Wall clock time and date at job start Tue Mar 31 2020 12:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00078 * 2 1 4 4 H 1.48495 * 109.46981 * 270.00404 * 3 2 1 5 5 H 1.48507 * 109.46746 * 29.99519 * 3 2 1 6 6 H 1.48492 * 109.47377 * 149.99691 * 3 2 1 7 7 C 1.37881 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99518 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00018 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46846 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47021 * 304.99664 * 10 9 7 12 12 N 1.46495 * 109.47279 * 65.00048 * 10 9 7 13 13 C 1.34782 * 119.99896 * 205.00103 * 12 10 9 14 14 O 1.21583 * 120.00135 * 359.97438 * 13 12 10 15 15 N 1.34776 * 119.99750 * 179.97438 * 13 12 10 16 16 C 1.46503 * 119.99676 * 179.97438 * 15 13 12 17 17 H 1.09002 * 115.51852 * 350.58265 * 16 15 13 18 18 C 1.53005 * 117.44267 * 205.16085 * 16 15 13 19 19 H 1.08994 * 119.52365 * 5.69243 * 18 16 15 20 20 C 1.54383 * 118.12558 * 160.72762 * 18 16 15 21 21 N 1.48555 * 104.59089 * 87.23403 * 20 18 16 22 22 C 1.48565 * 104.22453 * 320.51314 * 21 20 18 23 23 C 1.53005 * 117.40617 * 135.94775 * 16 15 13 24 24 H 1.08990 * 119.52576 * 355.92150 * 23 16 15 25 25 C 1.50703 * 109.46754 * 185.00059 * 10 9 7 26 26 C 1.38231 * 119.99873 * 279.72129 * 25 10 9 27 27 C 1.38241 * 119.99926 * 179.74399 * 26 25 10 28 28 C 1.38234 * 119.99805 * 0.53627 * 27 26 25 29 29 C 1.38239 * 119.99874 * 359.73866 * 28 27 26 30 30 C 1.38231 * 120.00051 * 359.97438 * 29 28 27 31 31 H 0.96999 * 120.00352 * 359.97438 * 1 2 3 32 32 H 1.08991 * 109.47365 * 60.00261 * 9 7 2 33 33 H 1.09003 * 109.47066 * 299.99723 * 9 7 2 34 34 H 0.96998 * 120.00092 * 24.99853 * 12 10 9 35 35 H 0.96998 * 120.00238 * 359.97438 * 15 13 12 36 36 H 1.09002 * 110.40700 * 206.00641 * 20 18 16 37 37 H 1.09001 * 110.41338 * 328.33559 * 20 18 16 38 38 H 1.00900 * 111.00607 * 80.07022 * 21 20 18 39 39 H 1.08993 * 110.41262 * 158.26747 * 22 21 20 40 40 H 1.09002 * 110.40827 * 280.70580 * 22 21 20 41 41 H 1.07999 * 120.00159 * 0.02562 * 26 25 10 42 42 H 1.07991 * 120.00099 * 180.29578 * 27 26 25 43 43 H 1.08001 * 120.00344 * 179.76529 * 28 27 26 44 44 H 1.07998 * 119.99818 * 179.97438 * 29 28 27 45 45 H 1.08007 * 119.99900 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 1 2.9301 -3.5556 -0.8395 12 7 3.0054 -3.6534 1.2542 13 6 4.2302 -4.2139 1.3031 14 8 4.7040 -4.7273 0.3080 15 7 4.9296 -4.2055 2.4551 16 6 6.2606 -4.8153 2.5084 17 1 6.5485 -5.3918 1.6293 18 6 6.7557 -5.3096 3.8691 19 1 6.0841 -5.2833 4.7271 20 6 7.9095 -6.3351 3.8951 21 7 9.1444 -5.5097 3.8751 22 6 8.8305 -4.4059 2.9316 23 6 7.3617 -4.0405 3.2353 24 1 7.1495 -3.0457 3.6269 25 6 1.4961 -4.9637 -0.1220 26 6 0.8985 -5.5257 0.9905 27 6 0.2066 -6.7170 0.8759 28 6 0.1218 -7.3519 -0.3491 29 6 0.7243 -6.7927 -1.4606 30 6 1.4111 -5.5984 -1.3471 31 1 -0.4850 0.8400 0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 2.6273 -3.2441 2.0481 35 1 4.5517 -3.7956 3.2489 36 1 7.8664 -6.9328 4.8056 37 1 7.8660 -6.9787 3.0164 38 1 9.3544 -5.1507 4.7945 39 1 9.4810 -3.5511 3.1166 40 1 8.9324 -4.7462 1.9011 41 1 0.9682 -5.0318 1.9484 42 1 -0.2643 -7.1537 1.7441 43 1 -0.4155 -8.2845 -0.4380 44 1 0.6584 -7.2889 -2.4175 45 1 1.8821 -5.1618 -2.2154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572499641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:03 Heat of formation + Delta-G solvation = 5.862038 kcal Electronic energy + Delta-G solvation = -25822.082486 eV Core-core repulsion = 22225.021192 eV Total energy + Delta-G solvation = -3597.061293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50473 -40.62891 -39.69273 -36.88631 -35.57180 -34.73511 -33.04028 -31.78424 -31.46782 -30.47451 -29.33267 -26.75669 -24.52196 -23.78916 -23.36519 -22.42519 -22.04241 -21.27428 -21.02772 -19.38542 -18.64797 -18.17698 -17.61640 -17.02208 -16.55791 -16.39289 -16.07500 -15.79645 -15.49195 -15.33272 -14.86237 -14.75075 -14.49550 -14.18499 -14.15168 -13.89283 -13.66790 -13.43809 -13.22734 -12.92252 -12.75549 -12.65881 -12.51657 -12.46580 -12.15525 -11.90637 -11.84994 -11.59424 -11.36048 -11.32928 -10.97153 -10.60039 -10.15938 -9.81731 -9.75406 -9.60521 -9.49207 -8.21132 -6.31143 0.51607 0.56762 1.38003 1.40088 1.49684 1.64743 2.06344 2.38894 2.69628 2.94472 3.11497 3.25005 3.33218 3.64415 3.74796 4.00250 4.04174 4.06434 4.08487 4.20668 4.21607 4.32619 4.42213 4.58533 4.61629 4.65584 4.76085 4.79054 4.87373 4.93692 4.99906 5.13188 5.14850 5.20560 5.27791 5.42397 5.52587 5.58093 5.61660 5.61849 5.64770 5.77318 5.86455 6.07838 6.16349 6.21088 6.42165 6.81313 7.11502 7.37797 7.61513 8.89567 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008354 B = 0.004425 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.692468 B = 6325.847036 C = 9106.415896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.039 3.961 10 C 0.219 3.781 11 H 0.056 0.944 12 N -0.710 5.710 13 C 0.706 3.294 14 O -0.635 6.635 15 N -0.707 5.707 16 C 0.120 3.880 17 H 0.109 0.891 18 C -0.185 4.185 19 H 0.131 0.869 20 C 0.069 3.931 21 N -0.667 5.667 22 C 0.070 3.930 23 C -0.203 4.203 24 H 0.120 0.880 25 C -0.097 4.097 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.130 4.130 29 C -0.124 4.124 30 C -0.134 4.134 31 H 0.264 0.736 32 H 0.005 0.995 33 H 0.013 0.987 34 H 0.405 0.595 35 H 0.410 0.590 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.349 0.651 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 -12.990 10.444 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.001 3.999 10 C 0.113 3.887 11 H 0.074 0.926 12 N -0.362 5.362 13 C 0.406 3.594 14 O -0.516 6.516 15 N -0.360 5.360 16 C 0.012 3.988 17 H 0.127 0.873 18 C -0.206 4.206 19 H 0.149 0.851 20 C -0.061 4.061 21 N -0.294 5.294 22 C -0.060 4.060 23 C -0.225 4.225 24 H 0.138 0.862 25 C -0.099 4.099 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.147 4.147 29 C -0.142 4.142 30 C -0.152 4.152 31 H 0.073 0.927 32 H 0.024 0.976 33 H 0.031 0.969 34 H 0.240 0.760 35 H 0.246 0.754 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.166 0.834 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.164 0.836 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.121 -13.756 9.097 19.350 hybrid contribution -0.940 2.333 0.811 2.643 sum 9.180 -11.423 9.908 17.690 Atomic orbital electron populations 1.70066 1.07420 1.27737 1.51300 1.25759 0.95557 1.02572 0.94780 0.85585 0.78689 0.79332 0.78230 1.20464 1.20520 1.19250 1.21382 0.92909 0.91621 1.50746 0.93026 1.19131 0.93224 0.91034 0.96486 1.19590 0.91683 0.91912 0.85481 0.92620 1.44911 1.16160 1.60968 1.14183 1.16017 0.80959 0.78865 0.83539 1.90841 1.71398 1.53357 1.36017 1.44242 1.17522 1.62807 1.11434 1.21434 0.81433 0.99047 0.96839 0.87328 1.24818 1.01963 0.96929 0.96921 0.85121 1.22624 0.84974 0.94917 1.03569 1.63479 1.33171 1.18896 1.13806 1.22561 0.91402 0.94283 0.97783 1.24886 0.94670 0.97340 1.05616 0.86239 1.20476 0.98296 0.96377 0.94734 1.21045 0.98095 0.96712 0.97989 1.21433 0.98892 0.95034 0.98939 1.21467 0.99962 1.00912 0.92401 1.21386 0.97524 0.95114 1.00151 1.21181 1.00417 0.96617 0.97004 0.92696 0.97637 0.96850 0.75990 0.75396 0.88001 0.90864 0.83443 0.88703 0.91086 0.86222 0.83622 0.83102 0.83862 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.86 13.29 21.45 0.28 -53.57 16 2 C 0.01 0.66 5.46 84.66 0.46 1.13 16 3 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.53 -28.78 8.84 25.60 0.23 -28.55 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.04 1.95 4.50 29.85 0.13 2.09 16 10 C 0.22 9.50 2.12 44.25 0.09 9.59 16 11 H 0.06 2.73 7.44 -2.39 -0.02 2.71 16 12 N -0.71 -26.59 4.02 -461.41 -1.86 -28.45 16 13 C 0.71 26.41 8.52 179.05 1.53 27.93 16 14 O -0.63 -29.01 15.57 -3.98 -0.06 -29.07 16 15 N -0.71 -19.50 5.57 -457.79 -2.55 -22.05 16 16 C 0.12 3.00 5.98 44.99 0.27 3.26 16 17 H 0.11 3.32 7.40 -2.39 -0.02 3.31 16 18 C -0.18 -3.15 7.05 -9.89 -0.07 -3.22 16 19 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 20 C 0.07 1.06 7.27 86.45 0.63 1.69 16 21 N -0.67 -10.35 7.62 -500.86 -3.82 -14.17 16 22 C 0.07 1.22 7.27 86.45 0.63 1.85 16 23 C -0.20 -3.90 7.05 -9.90 -0.07 -3.97 16 24 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 25 C -0.10 -3.79 4.91 -19.87 -0.10 -3.89 16 26 C -0.12 -4.06 9.33 22.27 0.21 -3.85 16 27 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 28 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 29 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 30 C -0.13 -4.88 9.67 22.27 0.22 -4.66 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.40 13.58 8.62 -92.71 -0.80 12.78 16 35 H 0.41 8.85 8.84 -92.71 -0.82 8.03 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.35 4.09 8.92 -89.69 -0.80 3.29 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.12 3.78 7.71 -2.91 -0.02 3.76 16 42 H 0.15 3.07 8.06 -2.92 -0.02 3.04 16 43 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 45 H 0.11 4.10 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -70.53 377.35 -2.55 -73.08 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -1.40 Total: 39.22 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.83 Total: -10.43 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -7.94 Total: -118.24 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.06 Total: -29.07 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -70.53 -2.55 -73.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572499641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.939 kcal (2) G-P(sol) polarization free energy of solvation -70.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds