Wall clock time and date at job start Tue Mar 31 2020 12:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47042 * 269.99935 * 3 2 1 5 5 H 1.48506 * 109.47062 * 30.00126 * 3 2 1 6 6 H 1.48495 * 109.46994 * 149.99946 * 3 2 1 7 7 C 1.37878 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47398 * 305.00045 * 10 9 7 12 12 N 1.46896 * 109.47053 * 65.00291 * 10 9 7 13 13 C 1.46901 * 110.99913 * 205.00062 * 12 10 9 14 14 C 1.53002 * 109.47317 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.46495 * 304.99591 * 14 13 12 16 16 O 1.42895 * 109.47367 * 64.99253 * 14 13 12 17 17 C 1.52993 * 109.47470 * 184.99912 * 14 13 12 18 18 N 1.46503 * 109.47487 * 174.99675 * 17 14 13 19 19 C 1.34950 * 126.03776 * 124.99489 * 18 17 14 20 20 C 1.35305 * 107.74587 * 179.97438 * 19 18 17 21 21 C 1.39871 * 107.92128 * 0.02562 * 20 19 18 22 22 N 1.30842 * 108.20392 * 359.73746 * 21 20 19 23 23 C 1.50703 * 109.46912 * 184.99967 * 10 9 7 24 24 C 1.38233 * 119.99662 * 279.72689 * 23 10 9 25 25 C 1.38238 * 119.99748 * 179.80858 * 24 23 10 26 26 C 1.38238 * 119.99869 * 0.39869 * 25 24 23 27 27 C 1.38232 * 120.00036 * 359.86136 * 26 25 24 28 28 C 1.38232 * 120.00031 * 359.94639 * 27 26 25 29 29 H 0.97001 * 119.99531 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 31 31 H 1.08991 * 109.46995 * 299.99937 * 9 7 2 32 32 H 1.00896 * 111.00728 * 81.04206 * 12 10 9 33 33 H 1.09007 * 109.47248 * 299.99411 * 13 12 10 34 34 H 1.08990 * 109.47767 * 59.99672 * 13 12 10 35 35 H 0.96708 * 113.99805 * 60.00228 * 16 14 13 36 36 H 1.09006 * 109.46713 * 294.99669 * 17 14 13 37 37 H 1.09001 * 109.47135 * 54.99273 * 17 14 13 38 38 H 1.08003 * 126.12207 * 0.02562 * 19 18 17 39 39 H 1.08000 * 126.04422 * 180.02562 * 20 19 18 40 40 H 1.08001 * 125.90165 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.00479 * 0.02562 * 24 23 10 42 42 H 1.07997 * 120.00351 * 180.22988 * 25 24 23 43 43 H 1.08003 * 120.00083 * 179.82956 * 26 25 24 44 44 H 1.08001 * 119.99800 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.00320 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6367 -0.0001 11 1 3.5865 -3.1759 0.8414 12 7 3.6333 -3.2931 -1.2556 13 6 3.5543 -4.7500 -1.0854 14 6 3.1491 -5.3973 -2.4112 15 1 2.2200 -4.9500 -2.7647 16 8 4.1785 -5.1849 -3.3792 17 6 2.9454 -6.8994 -2.2043 18 7 2.4426 -7.4993 -3.4427 19 6 2.9972 -8.5362 -4.1048 20 6 2.2340 -8.7856 -5.1940 21 6 1.1772 -7.8693 -5.1979 22 7 1.2982 -7.1012 -4.1457 23 6 5.5233 -2.6386 0.1243 24 6 6.3093 -2.4027 -0.9881 25 6 7.6869 -2.4005 -0.8732 26 6 8.2786 -2.6423 0.3525 27 6 7.4927 -2.8835 1.4638 28 6 6.1151 -2.8818 1.3497 29 1 -0.4849 0.8401 0.0004 30 1 3.8746 -0.6809 0.8905 31 1 3.8752 -0.6798 -0.8894 32 1 4.2674 -3.0501 -2.0018 33 1 4.5271 -5.1332 -0.7770 34 1 2.8123 -4.9872 -0.3231 35 1 5.0355 -5.5574 -3.1302 36 1 3.8958 -7.3613 -1.9366 37 1 2.2243 -7.0614 -1.4032 38 1 3.8897 -9.0716 -3.8165 39 1 2.4098 -9.5559 -5.9302 40 1 0.3941 -7.8090 -5.9392 41 1 5.8470 -2.2167 -1.9463 42 1 8.3009 -2.2126 -1.7416 43 1 9.3549 -2.6433 0.4417 44 1 7.9551 -3.0728 2.4213 45 1 5.5010 -3.0698 2.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578564297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:42 Heat of formation + Delta-G solvation = 58.843229 kcal Electronic energy + Delta-G solvation = -25794.748890 eV Core-core repulsion = 22199.985034 eV Total energy + Delta-G solvation = -3594.763857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13910 -39.46545 -37.99338 -35.75415 -33.30874 -32.65320 -31.46053 -30.76163 -30.15203 -29.40077 -28.52467 -25.48205 -23.99641 -22.53797 -21.83657 -21.61807 -21.03590 -20.68270 -19.65608 -17.61136 -17.21550 -16.38950 -16.25171 -16.07346 -15.42936 -15.10181 -14.84281 -14.36338 -14.21130 -13.90110 -13.86448 -13.73828 -13.24805 -13.17850 -12.94105 -12.86528 -12.58892 -12.35104 -12.25496 -11.97277 -11.55421 -11.22399 -11.15502 -11.11345 -10.75787 -10.57110 -10.37233 -10.24779 -10.05177 -9.70304 -9.38608 -9.07380 -8.78974 -8.59698 -8.43576 -8.40600 -7.83200 -5.91080 -3.85763 1.52549 1.53578 1.89427 2.44627 2.85284 3.37680 3.44771 3.47566 3.93751 4.14095 4.23521 4.54886 4.61541 4.71670 4.95232 4.99173 5.01683 5.05396 5.08492 5.16025 5.23628 5.28650 5.34449 5.44674 5.52110 5.67066 5.69846 5.70574 5.77753 5.94752 5.96891 6.12326 6.16409 6.24135 6.54013 6.61005 6.61642 6.63257 6.79536 6.95186 7.13254 7.15520 7.21441 7.53874 7.68095 7.71720 7.85743 7.98189 8.69222 9.18912 9.71381 11.22721 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.004019 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.166052 B = 6965.021398 C = 9268.854342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.491 4.491 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.139 3.861 11 H 0.080 0.920 12 N -0.651 5.651 13 C 0.034 3.966 14 C 0.098 3.902 15 H 0.127 0.873 16 O -0.549 6.549 17 C 0.101 3.899 18 N -0.361 5.361 19 C 0.051 3.949 20 C -0.279 4.279 21 C 0.039 3.961 22 N -0.283 5.283 23 C -0.097 4.097 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.260 0.740 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.340 0.660 33 H 0.024 0.976 34 H 0.083 0.917 35 H 0.364 0.636 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.169 0.831 39 H 0.144 0.856 40 H 0.181 0.819 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.186 -16.680 -3.737 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.033 4.033 10 C 0.029 3.971 11 H 0.098 0.902 12 N -0.282 5.282 13 C -0.097 4.097 14 C 0.038 3.962 15 H 0.144 0.856 16 O -0.353 6.353 17 C -0.021 4.021 18 N -0.142 5.142 19 C -0.096 4.096 20 C -0.309 4.309 21 C -0.147 4.147 22 N -0.104 5.104 23 C -0.099 4.099 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.154 4.154 27 C -0.139 4.139 28 C -0.135 4.135 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.161 0.839 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.210 0.790 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.186 0.814 39 H 0.161 0.839 40 H 0.198 0.802 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.404 -15.119 -3.169 19.811 hybrid contribution 2.239 -0.255 -0.072 2.255 sum 14.643 -15.374 -3.242 21.477 Atomic orbital electron populations 1.69910 1.06127 1.26445 1.52128 1.24974 0.94649 0.98695 0.95285 0.86909 0.80290 0.84412 0.78393 1.20464 1.21615 1.19315 1.20965 0.88668 0.94434 1.48893 0.90413 1.19576 0.97873 0.89547 0.96275 1.20736 0.85642 0.98922 0.91762 0.90167 1.60485 1.56230 1.04664 1.06834 1.22549 0.99617 0.90821 0.96718 1.22397 0.93363 0.91023 0.89439 0.85570 1.86740 1.21108 1.81101 1.46317 1.22494 1.00249 0.95832 0.83512 1.48565 1.19990 1.25097 1.20590 1.22489 0.99973 0.92380 0.94754 1.21453 0.99985 1.06930 1.02489 1.23884 0.99574 0.94394 0.96854 1.77451 1.02465 1.22708 1.07804 1.21217 0.98717 0.96596 0.93346 1.21017 0.93560 1.00467 0.98820 1.21081 0.94804 1.00338 0.97459 1.21045 0.99343 1.01781 0.93195 1.21106 0.93953 1.00548 0.98309 1.21114 0.94623 1.00438 0.97375 0.93008 0.96361 0.96830 0.83934 0.95773 0.89881 0.79026 0.88642 0.88542 0.81411 0.83863 0.80230 0.86014 0.86501 0.86696 0.86547 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.37 13.96 55.43 0.77 -27.60 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.87 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.49 -13.83 9.39 -34.44 -0.32 -14.15 16 8 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 9 C 0.00 0.12 3.70 -27.88 -0.10 0.01 16 10 C 0.14 2.59 2.17 -68.87 -0.15 2.44 16 11 H 0.08 1.51 7.66 -51.93 -0.40 1.12 16 12 N -0.65 -11.41 5.95 -107.95 -0.64 -12.05 16 13 C 0.03 0.46 5.15 -3.82 -0.02 0.44 16 14 C 0.10 1.27 3.33 -26.73 -0.09 1.18 16 15 H 0.13 2.15 8.06 -51.93 -0.42 1.73 16 16 O -0.55 -7.09 12.80 -35.23 -0.45 -7.54 16 17 C 0.10 1.03 6.15 -4.04 -0.02 1.01 16 18 N -0.36 -4.43 3.62 -61.37 -0.22 -4.65 16 19 C 0.05 0.51 11.45 -17.23 -0.20 0.31 16 20 C -0.28 -2.90 10.80 -40.02 -0.43 -3.33 16 21 C 0.04 0.48 12.03 -17.36 -0.21 0.27 16 22 N -0.28 -4.23 12.35 30.63 0.38 -3.86 16 23 C -0.10 -1.54 4.71 -104.62 -0.49 -2.03 16 24 C -0.12 -1.76 9.12 -39.58 -0.36 -2.12 16 25 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 26 C -0.14 -1.62 10.05 -39.58 -0.40 -2.02 16 27 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 28 C -0.12 -1.69 9.67 -39.58 -0.38 -2.07 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 32 H 0.34 5.73 5.90 -39.29 -0.23 5.50 16 33 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 34 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.36 3.21 9.05 45.56 0.41 3.63 16 36 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.12 1.77 6.50 -52.48 -0.34 1.43 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.12 1.63 8.04 -52.48 -0.42 1.20 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -35.18 377.07 -9.19 -44.37 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.96 Total: 10.27 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -4.08 Total: -22.11 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.29 Total: -48.16 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.45 Total: -7.54 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.18 -9.19 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578564297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.211 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds