Wall clock time and date at job start Tue Mar 31 2020 12:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00110 * 2 1 4 4 H 1.48503 * 109.47213 * 240.00113 * 3 2 1 5 5 H 1.48500 * 109.46990 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47122 * 119.99993 * 3 2 1 7 7 C 1.37882 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99683 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46751 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47697 * 54.99787 * 10 9 7 12 12 N 1.46901 * 109.47114 * 294.99690 * 10 9 7 13 13 C 1.46904 * 110.99885 * 155.00130 * 12 10 9 14 14 C 1.53001 * 109.46850 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47268 * 305.00162 * 14 13 12 16 16 O 1.42904 * 109.47101 * 65.00060 * 14 13 12 17 17 C 1.53004 * 109.47053 * 184.99851 * 14 13 12 18 18 N 1.46496 * 109.47079 * 175.00203 * 17 14 13 19 19 C 1.34947 * 126.03820 * 125.00094 * 18 17 14 20 20 C 1.35319 * 107.74559 * 179.97438 * 19 18 17 21 21 C 1.39866 * 107.92097 * 0.02562 * 20 19 18 22 22 N 1.30842 * 108.20390 * 359.73836 * 21 20 19 23 23 C 1.50703 * 109.47337 * 174.99484 * 10 9 7 24 24 C 1.38235 * 120.00292 * 260.00106 * 23 10 9 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 10 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 79.97399 * 23 10 9 29 29 H 0.97001 * 119.99717 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47518 * 60.00239 * 9 7 2 31 31 H 1.09003 * 109.47035 * 299.99390 * 9 7 2 32 32 H 1.00896 * 111.00042 * 278.95523 * 12 10 9 33 33 H 1.09003 * 109.47260 * 300.00028 * 13 12 10 34 34 H 1.08998 * 109.47292 * 59.99829 * 13 12 10 35 35 H 0.96700 * 113.99843 * 60.00281 * 16 14 13 36 36 H 1.08994 * 109.47022 * 295.00289 * 17 14 13 37 37 H 1.08996 * 109.46992 * 55.00057 * 17 14 13 38 38 H 1.07993 * 126.12542 * 0.02562 * 19 18 17 39 39 H 1.07995 * 126.03847 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.89571 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.99730 * 359.97438 * 24 23 10 42 42 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 44 44 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00455 * 0.02562 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9288 -3.5556 0.8409 12 7 3.0093 -3.6534 -1.2561 13 6 4.3103 -4.3137 -1.0848 14 6 5.0749 -4.2855 -2.4098 15 1 4.4613 -4.7307 -3.1929 16 8 5.3800 -2.9327 -2.7549 17 6 6.3742 -5.0806 -2.2659 18 7 7.0478 -5.1544 -3.5647 19 6 8.3162 -4.7735 -3.8239 20 6 8.5556 -5.0027 -5.1359 21 6 7.3936 -5.5415 -5.6978 22 7 6.4908 -5.6379 -4.7557 23 6 1.4958 -4.9638 0.1213 24 6 1.4091 -5.5986 1.3462 25 6 0.7212 -6.7923 1.4589 26 6 0.1192 -7.3507 0.3469 27 6 0.2047 -6.7152 -0.8777 28 6 0.8945 -5.5226 -0.9909 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8881 32 1 2.4825 -4.0806 -2.0032 33 1 4.8859 -3.7900 -0.3215 34 1 4.1552 -5.3478 -0.7772 35 1 5.9248 -2.4734 -2.1013 36 1 7.0257 -4.5848 -1.5463 37 1 6.1470 -6.0877 -1.9166 38 1 9.0152 -4.3606 -3.1118 39 1 9.4803 -4.8038 -5.6572 40 1 7.2652 -5.8318 -6.7301 41 1 1.8789 -5.1619 2.2152 42 1 0.6538 -7.2885 2.4158 43 1 -0.4145 -8.2856 0.4339 44 1 -0.2653 -7.1517 -1.7467 45 1 0.9622 -5.0267 -1.9479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578564295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:36 Heat of formation + Delta-G solvation = 56.375141 kcal Electronic energy + Delta-G solvation = -25740.633780 eV Core-core repulsion = 22145.762899 eV Total energy + Delta-G solvation = -3594.870881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17377 -39.32409 -37.83933 -35.64554 -33.24965 -32.72169 -31.34529 -30.63613 -30.17600 -29.12043 -28.19902 -25.34009 -23.97497 -22.52215 -21.88855 -21.72533 -21.06763 -20.69123 -19.62706 -17.56936 -17.09043 -16.17251 -16.04960 -15.96922 -15.11797 -14.98214 -14.86977 -14.48440 -14.21622 -14.14203 -13.78084 -13.53510 -13.30351 -13.04722 -12.89664 -12.73573 -12.46673 -12.23425 -12.05118 -11.95490 -11.25188 -11.12430 -11.01908 -10.88836 -10.67603 -10.63879 -10.54096 -10.21422 -10.07278 -9.62884 -9.39436 -9.03298 -8.66176 -8.62010 -8.27227 -8.23884 -7.73708 -5.87563 -3.85918 1.65876 1.66631 1.85214 2.41014 2.80664 3.41009 3.45560 3.48799 4.05282 4.15432 4.33506 4.56992 4.65823 4.72252 4.94055 5.03102 5.07079 5.15130 5.16290 5.20516 5.25342 5.34948 5.42231 5.49351 5.52099 5.67613 5.73370 5.80592 5.82941 5.91950 6.00199 6.12274 6.27339 6.33367 6.58301 6.72013 6.74006 6.76871 6.91519 6.94387 7.28776 7.45441 7.62304 7.64540 7.80351 7.93697 7.98613 8.12559 8.55322 9.17962 9.75204 11.24345 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008257 B = 0.004293 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.227786 B = 6520.400324 C = 9297.462638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.489 4.489 8 H 0.058 0.942 9 C 0.043 3.957 10 C 0.130 3.870 11 H 0.074 0.926 12 N -0.647 5.647 13 C 0.030 3.970 14 C 0.103 3.897 15 H 0.107 0.893 16 O -0.535 6.535 17 C 0.099 3.901 18 N -0.360 5.360 19 C 0.054 3.946 20 C -0.279 4.279 21 C 0.040 3.960 22 N -0.291 5.291 23 C -0.092 4.092 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.137 4.137 27 C -0.118 4.118 28 C -0.119 4.119 29 H 0.258 0.742 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.334 0.666 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.370 0.630 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.170 0.830 39 H 0.144 0.856 40 H 0.180 0.820 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.008 -14.964 -2.932 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.527 4.527 8 H 0.077 0.923 9 C 0.006 3.994 10 C 0.020 3.980 11 H 0.092 0.908 12 N -0.278 5.278 13 C -0.101 4.101 14 C 0.042 3.958 15 H 0.125 0.875 16 O -0.339 6.339 17 C -0.023 4.023 18 N -0.141 5.141 19 C -0.092 4.092 20 C -0.309 4.309 21 C -0.146 4.146 22 N -0.112 5.112 23 C -0.094 4.094 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.155 4.155 27 C -0.136 4.136 28 C -0.138 4.138 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.155 0.845 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.216 0.784 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.187 0.813 39 H 0.162 0.838 40 H 0.197 0.803 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.500 -14.681 -2.940 18.879 hybrid contribution 1.264 0.341 0.413 1.373 sum 12.764 -14.340 -2.527 19.364 Atomic orbital electron populations 1.69959 1.05998 1.26390 1.51981 1.24989 0.94759 0.99043 0.95996 0.86678 0.79515 0.83458 0.78394 1.20265 1.21662 1.20628 1.21030 0.93051 0.90053 1.48603 0.92336 1.19079 0.92721 0.90385 0.97254 1.21000 0.94906 0.90950 0.91111 0.90818 1.60557 1.02946 1.57382 1.06886 1.22602 0.93824 0.97179 0.96466 1.22181 0.92450 0.83164 0.97984 0.87499 1.86725 1.74279 1.23624 1.49267 1.22552 0.96347 1.02997 0.80417 1.48541 1.09455 1.47822 1.08328 1.22528 0.87688 1.00857 0.98155 1.21458 1.01262 1.13983 0.94177 1.23845 0.91675 0.99871 0.99189 1.77338 1.22360 1.20816 0.90719 1.21191 0.97762 0.97185 0.93264 1.21077 0.99999 0.95239 0.97328 1.21082 0.98341 0.96294 0.98229 1.21019 1.01081 1.00167 0.93217 1.21073 0.99323 0.95796 0.97448 1.20985 0.98219 0.95757 0.98822 0.93236 0.96274 0.96329 0.84537 0.90687 0.95163 0.78352 0.88274 0.89046 0.81255 0.83812 0.80286 0.86295 0.86653 0.86766 0.86557 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.49 -13.51 8.84 -34.44 -0.30 -13.82 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.04 1.08 4.63 -27.88 -0.13 0.95 16 10 C 0.13 2.51 2.17 -68.86 -0.15 2.36 16 11 H 0.07 1.42 7.66 -51.93 -0.40 1.02 16 12 N -0.65 -11.46 5.90 -107.94 -0.64 -12.10 16 13 C 0.03 0.41 5.12 -3.82 -0.02 0.39 16 14 C 0.10 1.32 3.27 -26.73 -0.09 1.23 16 15 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 16 O -0.54 -8.11 13.23 -35.23 -0.47 -8.57 16 17 C 0.10 0.98 6.15 -4.04 -0.02 0.95 16 18 N -0.36 -4.28 3.62 -61.37 -0.22 -4.50 16 19 C 0.05 0.55 11.45 -17.22 -0.20 0.35 16 20 C -0.28 -2.85 10.80 -40.01 -0.43 -3.28 16 21 C 0.04 0.46 12.03 -17.36 -0.21 0.25 16 22 N -0.29 -4.05 12.35 30.62 0.38 -3.67 16 23 C -0.09 -1.58 4.71 -104.62 -0.49 -2.07 16 24 C -0.12 -1.84 9.67 -39.59 -0.38 -2.22 16 25 C -0.12 -1.67 10.05 -39.59 -0.40 -2.06 16 26 C -0.14 -1.82 10.05 -39.58 -0.40 -2.22 16 27 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 28 C -0.12 -1.92 9.12 -39.58 -0.36 -2.28 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.33 5.83 6.35 -39.29 -0.25 5.58 16 33 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 34 H 0.03 0.38 8.00 -51.93 -0.42 -0.03 16 35 H 0.37 4.38 9.05 45.56 0.41 4.79 16 36 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.12 1.72 8.04 -52.49 -0.42 1.30 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.12 1.90 6.51 -52.49 -0.34 1.56 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -34.66 381.40 -9.58 -44.24 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.02 Total: 10.62 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -4.08 Total: -22.15 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.26 Total: -46.92 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.47 Total: -8.57 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.66 -9.58 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578564295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.615 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds