Wall clock time and date at job start Tue Mar 31 2020 12:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00227 * 2 1 4 4 H 1.48496 * 109.47379 * 270.00700 * 3 2 1 5 5 H 1.48501 * 109.47182 * 30.00211 * 3 2 1 6 6 H 1.48501 * 109.47570 * 150.00154 * 3 2 1 7 7 C 1.37880 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00429 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99828 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47081 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46957 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46726 * 55.00408 * 11 10 9 13 13 N 1.46892 * 109.47338 * 295.00279 * 11 10 9 14 14 C 1.50701 * 109.46749 * 175.00015 * 11 10 9 15 15 O 1.21285 * 119.99949 * 100.00289 * 14 11 10 16 16 N 1.34775 * 120.00291 * 279.99981 * 14 11 10 17 17 C 1.46497 * 120.00307 * 180.02562 * 16 14 11 18 18 C 1.53004 * 109.47367 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.47351 * 179.97438 * 18 17 16 20 20 C 1.34242 * 125.03172 * 84.99801 * 19 18 17 21 21 C 1.46486 * 106.99231 * 179.97438 * 20 19 18 22 22 C 1.39635 * 134.02433 * 180.02562 * 21 20 19 23 23 C 1.36628 * 119.75966 * 179.97438 * 22 21 20 24 24 C 1.38831 * 120.53083 * 0.03734 * 23 22 21 25 25 C 1.37755 * 120.66440 * 359.94200 * 24 23 22 26 26 C 1.39127 * 119.78052 * 0.03895 * 25 24 23 27 27 N 1.36827 * 125.03421 * 264.98123 * 19 18 17 28 28 H 0.96998 * 125.06640 * 0.03625 * 27 19 18 29 29 H 0.97001 * 120.00078 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47367 * 60.00428 * 9 7 2 31 31 H 1.08999 * 109.47507 * 299.99906 * 9 7 2 32 32 H 1.08999 * 109.47039 * 60.00272 * 10 9 7 33 33 H 1.08995 * 109.47311 * 299.99693 * 10 9 7 34 34 H 1.00906 * 111.00093 * 299.99532 * 13 11 10 35 35 H 1.00899 * 111.00362 * 63.95289 * 13 11 10 36 36 H 0.97006 * 120.00168 * 0.02562 * 16 14 11 37 37 H 1.09001 * 109.47212 * 59.99947 * 17 16 14 38 38 H 1.08998 * 109.47240 * 300.00070 * 17 16 14 39 39 H 1.08997 * 109.46697 * 59.99912 * 18 17 16 40 40 H 1.08998 * 109.46848 * 300.00126 * 18 17 16 41 41 H 1.07994 * 126.50109 * 359.95899 * 20 19 18 42 42 H 1.07997 * 120.12300 * 359.71971 * 22 21 20 43 43 H 1.08002 * 119.73294 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.67172 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.10946 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 1 5.9154 -2.0469 0.8391 13 7 6.0402 -2.0517 -1.2580 14 6 6.0539 -4.0520 0.1217 15 8 6.4273 -4.6515 -0.8643 16 7 6.0884 -4.6516 1.3282 17 6 6.5773 -6.0273 1.4488 18 6 6.5116 -6.4655 2.9133 19 6 7.0140 -7.8809 3.0372 20 6 8.3033 -8.2327 3.1638 21 6 8.3414 -9.6943 3.2529 22 6 9.3670 -10.6316 3.3927 23 6 9.0661 -11.9632 3.4467 24 6 7.7485 -12.3924 3.3629 25 6 6.7213 -11.4849 3.2251 26 6 7.0047 -10.1240 3.1684 27 7 6.2235 -8.9977 3.0378 28 1 5.2568 -8.9963 2.9579 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 3.6579 -3.1506 -0.8907 33 1 3.6586 -3.1502 0.8892 34 1 5.7161 -2.5809 -2.0536 35 1 5.7707 -1.0824 -1.3344 36 1 5.7895 -4.1723 2.1169 37 1 7.6087 -6.0783 1.0999 38 1 5.9561 -6.6880 0.8441 39 1 5.4801 -6.4146 3.2618 40 1 7.1326 -5.8049 3.5183 41 1 9.1514 -7.5648 3.1939 42 1 10.3947 -10.3054 3.4538 43 1 9.8597 -12.6878 3.5544 44 1 7.5264 -13.4484 3.4067 45 1 5.6995 -11.8287 3.1612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578542803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:14 Heat of formation + Delta-G solvation = -23.618449 kcal Electronic energy + Delta-G solvation = -24412.674251 eV Core-core repulsion = 20814.334588 eV Total energy + Delta-G solvation = -3598.339663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23200 -40.91030 -38.16157 -37.21752 -36.27840 -34.80565 -33.17061 -32.36127 -32.07065 -30.23121 -29.16252 -28.06844 -25.83335 -24.16366 -23.03707 -22.35767 -22.19356 -21.43786 -20.88416 -19.14149 -18.63113 -18.24481 -17.38723 -17.16160 -16.40484 -16.30023 -16.10817 -15.89432 -15.61199 -15.34328 -15.27464 -15.00556 -14.73615 -14.63532 -14.46211 -14.20895 -13.91290 -13.58149 -13.34120 -13.20998 -13.05706 -12.73152 -12.63157 -12.35906 -12.24098 -12.06658 -11.90917 -11.75344 -11.65824 -11.40104 -10.82603 -10.76541 -10.64991 -10.13729 -9.64922 -9.10747 -8.63352 -8.29770 -6.35237 0.18204 0.71238 1.39268 1.40242 1.51694 1.61248 1.64532 2.05550 2.29598 2.36452 3.00339 3.06063 3.62226 3.73842 3.80733 3.89792 3.98562 4.02039 4.11922 4.19624 4.21018 4.28825 4.45545 4.50208 4.56766 4.59159 4.68406 4.72871 4.74584 4.95992 4.97913 5.05368 5.08848 5.18461 5.36702 5.40396 5.48411 5.56481 5.63121 5.71340 5.82694 5.86050 6.07424 6.25226 6.25269 6.49070 6.54133 6.64211 6.73531 7.24445 7.29662 8.86887 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.001962 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.446631 B =14268.758928 C =14819.919697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.235 1.235 7 C -0.534 4.534 8 H 0.026 0.974 9 C -0.007 4.007 10 C -0.119 4.119 11 C 0.081 3.919 12 H 0.124 0.876 13 N -0.832 5.832 14 C 0.524 3.476 15 O -0.575 6.575 16 N -0.717 5.717 17 C 0.130 3.870 18 C -0.058 4.058 19 C 0.085 3.915 20 C -0.213 4.213 21 C -0.137 4.137 22 C -0.088 4.088 23 C -0.153 4.153 24 C -0.106 4.106 25 C -0.142 4.142 26 C 0.076 3.924 27 N -0.589 5.589 28 H 0.423 0.577 29 H 0.266 0.734 30 H 0.034 0.966 31 H 0.022 0.978 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.344 0.656 35 H 0.355 0.645 36 H 0.418 0.582 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.133 0.867 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.839 -19.204 11.233 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.158 1.158 7 C -0.572 4.572 8 H 0.045 0.955 9 C -0.044 4.044 10 C -0.159 4.159 11 C -0.034 4.034 12 H 0.142 0.858 13 N -0.364 5.364 14 C 0.310 3.690 15 O -0.454 6.454 16 N -0.371 5.371 17 C 0.006 3.994 18 C -0.096 4.096 19 C -0.023 4.023 20 C -0.238 4.238 21 C -0.141 4.141 22 C -0.106 4.106 23 C -0.172 4.172 24 C -0.125 4.125 25 C -0.162 4.162 26 C -0.031 4.031 27 N -0.193 5.193 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.170 0.830 36 H 0.255 0.745 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.175 0.825 42 H 0.151 0.849 43 H 0.161 0.839 44 H 0.166 0.834 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.572 -19.659 10.808 29.771 hybrid contribution -2.107 0.895 -0.220 2.299 sum 17.465 -18.764 10.588 27.735 Atomic orbital electron populations 1.70082 1.08548 1.28205 1.52517 1.26091 0.95627 1.03811 0.94025 0.85607 0.79836 0.77732 0.79144 1.19496 1.21491 1.15751 1.21452 0.92278 0.92862 1.50648 0.95542 1.19513 0.93718 0.93911 0.97294 1.22028 0.93517 0.98683 1.01636 1.21462 0.93249 0.92329 0.96392 0.85850 1.58750 1.66561 1.07671 1.03394 1.20805 0.76546 0.88645 0.82992 1.90646 1.49225 1.66896 1.38649 1.45813 1.66176 1.15388 1.09690 1.21214 0.99567 0.81951 0.96662 1.20415 1.04370 0.89481 0.95363 1.20194 0.90529 0.88484 1.03133 1.21756 0.96287 0.92937 1.12828 1.19590 0.93129 0.94304 1.07105 1.20576 0.98512 0.92597 0.98927 1.20978 0.97357 0.95642 1.03230 1.21181 0.92160 1.00081 0.99059 1.20366 1.00897 0.88953 1.06011 1.18550 0.91007 0.89082 1.04475 1.41819 1.09424 1.03756 1.64334 0.73792 0.92567 0.94743 0.95951 0.94237 0.91367 0.84297 0.82994 0.74489 0.91857 0.93289 0.88270 0.86213 0.82489 0.84892 0.83926 0.83438 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 2 C 0.00 0.06 5.47 84.66 0.46 0.53 16 3 Si 0.95 41.85 27.47 68.60 1.88 43.73 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.23 -9.08 6.54 99.48 0.65 -8.43 16 7 C -0.53 -29.40 9.66 25.60 0.25 -29.16 16 8 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 9 C -0.01 -0.29 3.81 29.85 0.11 -0.17 16 10 C -0.12 -4.16 4.78 30.60 0.15 -4.01 16 11 C 0.08 2.31 3.21 44.17 0.14 2.45 16 12 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 13 N -0.83 -24.68 8.94 -171.81 -1.54 -26.22 16 14 C 0.52 15.27 7.08 87.66 0.62 15.89 16 15 O -0.58 -21.43 16.25 -3.04 -0.05 -21.48 16 16 N -0.72 -14.63 5.56 -463.06 -2.57 -17.20 16 17 C 0.13 2.45 5.66 86.38 0.49 2.94 16 18 C -0.06 -0.70 5.84 29.85 0.17 -0.52 16 19 C 0.09 1.41 6.34 40.87 0.26 1.67 16 20 C -0.21 -3.97 10.95 23.51 0.26 -3.72 16 21 C -0.14 -2.84 6.37 -20.20 -0.13 -2.97 16 22 C -0.09 -1.55 10.05 22.23 0.22 -1.33 16 23 C -0.15 -2.27 9.97 22.03 0.22 -2.05 16 24 C -0.11 -1.52 10.01 22.30 0.22 -1.30 16 25 C -0.14 -2.33 10.08 22.37 0.23 -2.11 16 26 C 0.08 1.50 7.28 39.03 0.28 1.78 16 27 N -0.59 -9.77 6.07 -175.91 -1.07 -10.84 16 28 H 0.42 5.08 8.96 -92.71 -0.83 4.25 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 31 H 0.02 0.89 6.30 -2.39 -0.02 0.88 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.34 10.87 8.58 -89.69 -0.77 10.10 16 35 H 0.35 9.85 7.55 -89.69 -0.68 9.17 16 36 H 0.42 5.98 8.47 -92.70 -0.79 5.19 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 42 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 44 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -75.99 376.18 -1.16 -77.15 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -2.08 Total: 35.26 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.96 Total: -22.09 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -4.88 Total: -112.57 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.73 kcal Total: -75.99 -1.16 -77.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578542803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.531 kcal (2) G-P(sol) polarization free energy of solvation -75.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds