Wall clock time and date at job start Tue Mar 31 2020 12:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86799 * 120.00510 * 2 1 4 4 H 1.48496 * 109.46881 * 270.00354 * 3 2 1 5 5 H 1.48505 * 109.46697 * 29.99818 * 3 2 1 6 6 H 1.48494 * 109.46974 * 149.99738 * 3 2 1 7 7 C 1.39899 * 119.99354 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99541 * 175.56420 * 7 2 1 9 9 C 1.41158 * 120.00200 * 355.55369 * 7 2 1 10 10 C 1.40868 * 120.16232 * 214.78285 * 9 7 2 11 11 C 1.36380 * 119.82398 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16938 * 0.02769 * 11 10 9 13 13 N 1.39240 * 119.83153 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99876 * 35.29522 * 13 12 11 15 15 O 1.21575 * 120.00373 * 355.70314 * 14 13 12 16 16 N 1.34774 * 119.99701 * 175.71297 * 14 13 12 17 17 C 1.46499 * 119.99996 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47511 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47557 * 179.97438 * 18 17 16 20 20 C 1.29824 * 118.54979 * 95.02405 * 19 18 17 21 21 C 1.50140 * 123.28090 * 180.37496 * 20 19 18 22 22 N 1.46758 * 110.42557 * 343.08515 * 21 20 19 23 23 C 1.47250 * 110.25520 * 50.58684 * 22 21 20 24 24 C 1.50302 * 118.55637 * 275.00577 * 19 18 17 25 25 C 1.39480 * 120.33217 * 0.24413 * 12 11 10 26 26 C 1.36376 * 120.16925 * 359.44898 * 25 12 11 27 27 H 0.97005 * 119.99212 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.08823 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.90848 * 180.02562 * 11 10 9 30 30 H 0.97003 * 120.00048 * 215.29601 * 13 12 11 31 31 H 0.96999 * 120.00172 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47386 * 59.99649 * 17 16 14 33 33 H 1.09000 * 109.47272 * 299.99726 * 17 16 14 34 34 H 1.09007 * 109.47158 * 59.99859 * 18 17 16 35 35 H 1.08997 * 109.47652 * 300.00618 * 18 17 16 36 36 H 1.07998 * 118.35639 * 0.39764 * 20 19 18 37 37 H 1.09006 * 109.33571 * 103.19844 * 21 20 19 38 38 H 1.09003 * 109.33298 * 222.86241 * 21 20 19 39 39 H 1.00895 * 110.79918 * 287.30721 * 22 21 20 40 40 H 1.08995 * 109.63646 * 171.72343 * 23 22 21 41 41 H 1.08998 * 109.63313 * 51.31569 * 23 22 21 42 42 H 1.08998 * 109.42994 * 43.41835 * 24 19 18 43 43 H 1.09002 * 109.43025 * 283.57649 * 24 19 18 44 44 H 1.08006 * 119.91239 * 179.70379 * 25 12 11 45 45 H 1.08002 * 120.08464 * 180.24489 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4399 0.7001 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0729 9 6 1.3055 -2.4323 0.0937 10 6 1.8648 -3.5186 0.7947 11 6 1.1801 -4.6950 0.8809 12 6 -0.0705 -4.8240 0.2768 13 7 -0.7631 -6.0284 0.3689 14 6 -0.6815 -6.7686 1.4923 15 8 0.0575 -6.4249 2.3944 16 7 -1.4190 -7.8899 1.6154 17 6 -1.3299 -8.6948 2.8363 18 6 -2.2614 -9.9030 2.7198 19 6 -2.1692 -10.7313 3.9754 20 6 -3.0411 -10.5310 4.9162 21 6 -3.0435 -11.2890 6.2123 22 7 -2.2276 -12.5034 6.0968 23 6 -0.9024 -12.1766 5.5443 24 6 -1.0724 -11.7532 4.0831 25 6 -0.6281 -3.7546 -0.4237 26 6 0.0418 -2.5701 -0.5133 27 1 -0.4849 0.8402 0.0004 28 1 2.8332 -3.4203 1.2625 29 1 1.6074 -5.5286 1.4183 30 1 -1.3045 -6.3347 -0.3755 31 1 -2.0088 -8.1640 0.8958 32 1 -1.6259 -8.0895 3.6930 33 1 -0.3042 -9.0382 2.9710 34 1 -1.9657 -10.5085 1.8630 35 1 -3.2870 -9.5594 2.5852 36 1 -3.8029 -9.7819 4.7586 37 1 -2.6346 -10.6570 7.0007 38 1 -4.0666 -11.5663 6.4662 39 1 -2.6943 -13.1961 5.5310 40 1 -0.2564 -13.0528 5.5992 41 1 -0.4598 -11.3590 6.1134 42 1 -0.1392 -11.3233 3.7192 43 1 -1.3283 -12.6248 3.4805 44 1 -1.5948 -3.8635 -0.8929 45 1 -0.3930 -1.7416 -1.0527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577471004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:51 Heat of formation + Delta-G solvation = -18.302373 kcal Electronic energy + Delta-G solvation = -24656.062049 eV Core-core repulsion = 21057.952908 eV Total energy + Delta-G solvation = -3598.109141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44192 -40.05571 -39.24406 -36.78649 -36.03041 -34.80390 -34.00758 -31.77559 -31.48618 -30.87884 -29.56463 -26.80381 -25.26246 -24.24409 -23.45328 -22.92555 -22.58217 -21.69711 -19.56238 -19.20493 -18.98288 -18.24460 -17.08136 -16.83490 -16.74552 -16.03384 -15.87191 -15.74472 -15.62807 -15.53483 -15.25017 -14.85857 -14.51790 -14.32146 -13.99308 -13.88437 -13.58851 -13.38147 -13.23150 -12.99209 -12.87433 -12.79838 -12.70139 -12.47742 -12.46878 -12.15035 -11.83920 -11.62209 -11.40111 -11.25027 -11.03471 -10.67048 -10.13165 -9.79721 -9.45785 -9.42776 -8.68728 -8.49120 -6.31399 0.84735 1.11488 1.15348 1.39709 1.47357 1.54499 1.78551 2.18691 2.25394 2.82105 3.29256 3.41719 3.69205 3.75976 3.92346 4.01403 4.12892 4.16324 4.29640 4.40000 4.49996 4.53064 4.55743 4.70506 4.74633 4.84688 4.92404 4.95170 4.98476 5.01260 5.09785 5.14158 5.15696 5.33429 5.43138 5.45812 5.56057 5.70118 5.82779 5.91684 6.01024 6.03882 6.12232 6.26022 6.40791 6.45835 6.69366 6.97998 7.02009 7.14982 7.63833 8.43653 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.032381 B = 0.001953 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.489714 B =14333.203738 C =14507.812842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.219 4.219 11 C -0.099 4.099 12 C 0.041 3.959 13 N -0.658 5.658 14 C 0.691 3.309 15 O -0.626 6.626 16 N -0.728 5.728 17 C 0.149 3.851 18 C -0.083 4.083 19 C -0.125 4.125 20 C -0.192 4.192 21 C 0.082 3.918 22 N -0.687 5.687 23 C 0.053 3.947 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.157 4.157 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.415 0.585 31 H 0.414 0.586 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.348 0.652 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.126 0.874 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.408 -22.462 3.916 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.240 4.240 11 C -0.119 4.119 12 C -0.054 4.054 13 N -0.306 5.306 14 C 0.391 3.609 15 O -0.507 6.507 16 N -0.386 5.386 17 C 0.025 3.975 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.212 4.212 21 C -0.047 4.047 22 N -0.315 5.315 23 C -0.077 4.077 24 C -0.159 4.159 25 C -0.140 4.140 26 C -0.177 4.177 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.252 0.748 31 H 0.250 0.750 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.166 0.834 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.144 0.856 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.769 -22.053 5.435 24.347 hybrid contribution -0.242 1.028 -1.420 1.770 sum -9.011 -21.025 4.015 23.224 Atomic orbital electron populations 1.69835 1.08535 1.29882 1.38798 1.26744 0.95847 1.04296 0.91649 0.85100 0.78631 0.75820 0.79476 1.18339 1.19435 1.18771 1.19701 0.94791 0.91325 1.47060 0.91009 1.18040 0.93483 0.92691 0.89592 1.20923 1.01579 0.95496 1.05953 1.20523 0.93845 0.97448 1.00106 1.17095 0.92969 0.86488 1.08803 1.41872 1.51517 1.20725 1.16499 1.16229 0.81251 0.80974 0.82412 1.90889 1.44383 1.72957 1.42447 1.44890 1.47175 1.24746 1.21773 1.21090 0.99893 0.91043 0.85453 1.20807 1.00003 0.94029 0.97203 1.20864 0.97324 0.98376 0.96029 1.23035 0.99934 1.01507 0.96728 1.20948 0.98884 0.90745 0.94160 1.61108 1.04270 1.11029 1.55105 1.22131 0.91709 1.01537 0.92329 1.21147 0.97614 0.98063 0.99092 1.20536 0.99370 0.91935 1.02195 1.21167 0.97442 0.96393 1.02734 0.90525 0.88725 0.87630 0.74766 0.74956 0.93708 0.92940 0.89028 0.89579 0.87045 0.90516 0.88571 0.83424 0.89090 0.91923 0.90557 0.89390 0.85627 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.13 10.60 21.82 0.23 -44.90 16 2 C 0.03 1.37 5.42 85.24 0.46 1.83 16 3 Si 0.99 39.83 29.56 68.60 2.03 41.86 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.50 -27.90 9.02 23.39 0.21 -27.69 16 8 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 9 C 0.06 3.63 5.55 -21.28 -0.12 3.51 16 10 C -0.22 -11.79 9.74 22.48 0.22 -11.57 16 11 C -0.10 -4.95 8.61 22.14 0.19 -4.76 16 12 C 0.04 1.81 6.31 38.56 0.24 2.05 16 13 N -0.66 -22.23 5.31 -316.79 -1.68 -23.91 16 14 C 0.69 24.09 8.39 179.05 1.50 25.59 16 15 O -0.63 -28.55 13.76 -3.95 -0.05 -28.61 16 16 N -0.73 -16.67 5.56 -478.56 -2.66 -19.33 16 17 C 0.15 3.19 5.66 86.38 0.49 3.67 16 18 C -0.08 -1.08 5.38 29.85 0.16 -0.92 16 19 C -0.12 -1.73 5.15 -15.40 -0.08 -1.81 16 20 C -0.19 -2.66 9.50 26.68 0.25 -2.41 16 21 C 0.08 1.05 6.74 85.41 0.58 1.62 16 22 N -0.69 -8.79 6.99 -518.24 -3.62 -12.41 16 23 C 0.05 0.67 6.64 86.26 0.57 1.25 16 24 C -0.12 -1.47 5.95 29.75 0.18 -1.29 16 25 C -0.12 -5.44 9.90 22.13 0.22 -5.22 16 26 C -0.16 -8.33 8.61 22.48 0.19 -8.13 16 27 H 0.28 13.81 8.30 -92.70 -0.77 13.04 16 28 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 29 H 0.11 5.31 6.22 -2.91 -0.02 5.29 16 30 H 0.42 10.07 8.83 -92.71 -0.82 9.25 16 31 H 0.41 6.07 8.49 -92.71 -0.79 5.28 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 0.94 8.13 -2.38 -0.02 0.92 16 35 H 0.09 0.97 7.85 -2.39 -0.02 0.95 16 36 H 0.11 1.48 7.81 -2.91 -0.02 1.46 16 37 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.35 3.50 8.77 -89.70 -0.79 2.72 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 45 H 0.12 6.57 6.13 -2.91 -0.02 6.55 16 Total: -1.00 -71.32 369.24 -1.85 -73.17 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -1.36 Total: 38.39 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 5.27 Total: -24.27 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -7.73 Total: -100.54 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.61 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -71.32 -1.85 -73.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577471004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.869 kcal (2) G-P(sol) polarization free energy of solvation -71.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds