Wall clock time and date at job start Tue Mar 31 2020 12:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00227 * 2 1 4 4 H 1.48496 * 109.47379 * 270.00700 * 3 2 1 5 5 H 1.48501 * 109.47182 * 30.00211 * 3 2 1 6 6 H 1.48501 * 109.47570 * 150.00154 * 3 2 1 7 7 C 1.37880 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00429 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99828 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47081 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46957 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46726 * 55.00408 * 11 10 9 13 13 N 1.46892 * 109.47338 * 295.00279 * 11 10 9 14 14 C 1.50701 * 109.46749 * 175.00015 * 11 10 9 15 15 O 1.21285 * 119.99949 * 100.00289 * 14 11 10 16 16 N 1.34775 * 120.00291 * 279.99981 * 14 11 10 17 17 C 1.46497 * 120.00307 * 180.02562 * 16 14 11 18 18 C 1.53004 * 109.47367 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.47351 * 179.97438 * 18 17 16 20 20 C 1.34242 * 125.03172 * 84.99801 * 19 18 17 21 21 C 1.46486 * 106.99231 * 179.97438 * 20 19 18 22 22 C 1.39635 * 134.02433 * 180.02562 * 21 20 19 23 23 C 1.36628 * 119.75966 * 179.97438 * 22 21 20 24 24 C 1.38831 * 120.53083 * 0.03734 * 23 22 21 25 25 C 1.37755 * 120.66440 * 359.94200 * 24 23 22 26 26 C 1.39127 * 119.78052 * 0.03895 * 25 24 23 27 27 N 1.36827 * 125.03421 * 264.98123 * 19 18 17 28 28 H 0.96998 * 125.06640 * 0.03625 * 27 19 18 29 29 H 0.97001 * 120.00078 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47367 * 60.00428 * 9 7 2 31 31 H 1.08999 * 109.47507 * 299.99906 * 9 7 2 32 32 H 1.08999 * 109.47039 * 60.00272 * 10 9 7 33 33 H 1.08995 * 109.47311 * 299.99693 * 10 9 7 34 34 H 1.00906 * 111.00093 * 299.99532 * 13 11 10 35 35 H 1.00899 * 111.00362 * 63.95289 * 13 11 10 36 36 H 0.97006 * 120.00168 * 0.02562 * 16 14 11 37 37 H 1.09001 * 109.47212 * 59.99947 * 17 16 14 38 38 H 1.08998 * 109.47240 * 300.00070 * 17 16 14 39 39 H 1.08997 * 109.46697 * 59.99912 * 18 17 16 40 40 H 1.08998 * 109.46848 * 300.00126 * 18 17 16 41 41 H 1.07994 * 126.50109 * 359.95899 * 20 19 18 42 42 H 1.07997 * 120.12300 * 359.71971 * 22 21 20 43 43 H 1.08002 * 119.73294 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.67172 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.10946 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 1 5.9154 -2.0469 0.8391 13 7 6.0402 -2.0517 -1.2580 14 6 6.0539 -4.0520 0.1217 15 8 6.4273 -4.6515 -0.8643 16 7 6.0884 -4.6516 1.3282 17 6 6.5773 -6.0273 1.4488 18 6 6.5116 -6.4655 2.9133 19 6 7.0140 -7.8809 3.0372 20 6 8.3033 -8.2327 3.1638 21 6 8.3414 -9.6943 3.2529 22 6 9.3670 -10.6316 3.3927 23 6 9.0661 -11.9632 3.4467 24 6 7.7485 -12.3924 3.3629 25 6 6.7213 -11.4849 3.2251 26 6 7.0047 -10.1240 3.1684 27 7 6.2235 -8.9977 3.0378 28 1 5.2568 -8.9963 2.9579 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 3.6579 -3.1506 -0.8907 33 1 3.6586 -3.1502 0.8892 34 1 5.7161 -2.5809 -2.0536 35 1 5.7707 -1.0824 -1.3344 36 1 5.7895 -4.1723 2.1169 37 1 7.6087 -6.0783 1.0999 38 1 5.9561 -6.6880 0.8441 39 1 5.4801 -6.4146 3.2618 40 1 7.1326 -5.8049 3.5183 41 1 9.1514 -7.5648 3.1939 42 1 10.3947 -10.3054 3.4538 43 1 9.8597 -12.6878 3.5544 44 1 7.5264 -13.4484 3.4067 45 1 5.6995 -11.8287 3.1612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578542803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:15 Heat of formation + Delta-G solvation = 0.920096 kcal Electronic energy + Delta-G solvation = -24411.610180 eV Core-core repulsion = 20814.334588 eV Total energy + Delta-G solvation = -3597.275592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59300 -39.72025 -37.50981 -35.90637 -35.18955 -32.84264 -32.45056 -31.62376 -30.35435 -29.59349 -28.26230 -26.75190 -24.52719 -23.04405 -22.34959 -21.70744 -20.75529 -20.45139 -19.84025 -18.00107 -17.42619 -16.75516 -16.57722 -16.27889 -15.42256 -15.36430 -14.91361 -14.63376 -14.44528 -14.29112 -14.16810 -14.12572 -13.90498 -13.29019 -13.24841 -12.90929 -12.71469 -12.65822 -12.49764 -12.10741 -11.90705 -11.71918 -11.57289 -11.37242 -11.15083 -11.01853 -10.39480 -10.15306 -9.99939 -9.90396 -9.47232 -9.35395 -9.10517 -8.65579 -8.45215 -8.35376 -7.98888 -6.15183 -4.14951 0.82252 1.36076 2.33880 2.74131 2.83031 3.19393 3.22484 3.30880 3.31730 3.65340 4.30864 4.34463 4.46445 4.61994 4.64524 4.75601 4.85237 4.97426 5.01557 5.08415 5.14383 5.16855 5.17835 5.31169 5.40448 5.46530 5.56482 5.65273 5.71172 5.73006 5.78772 6.08917 6.17448 6.28306 6.33392 6.38189 6.45707 6.51508 6.61482 6.87996 7.04635 7.17993 7.21240 7.28668 7.56212 7.63280 7.74696 8.35375 8.40886 8.88478 9.45989 10.97972 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.001962 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.446631 B =14268.758928 C =14819.919697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.130 4.130 11 C 0.072 3.928 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.535 6.535 16 N -0.736 5.736 17 C 0.127 3.873 18 C -0.072 4.072 19 C 0.088 3.912 20 C -0.195 4.195 21 C -0.108 4.108 22 C -0.071 4.071 23 C -0.149 4.149 24 C -0.101 4.101 25 C -0.130 4.130 26 C 0.098 3.902 27 N -0.591 5.591 28 H 0.415 0.585 29 H 0.264 0.736 30 H 0.019 0.981 31 H 0.012 0.988 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.348 0.652 35 H 0.351 0.649 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.147 0.853 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.887 -19.695 9.961 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.043 4.043 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.410 6.410 16 N -0.390 5.390 17 C 0.003 3.997 18 C -0.110 4.110 19 C -0.020 4.020 20 C -0.220 4.220 21 C -0.113 4.113 22 C -0.090 4.090 23 C -0.168 4.168 24 C -0.120 4.120 25 C -0.150 4.150 26 C -0.010 4.010 27 N -0.194 5.194 28 H 0.252 0.748 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.165 0.835 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.612 -20.134 9.490 28.384 hybrid contribution -1.452 1.202 0.168 1.892 sum 16.160 -18.932 9.658 26.700 Atomic orbital electron populations 1.69909 1.06346 1.27046 1.50577 1.25050 0.94770 0.99263 0.94395 0.86760 0.80296 0.83495 0.78603 1.20207 1.21317 1.18961 1.21061 0.89232 0.94516 1.51459 0.91109 1.19576 0.97549 0.91346 0.96341 1.22205 0.91272 1.01130 1.02319 1.21512 0.95634 0.91613 0.95573 0.88469 1.58726 1.66751 1.07432 1.03372 1.20801 0.76719 0.88747 0.82453 1.90657 1.47135 1.66161 1.37081 1.45960 1.67717 1.15037 1.10288 1.21221 1.00660 0.83066 0.94794 1.20477 1.02963 0.90224 0.97378 1.19982 0.90605 0.87865 1.03546 1.21493 0.95455 0.92879 1.12205 1.19216 0.92358 0.93518 1.06166 1.20296 0.98012 0.92118 0.98563 1.20634 0.96493 0.95533 1.04144 1.20804 0.92333 0.98881 1.00027 1.20053 0.99723 0.89220 1.06054 1.18236 0.90719 0.88242 1.03759 1.41769 1.08954 1.04000 1.64650 0.74765 0.92607 0.96317 0.97012 0.92089 0.91915 0.83825 0.83467 0.76337 0.90892 0.91650 0.89829 0.88280 0.83482 0.86068 0.86112 0.85832 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.52 -14.33 9.66 -34.44 -0.33 -14.66 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 10 C -0.13 -2.35 4.78 -26.73 -0.13 -2.48 16 11 C 0.07 1.11 3.21 -68.87 -0.22 0.89 16 12 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 13 N -0.83 -13.14 8.94 -5.66 -0.05 -13.19 16 14 C 0.53 8.08 7.08 -10.99 -0.08 8.00 16 15 O -0.54 -10.09 16.25 5.55 0.09 -10.00 16 16 N -0.74 -8.28 5.56 -60.29 -0.33 -8.62 16 17 C 0.13 1.27 5.66 -4.04 -0.02 1.25 16 18 C -0.07 -0.51 5.84 -27.88 -0.16 -0.67 16 19 C 0.09 0.77 6.34 -81.77 -0.52 0.25 16 20 C -0.20 -1.86 10.95 -37.67 -0.41 -2.28 16 21 C -0.11 -1.13 6.37 -105.14 -0.67 -1.80 16 22 C -0.07 -0.64 10.05 -39.64 -0.40 -1.04 16 23 C -0.15 -1.19 9.97 -39.94 -0.40 -1.59 16 24 C -0.10 -0.79 10.01 -39.54 -0.40 -1.19 16 25 C -0.13 -1.12 10.08 -39.43 -0.40 -1.51 16 26 C 0.10 0.97 7.28 -83.99 -0.61 0.36 16 27 N -0.59 -5.06 6.07 -6.95 -0.04 -5.10 16 28 H 0.42 2.62 8.96 -40.82 -0.37 2.26 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 31 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.35 5.66 8.58 -39.29 -0.34 5.33 16 35 H 0.35 5.33 7.55 -39.29 -0.30 5.04 16 36 H 0.40 3.52 8.47 -40.82 -0.35 3.17 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -34.25 376.18 -10.22 -44.47 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.71 Total: 11.94 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -4.95 Total: -15.01 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.35 Total: -53.21 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.25 -10.22 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578542803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.389 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds