09984 7.26822 7.42479 7.50099 7.66034 7.86536 8.24598 8.44986 8.92241 9.03075 9.51177 10.99971 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008354 B = 0.004425 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.692468 B = 6325.847036 C = 9106.415896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.202 3.798 11 H 0.087 0.913 12 N -0.714 5.714 13 C 0.708 3.292 14 O -0.593 6.593 15 N -0.724 5.724 16 C 0.154 3.846 17 H 0.136 0.864 18 C -0.213 4.213 19 H 0.113 0.887 20 C 0.070 3.930 21 N -0.665 5.665 22 C 0.070 3.930 23 C -0.212 4.212 24 H 0.114 0.886 25 C -0.071 4.071 26 C -0.107 4.107 27 C -0.126 4.126 28 C -0.135 4.135 29 C -0.123 4.123 30 C -0.107 4.107 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.024 0.976 34 H 0.397 0.603 35 H 0.396 0.604 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.337 0.663 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -11.980 8.373 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.097 3.903 11 H 0.105 0.895 12 N -0.366 5.366 13 C 0.408 3.592 14 O -0.472 6.472 15 N -0.376 5.376 16 C 0.045 3.955 17 H 0.154 0.846 18 C -0.235 4.235 19 H 0.131 0.869 20 C -0.060 4.060 21 N -0.291 5.291 22 C -0.060 4.060 23 C -0.234 4.234 24 H 0.132 0.868 25 C -0.072 4.072 26 C -0.125 4.125 27 C -0.144 4.144 28 C -0.153 4.153 29 C -0.141 4.141 30 C -0.126 4.126 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.231 0.769 35 H 0.229 0.771 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.152 0.848 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.592 -12.749 6.965 17.408 hybrid contribution -0.800 2.108 1.468 2.691 sum 8.792 -10.641 8.433 16.175 Atomic orbital electron populations 1.69958 1.06002 1.26794 1.50349 1.24986 0.94787 0.99201 0.95161 0.86596 0.79739 0.83419 0.78261 1.20579 1.21279 1.19984 1.21140 0.93096 0.90374 1.51148 0.92387 1.19399 0.93205 0.90164 0.98595 1.20139 0.92924 0.91752 0.85448 0.89495 1.45135 1.15994 1.60690 1.14770 1.15914 0.81119 0.79222 0.82937 1.90875 1.70571 1.51579 1.34136 1.44459 1.17376 1.63403 1.12406 1.21381 0.81436 0.96897 0.95739 0.84632 1.24767 1.02606 0.97250 0.98852 0.86853 1.22564 0.85494 0.95065 1.02894 1.63534 1.33289 1.19123 1.13126 1.22563 0.91683 0.93545 0.98234 1.24865 0.94909 0.96739 1.06857 0.86814 1.20588 0.96710 0.96623 0.93301 1.20880 0.97607 0.95599 0.98431 1.21030 0.99943 0.96074 0.97339 1.20988 1.01106 1.00007 0.93245 1.21040 0.98581 0.96202 0.98273 1.21020 0.99051 0.95054 0.97476 0.92872 0.94617 0.95768 0.76933 0.77087 0.90307 0.89717 0.84816 0.90239 0.89617 0.86724 0.86830 0.86879 0.86614 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.69 8.84 -34.44 -0.30 -13.99 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 10 C 0.20 4.13 2.12 -69.08 -0.15 3.98 16 11 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 12 N -0.71 -12.86 4.02 -59.81 -0.24 -13.10 16 13 C 0.71 12.78 8.52 -86.91 -0.74 12.04 16 14 O -0.59 -12.86 15.57 5.29 0.08 -12.78 16 15 N -0.72 -9.97 5.57 -58.67 -0.33 -10.30 16 16 C 0.15 1.92 5.98 -67.92 -0.41 1.52 16 17 H 0.14 1.96 7.40 -51.93 -0.38 1.58 16 18 C -0.21 -2.03 7.05 -89.23 -0.63 -2.65 16 19 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 20 C 0.07 0.60 7.27 -2.18 -0.02 0.59 16 21 N -0.67 -5.85 7.62 -109.66 -0.84 -6.69 16 22 C 0.07 0.65 7.27 -2.18 -0.02 0.64 16 23 C -0.21 -2.17 7.05 -89.23 -0.63 -2.80 16 24 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 25 C -0.07 -1.32 4.91 -104.62 -0.51 -1.84 16 26 C -0.11 -1.81 9.33 -39.58 -0.37 -2.18 16 27 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 28 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 29 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 30 C -0.11 -1.89 9.67 -39.59 -0.38 -2.28 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.40 6.48 8.62 -40.82 -0.35 6.13 16 35 H 0.40 4.46 8.84 -40.82 -0.36 4.10 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.34 2.45 8.92 -39.29 -0.35 2.10 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.11 1.81 7.71 -52.49 -0.40 1.41 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -31.48 377.35 -12.34 -43.82 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -6.85 Total: 14.02 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -5.57 Total: -11.89 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.67 Total: -54.81 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.48 -12.34 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572499641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.878 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds