Wall clock time and date at job start Tue Mar 31 2020 12:16:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30888 * 1
3 3 Si 1.86799 * 120.00510 * 2 1
4 4 H 1.48496 * 109.46881 * 270.00354 * 3 2 1
5 5 H 1.48505 * 109.46697 * 29.99818 * 3 2 1
6 6 H 1.48494 * 109.46974 * 149.99738 * 3 2 1
7 7 C 1.39899 * 119.99354 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99541 * 175.56420 * 7 2 1
9 9 C 1.41158 * 120.00200 * 355.55369 * 7 2 1
10 10 C 1.40868 * 120.16232 * 214.78285 * 9 7 2
11 11 C 1.36380 * 119.82398 * 180.02562 * 10 9 7
12 12 C 1.39481 * 120.16938 * 0.02769 * 11 10 9
13 13 N 1.39240 * 119.83153 * 179.97438 * 12 11 10
14 14 C 1.34781 * 119.99876 * 35.29522 * 13 12 11
15 15 O 1.21575 * 120.00373 * 355.70314 * 14 13 12
16 16 N 1.34774 * 119.99701 * 175.71297 * 14 13 12
17 17 C 1.46499 * 119.99996 * 179.97438 * 16 14 13
18 18 C 1.52997 * 109.47511 * 179.97438 * 17 16 14
19 19 C 1.50703 * 109.47557 * 179.97438 * 18 17 16
20 20 C 1.29824 * 118.54979 * 95.02405 * 19 18 17
21 21 C 1.50140 * 123.28090 * 180.37496 * 20 19 18
22 22 N 1.46758 * 110.42557 * 343.08515 * 21 20 19
23 23 C 1.47250 * 110.25520 * 50.58684 * 22 21 20
24 24 C 1.50302 * 118.55637 * 275.00577 * 19 18 17
25 25 C 1.39480 * 120.33217 * 0.24413 * 12 11 10
26 26 C 1.36376 * 120.16925 * 359.44898 * 25 12 11
27 27 H 0.97005 * 119.99212 * 359.97438 * 1 2 3
28 28 H 1.07993 * 120.08823 * 0.02562 * 10 9 7
29 29 H 1.07997 * 119.90848 * 180.02562 * 11 10 9
30 30 H 0.97003 * 120.00048 * 215.29601 * 13 12 11
31 31 H 0.96999 * 120.00172 * 359.97438 * 16 14 13
32 32 H 1.08996 * 109.47386 * 59.99649 * 17 16 14
33 33 H 1.09000 * 109.47272 * 299.99726 * 17 16 14
34 34 H 1.09007 * 109.47158 * 59.99859 * 18 17 16
35 35 H 1.08997 * 109.47652 * 300.00618 * 18 17 16
36 36 H 1.07998 * 118.35639 * 0.39764 * 20 19 18
37 37 H 1.09006 * 109.33571 * 103.19844 * 21 20 19
38 38 H 1.09003 * 109.33298 * 222.86241 * 21 20 19
39 39 H 1.00895 * 110.79918 * 287.30721 * 22 21 20
40 40 H 1.08995 * 109.63646 * 171.72343 * 23 22 21
41 41 H 1.08998 * 109.63313 * 51.31569 * 23 22 21
42 42 H 1.08998 * 109.42994 * 43.41835 * 24 19 18
43 43 H 1.09002 * 109.43025 * 283.57649 * 24 19 18
44 44 H 1.08006 * 119.91239 * 179.70379 * 25 12 11
45 45 H 1.08002 * 120.08464 * 180.24489 * 26 25 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3089 0.0000 0.0000
3 14 2.2430 1.6176 0.0000
4 1 2.4904 2.0463 -1.4001
5 1 1.4404 2.6526 0.7000
6 1 3.5405 1.4399 0.7001
7 6 2.0082 -1.2116 -0.0005
8 1 3.0858 -1.2130 -0.0729
9 6 1.3055 -2.4323 0.0937
10 6 1.8648 -3.5186 0.7947
11 6 1.1801 -4.6950 0.8809
12 6 -0.0705 -4.8240 0.2768
13 7 -0.7631 -6.0284 0.3689
14 6 -0.6815 -6.7686 1.4923
15 8 0.0575 -6.4249 2.3944
16 7 -1.4190 -7.8899 1.6154
17 6 -1.3299 -8.6948 2.8363
18 6 -2.2614 -9.9030 2.7198
19 6 -2.1692 -10.7313 3.9754
20 6 -3.0411 -10.5310 4.9162
21 6 -3.0435 -11.2890 6.2123
22 7 -2.2276 -12.5034 6.0968
23 6 -0.9024 -12.1766 5.5443
24 6 -1.0724 -11.7532 4.0831
25 6 -0.6281 -3.7546 -0.4237
26 6 0.0418 -2.5701 -0.5133
27 1 -0.4849 0.8402 0.0004
28 1 2.8332 -3.4203 1.2625
29 1 1.6074 -5.5286 1.4183
30 1 -1.3045 -6.3347 -0.3755
31 1 -2.0088 -8.1640 0.8958
32 1 -1.6259 -8.0895 3.6930
33 1 -0.3042 -9.0382 2.9710
34 1 -1.9657 -10.5085 1.8630
35 1 -3.2870 -9.5594 2.5852
36 1 -3.8029 -9.7819 4.7586
37 1 -2.6346 -10.6570 7.0007
38 1 -4.0666 -11.5663 6.4662
39 1 -2.6943 -13.1961 5.5310
40 1 -0.2564 -13.0528 5.5992
41 1 -0.4598 -11.3590 6.1134
42 1 -0.1392 -11.3233 3.7192
43 1 -1.3283 -12.6248 3.4805
44 1 -1.5948 -3.8635 -0.8929
45 1 -0.3930 -1.7416 -1.0527
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000577471004.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:16:52
Heat of formation + Delta-G solvation = 3.290551 kcal
Electronic energy + Delta-G solvation = -24655.125709 eV
Core-core repulsion = 21057.952908 eV
Total energy + Delta-G solvation = -3597.172801 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-39.98148 -39.38113 -37.48330 -35.66691 -34.32603 -33.37792 -32.70098 -31.22653
-29.61974 -29.30387 -28.31736 -25.17843 -24.29195 -23.59886 -22.29537 -21.53986
-20.85834 -20.07855 -18.61431 -17.92886 -17.22123 -16.67692 -16.04338 -15.68365
-15.27969 -15.16129 -15.04536 -14.73232 -14.40990 -14.11538 -13.88372 -13.66648
-13.24900 -12.96180 -12.74214 -12.66146 -12.24387 -12.08666 -12.05949 -11.86423
-11.67170 -11.51116 -11.31553 -11.12517 -11.07383 -10.93973 -10.68801 -10.07361
-9.52226 -9.43240 -9.24602 -9.16421 -8.93821 -8.88349 -8.82160 -7.50028
-6.79593 -6.57430 -4.29544 1.74430 2.69730 3.03845 3.11446 3.11921
3.16139 3.21234 3.72123 3.87730 4.01416 4.33261 4.43886 4.65694
4.70512 4.74643 4.76018 4.83322 4.96059 5.07708 5.23823 5.27062
5.34048 5.47204 5.47677 5.62563 5.68446 5.74512 5.85213 6.13040
6.22626 6.46574 6.48230 6.58120 6.58642 6.80394 6.85446 6.93342
7.08657 7.19338 7.30761 7.44343 7.69397 7.90189 8.00950 8.13675
8.35140 8.49647 8.68193 8.96525 8.97537 9.12465 10.33855
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.032381 B = 0.001953 C = 0.001930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.489714 B =14333.203738 C =14507.812842
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.814 5.814
2 C 0.069 3.931
3 Si 0.915 3.085
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.264 1.264
7 C -0.461 4.461
8 H 0.075 0.925
9 C 0.097 3.903
10 C -0.204 4.204
11 C -0.087 4.087
12 C 0.024 3.976
13 N -0.668 5.668
14 C 0.694 3.306
15 O -0.577 6.577
16 N -0.755 5.755
17 C 0.148 3.852
18 C -0.097 4.097
19 C -0.115 4.115
20 C -0.191 4.191
21 C 0.083 3.917
22 N -0.681 5.681
23 C 0.053 3.947
24 C -0.124 4.124
25 C -0.124 4.124
26 C -0.140 4.140
27 H 0.277 0.723
28 H 0.095 0.905
29 H 0.108 0.892
30 H 0.391 0.609
31 H 0.392 0.608
32 H 0.064 0.936
33 H 0.064 0.936
34 H 0.074 0.926
35 H 0.074 0.926
36 H 0.110 0.890
37 H 0.085 0.915
38 H 0.083 0.917
39 H 0.340 0.660
40 H 0.080 0.920
41 H 0.077 0.923
42 H 0.081 0.919
43 H 0.074 0.926
44 H 0.090 0.910
45 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.920 -21.172 4.494 23.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.442 5.442
2 C -0.146 4.146
3 Si 0.740 3.260
4 H -0.196 1.196
5 H -0.204 1.204
6 H -0.188 1.188
7 C -0.492 4.492
8 H 0.093 0.907
9 C 0.094 3.906
10 C -0.224 4.224
11 C -0.107 4.107
12 C -0.069 4.069
13 N -0.314 5.314
14 C 0.395 3.605
15 O -0.454 6.454
16 N -0.412 5.412
17 C 0.024 3.976
18 C -0.134 4.134
19 C -0.116 4.116
20 C -0.210 4.210
21 C -0.046 4.046
22 N -0.309 5.309
23 C -0.077 4.077
24 C -0.162 4.162
25 C -0.144 4.144
26 C -0.160 4.160
27 H 0.088 0.912
28 H 0.114 0.886
29 H 0.126 0.874
30 H 0.224 0.776
31 H 0.225 0.775
32 H 0.082 0.918
33 H 0.082 0.918
34 H 0.093 0.907
35 H 0.092 0.908
36 H 0.128 0.872
37 H 0.103 0.897
38 H 0.101 0.899
39 H 0.157 0.843
40 H 0.099 0.901
41 H 0.096 0.904
42 H 0.100 0.900
43 H 0.093 0.907
44 H 0.108 0.892
45 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -7.218 -20.682 6.053 22.726
hybrid contribution -0.622 0.814 -1.657 1.948
sum -7.840 -19.868 4.396 21.806
Atomic orbital electron populations
1.69775 1.07249 1.28569 1.38559 1.25873 0.94944 1.01112 0.92655
0.86203 0.80240 0.80573 0.78975 1.19584 1.20361 1.18762 1.19474
0.94677 0.90210 1.44888 0.90680 1.17720 0.92347 0.92034 0.88451
1.20810 1.01190 0.94931 1.05442 1.20426 0.92789 0.97947 0.99557
1.17080 0.93738 0.85012 1.11081 1.42118 1.51715 1.22149 1.15369
1.16023 0.81307 0.80058 0.83149 1.90910 1.42188 1.71493 1.40813
1.45122 1.48522 1.26768 1.20774 1.21021 0.99483 0.90318 0.86816
1.20907 1.00439 0.95622 0.96468 1.20751 0.96929 0.97949 0.95927
1.22904 0.99916 1.01611 0.96606 1.20927 0.98182 0.90837 0.94696
1.61118 1.04180 1.10837 1.54760 1.22143 0.91548 1.01586 0.92423
1.21161 0.98164 0.97820 0.99066 1.20293 0.98373 0.93058 1.02712
1.21173 0.97311 0.95440 1.02105 0.91244 0.88632 0.87380 0.77580
0.77535 0.91752 0.91788 0.90705 0.90751 0.87221 0.89659 0.89918
0.84293 0.90148 0.90433 0.90024 0.90737 0.89184 0.85042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -21.51 10.60 55.55 0.59 -20.92 16
2 C 0.07 1.77 5.42 -17.33 -0.09 1.67 16
3 Si 0.92 19.32 29.56 -169.99 -5.03 14.30 16
4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16
5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16
6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16
7 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16
8 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16
9 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16
10 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16
11 C -0.09 -2.15 8.61 -39.79 -0.34 -2.49 16
12 C 0.02 0.54 6.31 -83.57 -0.53 0.01 16
13 N -0.67 -11.99 5.31 -14.10 -0.07 -12.06 16
14 C 0.69 12.61 8.39 -86.92 -0.73 11.88 16
15 O -0.58 -13.16 13.76 5.30 0.07 -13.09 16
16 N -0.75 -9.53 5.56 -65.23 -0.36 -9.89 16
17 C 0.15 1.69 5.66 -4.04 -0.02 1.67 16
18 C -0.10 -0.76 5.38 -27.88 -0.15 -0.91 16
19 C -0.11 -0.90 5.15 -100.93 -0.52 -1.42 16
20 C -0.19 -1.47 9.50 -35.97 -0.34 -1.81 16
21 C 0.08 0.58 6.74 -5.32 -0.04 0.55 16
22 N -0.68 -4.83 6.99 -115.15 -0.80 -5.64 16
23 C 0.05 0.37 6.64 -3.59 -0.02 0.34 16
24 C -0.12 -0.85 5.95 -28.03 -0.17 -1.02 16
25 C -0.12 -2.87 9.90 -39.79 -0.39 -3.26 16
26 C -0.14 -3.66 8.61 -39.26 -0.34 -4.00 16
27 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16
28 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16
29 H 0.11 2.66 6.22 -52.49 -0.33 2.34 16
30 H 0.39 5.41 8.83 -40.82 -0.36 5.05 16
31 H 0.39 3.60 8.49 -40.82 -0.35 3.25 16
32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
34 H 0.07 0.52 8.13 -51.92 -0.42 0.10 16
35 H 0.07 0.54 7.85 -51.93 -0.41 0.14 16
36 H 0.11 0.82 7.81 -52.49 -0.41 0.41 16
37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.34 2.03 8.77 -39.29 -0.34 1.69 16
40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16
41 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16
42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
44 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16
45 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16
LS Contribution 369.24 15.07 5.56 5.56
Total: -1.00 -32.00 369.24 -11.76 -43.76
By element:
Atomic # 1 Polarization: 19.96 SS G_CDS: -6.71 Total: 13.25 kcal
Atomic # 6 Polarization: -10.26 SS G_CDS: -5.00 Total: -15.26 kcal
Atomic # 7 Polarization: -47.86 SS G_CDS: -0.65 Total: -48.52 kcal
Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.09 kcal
Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -32.00 -11.76 -43.76 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000577471004.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.050 kcal
(2) G-P(sol) polarization free energy of solvation -32.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.291 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds