Wall clock time and date at job start Tue Mar 31 2020 12:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48503 * 109.46825 * 239.99950 * 3 2 1 5 5 H 1.48495 * 109.47439 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46922 * 120.00052 * 3 2 1 7 7 C 1.37876 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47565 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47027 * 305.00244 * 10 9 7 12 12 N 1.46903 * 109.47044 * 64.99527 * 10 9 7 13 13 C 1.46897 * 111.00344 * 205.00335 * 12 10 9 14 14 C 1.52992 * 109.47647 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47256 * 59.99776 * 14 13 12 16 16 O 1.42903 * 109.47063 * 299.99964 * 14 13 12 17 17 C 1.53002 * 109.47564 * 179.97438 * 14 13 12 18 18 N 1.46500 * 109.47148 * 184.99803 * 17 14 13 19 19 C 1.34946 * 126.03644 * 124.95038 * 18 17 14 20 20 C 1.35316 * 107.74870 * 180.02562 * 19 18 17 21 21 C 1.39875 * 107.91722 * 0.02562 * 20 19 18 22 22 N 1.30829 * 108.20298 * 0.02562 * 21 20 19 23 23 C 1.50701 * 109.47607 * 184.99648 * 10 9 7 24 24 C 1.38236 * 120.00108 * 279.72791 * 23 10 9 25 25 C 1.38231 * 120.00017 * 179.80886 * 24 23 10 26 26 C 1.38241 * 119.99589 * 0.39523 * 25 24 23 27 27 C 1.38233 * 120.00213 * 359.85643 * 26 25 24 28 28 C 1.38229 * 120.00139 * 359.96107 * 27 26 25 29 29 H 0.96995 * 119.99913 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47429 * 59.99643 * 9 7 2 31 31 H 1.09002 * 109.47039 * 299.99426 * 9 7 2 32 32 H 1.00903 * 110.99777 * 328.95989 * 12 10 9 33 33 H 1.09004 * 109.46975 * 59.99785 * 13 12 10 34 34 H 1.09005 * 109.47318 * 300.00313 * 13 12 10 35 35 H 0.96700 * 113.99890 * 299.99883 * 16 14 13 36 36 H 1.08996 * 109.46833 * 64.99795 * 17 14 13 37 37 H 1.08993 * 109.46978 * 305.00271 * 17 14 13 38 38 H 1.07999 * 126.12479 * 0.04451 * 19 18 17 39 39 H 1.07999 * 126.03957 * 180.26092 * 20 19 18 40 40 H 1.08004 * 125.89587 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.99888 * 359.97438 * 24 23 10 42 42 H 1.07995 * 119.99904 * 180.22999 * 25 24 23 43 43 H 1.08000 * 119.99658 * 179.83699 * 26 25 24 44 44 H 1.07996 * 119.99872 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00221 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8412 12 7 3.0084 -3.6539 1.2557 13 6 4.3096 -4.3140 1.0852 14 6 5.0733 -4.2863 2.4105 15 1 4.4970 -4.8106 3.1730 16 8 5.2763 -2.9309 2.8151 17 6 6.4282 -4.9745 2.2330 18 7 7.1088 -5.0542 3.5279 19 6 7.5790 -6.1772 4.1098 20 6 8.1360 -5.8270 5.2923 21 6 8.0010 -4.4424 5.4382 22 7 7.3847 -3.9783 4.3816 23 6 1.4959 -4.9637 -0.1232 24 6 0.8991 -5.5262 0.9896 25 6 0.2084 -6.7181 0.8753 26 6 0.1215 -7.3517 -0.3503 27 6 0.7227 -6.7919 -1.4620 28 6 1.4102 -5.5980 -1.3485 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8904 32 1 3.1229 -2.7135 1.6032 33 1 4.8856 -3.7900 0.3224 34 1 4.1548 -5.3481 0.7770 35 1 5.7832 -2.4034 2.1826 36 1 7.0388 -4.4002 1.5363 37 1 6.2764 -5.9796 1.8398 38 1 7.5214 -7.1766 3.7043 39 1 8.6055 -6.4974 5.9969 40 1 8.3460 -3.8576 6.2781 41 1 0.9702 -5.0330 1.9478 42 1 -0.2610 -7.1556 1.7439 43 1 -0.4160 -8.2843 -0.4391 44 1 0.6551 -7.2871 -2.4194 45 1 1.8795 -5.1604 -2.2171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578564298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:46 Heat of formation + Delta-G solvation = 50.119667 kcal Electronic energy + Delta-G solvation = -25760.193852 eV Core-core repulsion = 22165.051713 eV Total energy + Delta-G solvation = -3595.142139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14330 -39.06156 -37.85851 -35.59108 -33.25830 -32.77447 -31.30185 -30.43730 -30.11885 -29.25182 -28.13725 -25.31991 -23.99595 -22.24822 -21.89613 -21.59115 -21.03701 -20.72509 -19.55038 -17.49037 -16.67405 -16.34607 -16.10812 -15.94820 -15.18852 -14.94746 -14.72403 -14.54485 -14.27775 -14.07968 -13.66373 -13.52512 -13.18680 -12.89915 -12.85175 -12.73541 -12.38791 -12.21378 -12.06230 -11.84517 -11.28628 -11.07423 -11.01542 -10.83299 -10.63999 -10.58502 -10.48946 -10.35838 -10.06614 -9.62531 -9.36622 -9.20754 -8.62243 -8.49415 -8.42000 -8.11407 -7.83536 -6.06275 -4.10888 1.81510 1.86851 1.88290 2.44287 2.83674 3.30019 3.35369 3.37069 4.08716 4.26097 4.41132 4.47802 4.71239 4.73136 4.93043 5.05737 5.11431 5.18090 5.29591 5.30930 5.35060 5.38396 5.49245 5.52582 5.64612 5.69992 5.80078 5.93748 5.98551 6.01970 6.08341 6.25456 6.39830 6.50932 6.61249 6.68517 6.87225 6.93286 6.94293 7.14983 7.39861 7.48682 7.56466 7.71266 7.80980 7.89443 7.93626 8.17715 8.28056 8.93864 9.53894 11.04226 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.004339 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.918597 B = 6451.960382 C = 9346.449890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.029 3.971 10 C 0.127 3.873 11 H 0.040 0.960 12 N -0.673 5.673 13 C 0.031 3.969 14 C 0.104 3.896 15 H 0.107 0.893 16 O -0.534 6.534 17 C 0.099 3.901 18 N -0.365 5.365 19 C 0.044 3.956 20 C -0.278 4.278 21 C 0.031 3.969 22 N -0.264 5.264 23 C -0.054 4.054 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.128 4.128 28 C -0.125 4.125 29 H 0.262 0.738 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.367 0.633 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.370 0.630 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.170 0.830 39 H 0.143 0.857 40 H 0.179 0.821 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 -15.484 3.561 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.070 0.930 9 C -0.008 4.008 10 C 0.018 3.982 11 H 0.058 0.942 12 N -0.308 5.308 13 C -0.100 4.100 14 C 0.043 3.957 15 H 0.124 0.876 16 O -0.337 6.337 17 C -0.024 4.024 18 N -0.148 5.148 19 C -0.102 4.102 20 C -0.308 4.308 21 C -0.156 4.156 22 N -0.085 5.085 23 C -0.054 4.054 24 C -0.107 4.107 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.146 4.146 28 C -0.143 4.143 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.191 0.809 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.217 0.783 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.187 0.813 39 H 0.161 0.839 40 H 0.196 0.804 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.453 -15.044 3.608 18.671 hybrid contribution 1.493 0.810 -0.737 1.852 sum 11.946 -14.234 2.871 18.803 Atomic orbital electron populations 1.69949 1.06075 1.26898 1.49771 1.24962 0.94775 0.99161 0.94941 0.86683 0.79658 0.83210 0.78624 1.20400 1.21265 1.19980 1.21047 0.92577 0.90918 1.51976 0.92980 1.19242 0.93600 0.89714 0.98223 1.20656 0.95160 0.92642 0.89733 0.94223 1.60349 1.14661 1.26679 1.29152 1.22534 0.91994 1.00474 0.94971 1.22189 0.91627 0.84276 0.97635 0.87566 1.86741 1.77141 1.20612 1.49242 1.22550 0.94964 1.03783 0.81066 1.48656 1.44704 1.04784 1.16648 1.22562 0.99449 0.92740 0.95409 1.21475 1.13159 0.96083 1.00038 1.23944 0.99153 0.94660 0.97853 1.77604 1.18526 1.10062 1.02330 1.20219 0.96849 0.95642 0.92722 1.21068 0.95683 0.94580 0.99335 1.21137 1.00053 0.96405 0.97215 1.20980 1.01207 1.00077 0.93334 1.20972 0.99112 0.96399 0.98103 1.21043 1.00477 0.95436 0.97382 0.92788 0.95895 0.95327 0.80931 0.95264 0.90971 0.78315 0.89539 0.87887 0.81308 0.83886 0.80359 0.85367 0.86876 0.87093 0.86949 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -13.99 8.12 -34.44 -0.28 -14.27 16 8 H 0.05 1.32 7.49 -52.49 -0.39 0.93 16 9 C 0.03 0.73 4.55 -27.89 -0.13 0.60 16 10 C 0.13 2.50 2.19 -68.86 -0.15 2.34 16 11 H 0.04 0.79 7.66 -51.93 -0.40 0.39 16 12 N -0.67 -11.91 5.54 -107.95 -0.60 -12.50 16 13 C 0.03 0.43 5.18 -3.83 -0.02 0.41 16 14 C 0.10 1.31 3.45 -26.73 -0.09 1.22 16 15 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 16 O -0.53 -8.04 11.71 -35.23 -0.41 -8.45 16 17 C 0.10 0.98 6.18 -4.04 -0.02 0.95 16 18 N -0.37 -4.35 3.68 -61.37 -0.23 -4.58 16 19 C 0.04 0.44 11.45 -17.22 -0.20 0.24 16 20 C -0.28 -2.82 10.80 -40.01 -0.43 -3.25 16 21 C 0.03 0.36 12.03 -17.37 -0.21 0.15 16 22 N -0.26 -3.75 11.56 30.63 0.35 -3.40 16 23 C -0.05 -0.96 4.71 -104.62 -0.49 -1.45 16 24 C -0.09 -1.52 9.33 -39.58 -0.37 -1.89 16 25 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 26 C -0.14 -1.92 10.05 -39.58 -0.40 -2.31 16 27 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 28 C -0.12 -2.03 9.67 -39.58 -0.38 -2.41 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.37 7.38 6.60 -39.29 -0.26 7.12 16 33 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 35 H 0.37 4.67 9.05 45.56 0.41 5.09 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.13 2.29 7.71 -52.49 -0.40 1.88 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.11 1.75 8.04 -52.49 -0.42 1.32 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -32.22 379.79 -9.59 -41.82 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.08 Total: 13.19 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -4.07 Total: -22.56 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.27 Total: -45.87 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.41 Total: -8.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.22 -9.59 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578564298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.936 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds