Wall clock time and date at job start Tue Mar 31 2020 12:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86799 * 120.00510 * 2 1 4 4 H 1.48496 * 109.46881 * 270.00354 * 3 2 1 5 5 H 1.48505 * 109.46697 * 29.99818 * 3 2 1 6 6 H 1.48494 * 109.46974 * 149.99738 * 3 2 1 7 7 C 1.39899 * 119.99354 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99541 * 175.56420 * 7 2 1 9 9 C 1.41158 * 120.00200 * 355.55369 * 7 2 1 10 10 C 1.40868 * 120.16232 * 214.78285 * 9 7 2 11 11 C 1.36380 * 119.82398 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16938 * 0.02769 * 11 10 9 13 13 N 1.39240 * 119.83153 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99876 * 35.29522 * 13 12 11 15 15 O 1.21575 * 120.00373 * 355.70314 * 14 13 12 16 16 N 1.34774 * 119.99701 * 175.71297 * 14 13 12 17 17 C 1.46499 * 119.99996 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47511 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47557 * 179.97438 * 18 17 16 20 20 C 1.29824 * 118.54979 * 95.02405 * 19 18 17 21 21 C 1.50140 * 123.28090 * 180.37496 * 20 19 18 22 22 N 1.46758 * 110.42557 * 343.08515 * 21 20 19 23 23 C 1.47250 * 110.25520 * 50.58684 * 22 21 20 24 24 C 1.50302 * 118.55637 * 275.00577 * 19 18 17 25 25 C 1.39480 * 120.33217 * 0.24413 * 12 11 10 26 26 C 1.36376 * 120.16925 * 359.44898 * 25 12 11 27 27 H 0.97005 * 119.99212 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.08823 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.90848 * 180.02562 * 11 10 9 30 30 H 0.97003 * 120.00048 * 215.29601 * 13 12 11 31 31 H 0.96999 * 120.00172 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47386 * 59.99649 * 17 16 14 33 33 H 1.09000 * 109.47272 * 299.99726 * 17 16 14 34 34 H 1.09007 * 109.47158 * 59.99859 * 18 17 16 35 35 H 1.08997 * 109.47652 * 300.00618 * 18 17 16 36 36 H 1.07998 * 118.35639 * 0.39764 * 20 19 18 37 37 H 1.09006 * 109.33571 * 103.19844 * 21 20 19 38 38 H 1.09003 * 109.33298 * 222.86241 * 21 20 19 39 39 H 1.00895 * 110.79918 * 287.30721 * 22 21 20 40 40 H 1.08995 * 109.63646 * 171.72343 * 23 22 21 41 41 H 1.08998 * 109.63313 * 51.31569 * 23 22 21 42 42 H 1.08998 * 109.42994 * 43.41835 * 24 19 18 43 43 H 1.09002 * 109.43025 * 283.57649 * 24 19 18 44 44 H 1.08006 * 119.91239 * 179.70379 * 25 12 11 45 45 H 1.08002 * 120.08464 * 180.24489 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4399 0.7001 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0729 9 6 1.3055 -2.4323 0.0937 10 6 1.8648 -3.5186 0.7947 11 6 1.1801 -4.6950 0.8809 12 6 -0.0705 -4.8240 0.2768 13 7 -0.7631 -6.0284 0.3689 14 6 -0.6815 -6.7686 1.4923 15 8 0.0575 -6.4249 2.3944 16 7 -1.4190 -7.8899 1.6154 17 6 -1.3299 -8.6948 2.8363 18 6 -2.2614 -9.9030 2.7198 19 6 -2.1692 -10.7313 3.9754 20 6 -3.0411 -10.5310 4.9162 21 6 -3.0435 -11.2890 6.2123 22 7 -2.2276 -12.5034 6.0968 23 6 -0.9024 -12.1766 5.5443 24 6 -1.0724 -11.7532 4.0831 25 6 -0.6281 -3.7546 -0.4237 26 6 0.0418 -2.5701 -0.5133 27 1 -0.4849 0.8402 0.0004 28 1 2.8332 -3.4203 1.2625 29 1 1.6074 -5.5286 1.4183 30 1 -1.3045 -6.3347 -0.3755 31 1 -2.0088 -8.1640 0.8958 32 1 -1.6259 -8.0895 3.6930 33 1 -0.3042 -9.0382 2.9710 34 1 -1.9657 -10.5085 1.8630 35 1 -3.2870 -9.5594 2.5852 36 1 -3.8029 -9.7819 4.7586 37 1 -2.6346 -10.6570 7.0007 38 1 -4.0666 -11.5663 6.4662 39 1 -2.6943 -13.1961 5.5310 40 1 -0.2564 -13.0528 5.5992 41 1 -0.4598 -11.3590 6.1134 42 1 -0.1392 -11.3233 3.7192 43 1 -1.3283 -12.6248 3.4805 44 1 -1.5948 -3.8635 -0.8929 45 1 -0.3930 -1.7416 -1.0527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577471004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:52 Heat of formation + Delta-G solvation = 3.290551 kcal Electronic energy + Delta-G solvation = -24655.125709 eV Core-core repulsion = 21057.952908 eV Total energy + Delta-G solvation = -3597.172801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.98148 -39.38113 -37.48330 -35.66691 -34.32603 -33.37792 -32.70098 -31.22653 -29.61974 -29.30387 -28.31736 -25.17843 -24.29195 -23.59886 -22.29537 -21.53986 -20.85834 -20.07855 -18.61431 -17.92886 -17.22123 -16.67692 -16.04338 -15.68365 -15.27969 -15.16129 -15.04536 -14.73232 -14.40990 -14.11538 -13.88372 -13.66648 -13.24900 -12.96180 -12.74214 -12.66146 -12.24387 -12.08666 -12.05949 -11.86423 -11.67170 -11.51116 -11.31553 -11.12517 -11.07383 -10.93973 -10.68801 -10.07361 -9.52226 -9.43240 -9.24602 -9.16421 -8.93821 -8.88349 -8.82160 -7.50028 -6.79593 -6.57430 -4.29544 1.74430 2.69730 3.03845 3.11446 3.11921 3.16139 3.21234 3.72123 3.87730 4.01416 4.33261 4.43886 4.65694 4.70512 4.74643 4.76018 4.83322 4.96059 5.07708 5.23823 5.27062 5.34048 5.47204 5.47677 5.62563 5.68446 5.74512 5.85213 6.13040 6.22626 6.46574 6.48230 6.58120 6.58642 6.80394 6.85446 6.93342 7.08657 7.19338 7.30761 7.44343 7.69397 7.90189 8.00950 8.13675 8.35140 8.49647 8.68193 8.96525 8.97537 9.12465 10.33855 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.032381 B = 0.001953 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.489714 B =14333.203738 C =14507.812842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.024 3.976 13 N -0.668 5.668 14 C 0.694 3.306 15 O -0.577 6.577 16 N -0.755 5.755 17 C 0.148 3.852 18 C -0.097 4.097 19 C -0.115 4.115 20 C -0.191 4.191 21 C 0.083 3.917 22 N -0.681 5.681 23 C 0.053 3.947 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.140 4.140 27 H 0.277 0.723 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.391 0.609 31 H 0.392 0.608 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.340 0.660 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.920 -21.172 4.494 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.094 3.906 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.069 4.069 13 N -0.314 5.314 14 C 0.395 3.605 15 O -0.454 6.454 16 N -0.412 5.412 17 C 0.024 3.976 18 C -0.134 4.134 19 C -0.116 4.116 20 C -0.210 4.210 21 C -0.046 4.046 22 N -0.309 5.309 23 C -0.077 4.077 24 C -0.162 4.162 25 C -0.144 4.144 26 C -0.160 4.160 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.224 0.776 31 H 0.225 0.775 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.157 0.843 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.218 -20.682 6.053 22.726 hybrid contribution -0.622 0.814 -1.657 1.948 sum -7.840 -19.868 4.396 21.806 Atomic orbital electron populations 1.69775 1.07249 1.28569 1.38559 1.25873 0.94944 1.01112 0.92655 0.86203 0.80240 0.80573 0.78975 1.19584 1.20361 1.18762 1.19474 0.94677 0.90210 1.44888 0.90680 1.17720 0.92347 0.92034 0.88451 1.20810 1.01190 0.94931 1.05442 1.20426 0.92789 0.97947 0.99557 1.17080 0.93738 0.85012 1.11081 1.42118 1.51715 1.22149 1.15369 1.16023 0.81307 0.80058 0.83149 1.90910 1.42188 1.71493 1.40813 1.45122 1.48522 1.26768 1.20774 1.21021 0.99483 0.90318 0.86816 1.20907 1.00439 0.95622 0.96468 1.20751 0.96929 0.97949 0.95927 1.22904 0.99916 1.01611 0.96606 1.20927 0.98182 0.90837 0.94696 1.61118 1.04180 1.10837 1.54760 1.22143 0.91548 1.01586 0.92423 1.21161 0.98164 0.97820 0.99066 1.20293 0.98373 0.93058 1.02712 1.21173 0.97311 0.95440 1.02105 0.91244 0.88632 0.87380 0.77580 0.77535 0.91752 0.91788 0.90705 0.90751 0.87221 0.89659 0.89918 0.84293 0.90148 0.90433 0.90024 0.90737 0.89184 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.51 10.60 55.55 0.59 -20.92 16 2 C 0.07 1.77 5.42 -17.33 -0.09 1.67 16 3 Si 0.92 19.32 29.56 -169.99 -5.03 14.30 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 10 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16 11 C -0.09 -2.15 8.61 -39.79 -0.34 -2.49 16 12 C 0.02 0.54 6.31 -83.57 -0.53 0.01 16 13 N -0.67 -11.99 5.31 -14.10 -0.07 -12.06 16 14 C 0.69 12.61 8.39 -86.92 -0.73 11.88 16 15 O -0.58 -13.16 13.76 5.30 0.07 -13.09 16 16 N -0.75 -9.53 5.56 -65.23 -0.36 -9.89 16 17 C 0.15 1.69 5.66 -4.04 -0.02 1.67 16 18 C -0.10 -0.76 5.38 -27.88 -0.15 -0.91 16 19 C -0.11 -0.90 5.15 -100.93 -0.52 -1.42 16 20 C -0.19 -1.47 9.50 -35.97 -0.34 -1.81 16 21 C 0.08 0.58 6.74 -5.32 -0.04 0.55 16 22 N -0.68 -4.83 6.99 -115.15 -0.80 -5.64 16 23 C 0.05 0.37 6.64 -3.59 -0.02 0.34 16 24 C -0.12 -0.85 5.95 -28.03 -0.17 -1.02 16 25 C -0.12 -2.87 9.90 -39.79 -0.39 -3.26 16 26 C -0.14 -3.66 8.61 -39.26 -0.34 -4.00 16 27 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 28 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 29 H 0.11 2.66 6.22 -52.49 -0.33 2.34 16 30 H 0.39 5.41 8.83 -40.82 -0.36 5.05 16 31 H 0.39 3.60 8.49 -40.82 -0.35 3.25 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.52 8.13 -51.92 -0.42 0.10 16 35 H 0.07 0.54 7.85 -51.93 -0.41 0.14 16 36 H 0.11 0.82 7.81 -52.49 -0.41 0.41 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.34 2.03 8.77 -39.29 -0.34 1.69 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -32.00 369.24 -11.76 -43.76 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.71 Total: 13.25 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -5.00 Total: -15.26 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.65 Total: -48.52 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.00 -11.76 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577471004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.050 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds