Wall clock time and date at job start Tue Mar 31 2020 12:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46959 * 180.02562 * 18 17 16 20 20 C 1.34238 * 125.03731 * 84.99909 * 19 18 17 21 21 C 1.46485 * 106.99519 * 179.97438 * 20 19 18 22 22 C 1.39634 * 134.02539 * 180.02562 * 21 20 19 23 23 C 1.36628 * 119.75987 * 179.97438 * 22 21 20 24 24 C 1.38830 * 120.53082 * 0.02562 * 23 22 21 25 25 C 1.37753 * 120.66509 * 359.97438 * 24 23 22 26 26 C 1.39124 * 119.78007 * 359.96285 * 25 24 23 27 27 N 1.36837 * 125.03180 * 264.69896 * 19 18 17 28 28 H 0.96994 * 125.06360 * 359.97438 * 27 19 18 29 29 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 31 31 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 34 34 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 35 35 H 1.00902 * 110.99515 * 183.95384 * 13 11 10 36 36 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 37 37 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 38 38 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 39 39 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 40 40 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 41 41 H 1.07996 * 126.49929 * 359.97438 * 20 19 18 42 42 H 1.08000 * 120.12284 * 359.97438 * 22 21 20 43 43 H 1.08006 * 119.73509 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.66775 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.11102 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 6 5.2914 -8.8753 3.0388 20 6 6.6171 -8.7815 2.8495 21 6 7.1764 -10.1175 3.0688 22 6 8.4667 -10.6492 3.0205 23 6 8.6640 -11.9752 3.2841 24 6 7.5917 -12.7988 3.5993 25 6 6.3107 -12.2950 3.6525 26 6 6.0867 -10.9474 3.3889 27 7 4.9568 -10.1610 3.3665 28 1 4.0575 -10.4722 3.5540 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8902 32 1 2.8718 -3.6044 0.8905 33 1 2.8718 -3.6044 -0.8895 34 1 1.3488 -5.1023 -2.0514 35 1 0.1643 -5.9545 -1.2535 36 1 2.6917 -5.9607 2.1187 37 1 3.4323 -8.4894 1.1021 38 1 4.7866 -7.3631 0.8454 39 1 4.7887 -6.8137 3.2632 40 1 3.4345 -7.9398 3.5204 41 1 7.1668 -7.8902 2.5855 42 1 9.3056 -10.0147 2.7756 43 1 9.6621 -12.3862 3.2463 44 1 7.7636 -13.8450 3.8048 45 1 5.4831 -12.9438 3.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578542804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:17 Heat of formation + Delta-G solvation = -25.857356 kcal Electronic energy + Delta-G solvation = -24356.782627 eV Core-core repulsion = 20758.345877 eV Total energy + Delta-G solvation = -3598.436750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.24903 -41.00843 -38.17369 -36.92140 -36.31481 -34.79626 -33.18611 -32.37505 -31.90231 -30.24545 -29.05514 -27.89968 -25.80968 -24.20560 -23.05676 -22.37494 -22.30584 -21.43340 -20.90053 -18.79053 -18.51314 -17.99162 -17.47162 -17.27435 -16.81062 -16.44978 -16.28278 -15.95821 -15.59252 -15.29237 -15.06101 -14.90810 -14.79102 -14.55956 -14.27078 -13.95947 -13.79830 -13.42643 -13.33900 -13.23446 -12.81634 -12.74048 -12.50052 -12.37427 -12.28274 -12.19313 -11.77160 -11.75020 -11.63836 -11.23316 -10.98153 -10.67425 -10.48022 -10.17537 -9.62666 -9.11656 -8.64882 -8.12791 -6.22552 0.16794 0.69925 1.42161 1.43371 1.50796 1.55857 1.62975 2.05140 2.30586 2.45747 2.99090 3.20490 3.56656 3.66028 3.81683 3.88666 3.98449 3.99817 4.14004 4.18665 4.27364 4.34537 4.43492 4.47970 4.55346 4.66692 4.70934 4.80984 4.92748 4.98348 5.03923 5.07332 5.17369 5.27904 5.36326 5.55317 5.59505 5.70339 5.80606 5.83663 5.87069 6.00831 6.11251 6.23528 6.32261 6.44843 6.54562 6.64479 6.96724 7.15098 7.45567 8.98467 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.001953 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.090013 B =14330.805266 C =15083.205905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.001 3.999 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.083 4.083 11 C 0.086 3.914 12 H 0.114 0.886 13 N -0.820 5.820 14 C 0.488 3.512 15 O -0.585 6.585 16 N -0.714 5.714 17 C 0.128 3.872 18 C -0.058 4.058 19 C 0.088 3.912 20 C -0.218 4.218 21 C -0.138 4.138 22 C -0.090 4.090 23 C -0.153 4.153 24 C -0.105 4.105 25 C -0.139 4.139 26 C 0.078 3.922 27 N -0.586 5.586 28 H 0.425 0.575 29 H 0.261 0.739 30 H 0.005 0.995 31 H -0.003 1.003 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.344 0.656 35 H 0.346 0.654 36 H 0.418 0.582 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -25.637 11.631 30.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.121 4.121 11 C -0.030 4.030 12 H 0.132 0.868 13 N -0.349 5.349 14 C 0.274 3.726 15 O -0.466 6.466 16 N -0.367 5.367 17 C 0.004 3.996 18 C -0.096 4.096 19 C -0.021 4.021 20 C -0.243 4.243 21 C -0.142 4.142 22 C -0.109 4.109 23 C -0.172 4.172 24 C -0.124 4.124 25 C -0.159 4.159 26 C -0.029 4.029 27 N -0.190 5.190 28 H 0.264 0.736 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.015 0.985 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.062 -25.296 11.170 30.168 hybrid contribution 0.252 0.184 0.000 0.312 sum 12.314 -25.111 11.170 30.116 Atomic orbital electron populations 1.70112 1.07584 1.27379 1.51906 1.25893 0.95700 1.02990 0.95091 0.85496 0.79100 0.79373 0.77638 1.18805 1.20835 1.20314 1.21775 0.93388 0.92751 1.50076 0.92597 1.18844 0.93929 0.91329 0.95847 1.21401 0.97723 0.92053 1.00913 1.21659 0.93743 0.92000 0.95586 0.86802 1.58983 1.27270 1.45262 1.03383 1.22398 0.81939 0.85266 0.83043 1.90649 1.62058 1.55356 1.38505 1.45985 1.45888 1.34853 1.09948 1.21238 0.92328 0.89242 0.96826 1.20412 0.98310 0.95754 0.95171 1.20150 0.94727 0.85349 1.01895 1.21754 0.93314 0.96922 1.12298 1.19577 0.93970 0.94228 1.06445 1.20571 0.95020 0.96067 0.99199 1.20975 1.00236 0.93404 1.02554 1.21191 0.91382 1.00856 0.99015 1.20368 0.98844 0.91308 1.05427 1.18531 0.86735 0.93547 1.04115 1.41752 1.08819 1.07056 1.61413 0.73575 0.92990 0.97697 0.98502 0.91039 0.94126 0.84221 0.84063 0.74464 0.92507 0.92631 0.86897 0.87612 0.83058 0.85225 0.84012 0.83290 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.37 9.11 25.60 0.23 -30.13 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.04 1.92 4.86 29.85 0.15 2.06 16 10 C -0.08 -3.20 4.78 30.59 0.15 -3.06 16 11 C 0.09 2.70 3.15 44.17 0.14 2.84 16 12 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 13 N -0.82 -27.16 8.44 -171.80 -1.45 -28.61 16 14 C 0.49 14.17 7.07 87.66 0.62 14.79 16 15 O -0.59 -21.07 16.25 -3.01 -0.05 -21.12 16 16 N -0.71 -14.64 5.56 -463.05 -2.57 -17.21 16 17 C 0.13 2.37 5.66 86.38 0.49 2.86 16 18 C -0.06 -0.69 5.84 29.85 0.17 -0.52 16 19 C 0.09 1.43 6.34 40.87 0.26 1.69 16 20 C -0.22 -4.26 10.95 23.51 0.26 -4.00 16 21 C -0.14 -2.89 6.37 -20.20 -0.13 -3.02 16 22 C -0.09 -1.64 10.05 22.23 0.22 -1.42 16 23 C -0.15 -2.27 9.97 22.03 0.22 -2.05 16 24 C -0.11 -1.43 10.01 22.30 0.22 -1.21 16 25 C -0.14 -2.11 10.08 22.37 0.23 -1.89 16 26 C 0.08 1.46 7.28 39.03 0.28 1.75 16 27 N -0.59 -8.88 6.07 -175.91 -1.07 -9.95 16 28 H 0.43 4.06 8.96 -92.71 -0.83 3.23 16 29 H 0.26 14.86 8.31 -92.71 -0.77 14.08 16 30 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 31 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.34 11.83 8.58 -89.69 -0.77 11.06 16 35 H 0.35 9.78 9.06 -89.69 -0.81 8.97 16 36 H 0.42 6.29 8.47 -92.71 -0.79 5.51 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 42 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -75.12 381.74 -1.02 -76.14 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -2.16 Total: 31.26 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 3.97 Total: -20.78 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.81 Total: -111.67 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.05 Total: -21.12 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -75.12 -1.02 -76.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578542804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.285 kcal (2) G-P(sol) polarization free energy of solvation -75.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds