Wall clock time and date at job start Tue Mar 31 2020 12:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48499 * 109.47244 * 240.00734 * 3 2 1 5 5 H 1.48500 * 109.46813 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47179 * 120.00072 * 3 2 1 7 7 C 1.37878 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47160 * 175.53923 * 9 7 2 11 11 H 1.09002 * 109.47132 * 305.72109 * 10 9 7 12 12 N 1.46904 * 109.47063 * 185.72141 * 10 9 7 13 13 C 1.46892 * 110.99982 * 86.56782 * 12 10 9 14 14 C 1.52998 * 109.47100 * 174.83814 * 13 12 10 15 15 H 1.08994 * 109.47618 * 60.00086 * 14 13 12 16 16 O 1.42907 * 109.46848 * 299.99793 * 14 13 12 17 17 C 1.53005 * 109.47039 * 180.02562 * 14 13 12 18 18 N 1.46499 * 109.46896 * 184.99772 * 17 14 13 19 19 C 1.34955 * 126.04029 * 124.71197 * 18 17 14 20 20 C 1.35313 * 107.74652 * 179.83800 * 19 18 17 21 21 C 1.39862 * 107.92079 * 0.42577 * 20 19 18 22 22 N 1.30839 * 108.20787 * 359.73694 * 21 20 19 23 23 C 1.50697 * 109.46747 * 65.72131 * 10 9 7 24 24 C 1.38234 * 119.99945 * 79.72765 * 23 10 9 25 25 C 1.38241 * 119.99847 * 179.78535 * 24 23 10 26 26 C 1.38238 * 119.99978 * 0.43938 * 25 24 23 27 27 C 1.38243 * 119.99856 * 359.81633 * 26 25 24 28 28 C 1.38232 * 119.99834 * 359.97310 * 27 26 25 29 29 H 0.96999 * 120.00575 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46778 * 55.54415 * 9 7 2 31 31 H 1.08997 * 109.47495 * 295.54322 * 9 7 2 32 32 H 1.00897 * 110.99786 * 322.61152 * 12 10 9 33 33 H 1.09004 * 109.47316 * 54.83525 * 13 12 10 34 34 H 1.09005 * 109.47429 * 294.83553 * 13 12 10 35 35 H 0.96700 * 113.99715 * 299.99506 * 16 14 13 36 36 H 1.09003 * 109.46930 * 304.99544 * 17 14 13 37 37 H 1.08995 * 109.47539 * 64.99963 * 17 14 13 38 38 H 1.08000 * 126.12089 * 359.97438 * 19 18 17 39 39 H 1.08002 * 126.03940 * 180.16042 * 20 19 18 40 40 H 1.07998 * 125.89949 * 179.75673 * 21 20 19 41 41 H 1.07996 * 119.99846 * 359.97438 * 24 23 10 42 42 H 1.07997 * 119.99778 * 180.27724 * 25 24 23 43 43 H 1.07992 * 119.99947 * 179.83476 * 26 25 24 44 44 H 1.08000 * 119.99640 * 180.02562 * 27 26 25 45 45 H 1.08000 * 119.99574 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2416 -3.6599 -0.1134 11 1 2.8758 -3.5126 -0.9876 12 7 1.5030 -4.9222 -0.2512 13 6 1.1787 -5.1914 -1.6584 14 6 0.5262 -6.5702 -1.7766 15 1 -0.3875 -6.5920 -1.1826 16 8 1.4302 -7.5677 -1.2968 17 6 0.1890 -6.8509 -3.2424 18 7 -0.5422 -8.1165 -3.3415 19 6 -1.7498 -8.2928 -3.9177 20 6 -2.0736 -9.6017 -3.8045 21 6 -1.0328 -10.2456 -3.1276 22 7 -0.1142 -9.3563 -2.8495 23 6 3.0980 -3.7116 1.1255 24 6 2.6047 -4.2834 2.2834 25 6 3.3919 -4.3348 3.4186 26 6 4.6690 -3.8062 3.3985 27 6 5.1604 -3.2296 2.2422 28 6 4.3748 -3.1821 1.1058 29 1 -0.4851 0.8400 0.0004 30 1 0.5656 -2.5229 -0.8477 31 1 0.6861 -2.5925 0.9268 32 1 0.6695 -4.9174 0.3175 33 1 2.0923 -5.1697 -2.2524 34 1 0.4892 -4.4306 -2.0244 35 1 2.2667 -7.6055 -1.7804 36 1 -0.4287 -6.0427 -3.6342 37 1 1.1103 -6.9174 -3.8209 38 1 -2.3491 -7.5268 -4.3873 39 1 -2.9782 -10.0663 -4.1684 40 1 -0.9938 -11.2956 -2.8778 41 1 1.6054 -4.6927 2.3001 42 1 3.0081 -4.7855 4.3218 43 1 5.2830 -3.8440 4.2861 44 1 6.1584 -2.8170 2.2264 45 1 4.7588 -2.7321 0.2023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578564296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:39 Heat of formation + Delta-G solvation = 52.559873 kcal Electronic energy + Delta-G solvation = -25574.162379 eV Core-core repulsion = 21979.126055 eV Total energy + Delta-G solvation = -3595.036323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15585 -38.95644 -37.83234 -35.66951 -33.24514 -32.87645 -31.32616 -30.28806 -30.11969 -28.97164 -28.16292 -25.50708 -23.69572 -22.30119 -22.06831 -21.50600 -21.05440 -20.74628 -19.63634 -17.53718 -16.63956 -16.51308 -16.12351 -15.72216 -15.24609 -14.74017 -14.65821 -14.46565 -14.24474 -13.96095 -13.84100 -13.53762 -13.09400 -12.85044 -12.73627 -12.67637 -12.52063 -12.25850 -11.96924 -11.79771 -11.44767 -11.07980 -11.03726 -10.83609 -10.76330 -10.61687 -10.40472 -10.12363 -9.95887 -9.91976 -9.38078 -9.26005 -8.63389 -8.45796 -8.26256 -8.10341 -7.67750 -6.09149 -4.11232 1.86428 2.05056 2.06330 2.42939 2.81778 3.27496 3.32323 3.35187 4.04771 4.38253 4.42588 4.52024 4.69383 4.73330 4.84758 5.02709 5.12488 5.18172 5.27531 5.32031 5.47310 5.48826 5.50688 5.61263 5.68837 5.75355 5.84014 5.92879 5.97837 6.08924 6.17176 6.23074 6.47544 6.59561 6.65910 6.69474 6.91767 7.03410 7.07984 7.22214 7.33650 7.45167 7.64665 7.67593 7.69086 7.76981 7.89111 7.89719 8.30247 8.93525 9.53255 11.01876 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003268 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.994789 B = 8565.456853 C =10304.707591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.006 3.994 10 C 0.121 3.879 11 H 0.073 0.927 12 N -0.675 5.675 13 C 0.031 3.969 14 C 0.106 3.894 15 H 0.097 0.903 16 O -0.527 6.527 17 C 0.098 3.902 18 N -0.366 5.366 19 C 0.046 3.954 20 C -0.278 4.278 21 C 0.030 3.970 22 N -0.266 5.266 23 C -0.022 4.022 24 C -0.100 4.100 25 C -0.127 4.127 26 C -0.140 4.140 27 C -0.126 4.126 28 C -0.109 4.109 29 H 0.261 0.739 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.338 0.662 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.369 0.631 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.171 0.829 39 H 0.144 0.856 40 H 0.179 0.821 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -14.462 -5.577 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.032 4.032 10 C 0.012 3.988 11 H 0.092 0.908 12 N -0.304 5.304 13 C -0.100 4.100 14 C 0.045 3.955 15 H 0.115 0.885 16 O -0.330 6.330 17 C -0.025 4.025 18 N -0.148 5.148 19 C -0.100 4.100 20 C -0.308 4.308 21 C -0.156 4.156 22 N -0.087 5.087 23 C -0.023 4.023 24 C -0.119 4.119 25 C -0.145 4.145 26 C -0.158 4.158 27 C -0.144 4.144 28 C -0.128 4.128 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.156 0.844 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.215 0.785 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.188 0.812 39 H 0.161 0.839 40 H 0.196 0.804 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.410 -14.497 -4.628 15.283 hybrid contribution -0.858 1.887 -0.954 2.282 sum 0.552 -12.610 -5.581 13.801 Atomic orbital electron populations 1.69936 1.06060 1.26789 1.50749 1.24981 0.94788 0.99222 0.95204 0.86691 0.79666 0.83204 0.78723 1.20228 1.21326 1.20121 1.21089 0.93135 0.90454 1.50603 0.92248 1.19690 0.93815 0.92320 0.97337 1.20771 0.95266 0.88141 0.94596 0.90842 1.60557 1.27626 1.35640 1.06578 1.22532 1.00151 0.95131 0.92162 1.22099 0.94128 0.88076 0.91234 0.88487 1.86700 1.29673 1.56052 1.60556 1.22563 0.98020 0.81711 1.00170 1.48662 1.14766 1.07715 1.43679 1.22600 0.88807 0.98756 0.99852 1.21477 1.03346 0.93540 1.12423 1.23932 0.92877 0.99743 0.99095 1.77575 1.23033 0.88755 1.19357 1.19678 0.93282 0.94293 0.95021 1.20809 0.99391 0.99230 0.92446 1.20994 0.94695 1.00837 0.97975 1.20908 0.96239 1.00951 0.97729 1.20962 0.99432 1.00515 0.93527 1.20931 0.94095 0.99470 0.98304 0.92941 0.96177 0.96437 0.84394 0.90797 0.93777 0.78490 0.87723 0.89343 0.81211 0.83867 0.80382 0.86800 0.87100 0.87249 0.87073 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.66 8.64 -34.44 -0.30 -13.96 16 8 H 0.06 1.54 6.43 -52.49 -0.34 1.20 16 9 C 0.01 0.15 4.41 -27.88 -0.12 0.03 16 10 C 0.12 2.32 2.22 -68.86 -0.15 2.17 16 11 H 0.07 1.42 7.55 -51.93 -0.39 1.03 16 12 N -0.67 -10.92 5.53 -107.95 -0.60 -11.51 16 13 C 0.03 0.41 5.17 -3.83 -0.02 0.39 16 14 C 0.11 1.26 3.43 -26.73 -0.09 1.17 16 15 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 16 O -0.53 -7.19 12.24 -35.23 -0.43 -7.62 16 17 C 0.10 0.95 6.18 -4.04 -0.02 0.92 16 18 N -0.37 -4.25 3.68 -61.36 -0.23 -4.47 16 19 C 0.05 0.46 11.45 -17.22 -0.20 0.26 16 20 C -0.28 -2.77 10.80 -40.02 -0.43 -3.21 16 21 C 0.03 0.34 12.02 -17.37 -0.21 0.13 16 22 N -0.27 -3.59 11.56 30.62 0.35 -3.23 16 23 C -0.02 -0.43 4.49 -104.63 -0.47 -0.90 16 24 C -0.10 -1.84 9.31 -39.58 -0.37 -2.21 16 25 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 26 C -0.14 -2.24 10.05 -39.58 -0.40 -2.63 16 27 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 28 C -0.11 -2.03 8.63 -39.58 -0.34 -2.37 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.02 0.50 7.54 -51.93 -0.39 0.11 16 31 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.34 5.62 7.94 -39.29 -0.31 5.31 16 33 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 34 H 0.04 0.62 7.57 -51.93 -0.39 0.22 16 35 H 0.37 4.11 9.04 45.56 0.41 4.52 16 36 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.11 2.00 7.31 -52.49 -0.38 1.62 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.12 2.04 7.83 -52.49 -0.41 1.63 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -32.60 377.80 -9.49 -42.09 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.98 Total: 11.72 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -4.02 Total: -23.67 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.27 Total: -44.42 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.43 Total: -7.62 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.60 -9.49 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578564296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.654 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds