Wall clock time and date at job start Tue Mar 31 2020 12:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46959 * 180.02562 * 18 17 16 20 20 C 1.34238 * 125.03731 * 84.99909 * 19 18 17 21 21 C 1.46485 * 106.99519 * 179.97438 * 20 19 18 22 22 C 1.39634 * 134.02539 * 180.02562 * 21 20 19 23 23 C 1.36628 * 119.75987 * 179.97438 * 22 21 20 24 24 C 1.38830 * 120.53082 * 0.02562 * 23 22 21 25 25 C 1.37753 * 120.66509 * 359.97438 * 24 23 22 26 26 C 1.39124 * 119.78007 * 359.96285 * 25 24 23 27 27 N 1.36837 * 125.03180 * 264.69896 * 19 18 17 28 28 H 0.96994 * 125.06360 * 359.97438 * 27 19 18 29 29 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 31 31 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 34 34 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 35 35 H 1.00902 * 110.99515 * 183.95384 * 13 11 10 36 36 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 37 37 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 38 38 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 39 39 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 40 40 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 41 41 H 1.07996 * 126.49929 * 359.97438 * 20 19 18 42 42 H 1.08000 * 120.12284 * 359.97438 * 22 21 20 43 43 H 1.08006 * 119.73509 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.66775 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.11102 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 6 5.2914 -8.8753 3.0388 20 6 6.6171 -8.7815 2.8495 21 6 7.1764 -10.1175 3.0688 22 6 8.4667 -10.6492 3.0205 23 6 8.6640 -11.9752 3.2841 24 6 7.5917 -12.7988 3.5993 25 6 6.3107 -12.2950 3.6525 26 6 6.0867 -10.9474 3.3889 27 7 4.9568 -10.1610 3.3665 28 1 4.0575 -10.4722 3.5540 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8902 32 1 2.8718 -3.6044 0.8905 33 1 2.8718 -3.6044 -0.8895 34 1 1.3488 -5.1023 -2.0514 35 1 0.1643 -5.9545 -1.2535 36 1 2.6917 -5.9607 2.1187 37 1 3.4323 -8.4894 1.1021 38 1 4.7866 -7.3631 0.8454 39 1 4.7887 -6.8137 3.2632 40 1 3.4345 -7.9398 3.5204 41 1 7.1668 -7.8902 2.5855 42 1 9.3056 -10.0147 2.7756 43 1 9.6621 -12.3862 3.2463 44 1 7.7636 -13.8450 3.8048 45 1 5.4831 -12.9438 3.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578542804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:18 Heat of formation + Delta-G solvation = -1.857756 kcal Electronic energy + Delta-G solvation = -24355.741926 eV Core-core repulsion = 20758.345877 eV Total energy + Delta-G solvation = -3597.396049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61814 -39.79725 -37.53412 -35.68196 -35.05274 -32.81336 -32.47422 -31.64052 -30.11108 -29.61837 -28.19536 -26.38286 -24.45629 -22.99877 -22.37090 -21.73049 -20.82552 -20.47238 -19.76861 -18.01866 -17.14959 -16.69446 -16.43857 -16.06608 -15.60501 -15.37926 -15.18526 -14.82410 -14.49098 -14.39221 -14.14820 -13.96246 -13.71264 -13.45337 -13.26911 -12.72356 -12.54253 -12.34154 -12.10926 -12.00392 -11.74715 -11.66858 -11.50745 -11.17309 -10.92301 -10.69720 -10.54151 -10.16862 -10.01816 -9.82011 -9.39420 -9.14355 -8.99681 -8.48790 -8.37044 -8.22783 -8.00596 -5.95225 -3.97310 0.79954 1.33617 2.32143 2.70333 2.74481 3.23634 3.33009 3.40778 3.44576 3.63136 4.29511 4.43839 4.49146 4.60124 4.61394 4.73171 4.83163 4.87279 5.05474 5.09825 5.12234 5.15429 5.29090 5.40384 5.42469 5.51122 5.62626 5.68868 5.71658 5.76596 5.81053 6.15166 6.31344 6.34123 6.42232 6.43781 6.49332 6.63513 6.85448 7.06818 7.18006 7.33723 7.54863 7.74743 7.77659 7.94742 8.11589 8.27088 8.47096 9.10965 9.66025 11.15660 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.001953 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.090013 B =14330.805266 C =15083.205905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.030 3.970 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.483 3.517 15 O -0.553 6.553 16 N -0.733 5.733 17 C 0.124 3.876 18 C -0.071 4.071 19 C 0.087 3.913 20 C -0.193 4.193 21 C -0.108 4.108 22 C -0.070 4.070 23 C -0.149 4.149 24 C -0.101 4.101 25 C -0.131 4.131 26 C 0.097 3.903 27 N -0.592 5.592 28 H 0.414 0.586 29 H 0.259 0.741 30 H 0.035 0.965 31 H 0.013 0.987 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.333 0.667 36 H 0.404 0.596 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.148 0.852 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.658 -24.881 10.234 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.430 6.430 16 N -0.386 5.386 17 C -0.001 4.001 18 C -0.110 4.110 19 C -0.021 4.021 20 C -0.218 4.218 21 C -0.112 4.112 22 C -0.089 4.089 23 C -0.168 4.168 24 C -0.120 4.120 25 C -0.152 4.152 26 C -0.010 4.010 27 N -0.195 5.195 28 H 0.251 0.749 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.238 0.762 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.166 0.834 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.254 -24.519 9.723 28.677 hybrid contribution 0.490 0.017 0.421 0.646 sum 11.744 -24.502 10.144 29.003 Atomic orbital electron populations 1.69987 1.05947 1.26303 1.50930 1.24998 0.94813 0.99085 0.95490 0.86591 0.80112 0.84077 0.77527 1.19846 1.21053 1.21124 1.21318 0.92952 0.91304 1.50454 0.92909 1.19025 0.93577 0.89855 0.98223 1.21663 0.98852 0.92132 1.00730 1.21849 0.93503 0.93251 0.95112 0.88419 1.59000 1.26926 1.44242 1.03301 1.22797 0.82186 0.85708 0.82419 1.90655 1.60996 1.54226 1.37121 1.46156 1.46878 1.34964 1.10621 1.21244 0.93560 0.90293 0.94982 1.20478 0.97644 0.95773 0.97093 1.19988 0.94800 0.84822 1.02539 1.21532 0.92435 0.96681 1.11173 1.19223 0.93003 0.93580 1.05433 1.20316 0.94978 0.95142 0.98449 1.20640 0.98948 0.93757 1.03465 1.20803 0.91712 0.99587 0.99903 1.20032 0.97784 0.91545 1.05795 1.18233 0.86417 0.92821 1.03511 1.41743 1.08478 1.07366 1.61890 0.74921 0.93161 0.94656 0.96864 0.92773 0.92819 0.83785 0.85490 0.76171 0.91856 0.90934 0.88110 0.90018 0.83390 0.85996 0.86075 0.85833 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.76 4.86 -27.89 -0.14 0.63 16 10 C -0.10 -1.88 4.78 -26.73 -0.13 -2.00 16 11 C 0.08 1.27 3.15 -68.86 -0.22 1.06 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 N -0.81 -13.39 8.44 -5.65 -0.05 -13.44 16 14 C 0.48 7.31 7.07 -10.98 -0.08 7.23 16 15 O -0.55 -10.09 16.25 5.56 0.09 -10.00 16 16 N -0.73 -8.26 5.56 -60.29 -0.33 -8.60 16 17 C 0.12 1.24 5.66 -4.05 -0.02 1.22 16 18 C -0.07 -0.51 5.84 -27.88 -0.16 -0.67 16 19 C 0.09 0.75 6.34 -81.77 -0.52 0.24 16 20 C -0.19 -1.90 10.95 -37.67 -0.41 -2.31 16 21 C -0.11 -1.13 6.37 -105.14 -0.67 -1.80 16 22 C -0.07 -0.64 10.05 -39.64 -0.40 -1.04 16 23 C -0.15 -1.19 9.97 -39.94 -0.40 -1.58 16 24 C -0.10 -0.77 10.01 -39.54 -0.40 -1.17 16 25 C -0.13 -1.08 10.08 -39.43 -0.40 -1.48 16 26 C 0.10 0.95 7.28 -83.99 -0.61 0.33 16 27 N -0.59 -4.83 6.07 -6.95 -0.04 -4.87 16 28 H 0.41 2.32 8.96 -40.82 -0.37 1.95 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.04 0.97 7.75 -51.93 -0.40 0.56 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.35 5.91 8.58 -39.29 -0.34 5.57 16 35 H 0.33 4.79 9.06 -39.29 -0.36 4.43 16 36 H 0.40 3.63 8.47 -40.82 -0.35 3.28 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 44 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -34.57 381.74 -10.67 -45.24 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.85 Total: 10.05 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -4.96 Total: -14.74 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.31 Total: -52.89 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.57 -10.67 -45.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578542804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.379 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds