Wall clock time and date at job start Tue Mar 31 2020 10:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20758 * 120.00179 * 2 1 4 4 C 1.50702 * 119.99335 * 180.27133 * 2 1 3 5 5 H 1.08998 * 112.85328 * 313.53344 * 4 2 1 6 6 C 1.53784 * 113.61035 * 182.23105 * 4 2 1 7 7 C 1.53782 * 87.07875 * 220.01944 * 6 4 2 8 8 H 1.08996 * 113.69260 * 270.86971 * 7 6 4 9 9 C 1.50706 * 113.61333 * 139.98071 * 7 6 4 10 10 O 1.21284 * 120.00098 * 262.50591 * 9 7 6 11 11 N 1.34780 * 119.99808 * 82.50077 * 9 7 6 12 12 C 1.39933 * 119.99771 * 183.90365 * 11 9 7 13 13 C 1.39298 * 119.94611 * 144.73778 * 12 11 9 14 14 C 1.38485 * 120.42927 * 179.97438 * 13 12 11 15 15 C 1.37685 * 120.32214 * 359.97438 * 14 13 12 16 16 C 1.40745 * 119.88357 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.20859 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99876 * 213.77258 * 17 16 15 19 19 C 1.39931 * 120.00298 * 33.76407 * 17 16 15 20 20 N 1.30830 * 119.99780 * 5.87106 * 19 17 16 21 21 Si 1.86794 * 120.00396 * 185.86832 * 19 17 16 22 22 H 1.48501 * 109.46897 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47241 * 119.99907 * 21 19 17 24 24 H 1.48497 * 109.47385 * 240.00360 * 21 19 17 25 25 C 1.38240 * 119.95080 * 324.46032 * 12 11 9 26 26 C 1.53773 * 87.08169 * 25.43484 * 7 6 4 27 27 C 1.53001 * 113.61570 * 220.01767 * 26 7 6 28 28 C 1.52997 * 113.61895 * 89.11452 * 26 7 6 29 29 H 1.09001 * 109.46439 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46969 * 119.99890 * 1 2 3 31 31 H 1.08993 * 109.47413 * 240.00617 * 1 2 3 32 32 H 1.08999 * 113.61531 * 334.56405 * 6 4 2 33 33 H 1.08998 * 113.61584 * 105.47310 * 6 4 2 34 34 H 0.97003 * 119.99929 * 3.91144 * 11 9 7 35 35 H 1.08000 * 119.78451 * 359.96892 * 13 12 11 36 36 H 1.08002 * 119.84128 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.05973 * 180.02562 * 15 14 13 38 38 H 0.97001 * 120.00136 * 179.97438 * 20 19 17 39 39 H 1.08006 * 120.15930 * 0.02562 * 25 12 11 40 40 H 1.08999 * 109.47555 * 157.49634 * 27 26 7 41 41 H 1.09001 * 109.47575 * 277.50035 * 27 26 7 42 42 H 1.09006 * 109.47138 * 37.49508 * 27 26 7 43 43 H 1.09005 * 109.47055 * 326.77273 * 28 26 7 44 44 H 1.09004 * 109.46886 * 86.76321 * 28 26 7 45 45 H 1.08996 * 109.47391 * 206.76983 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3052 -0.0062 5 1 1.8729 -2.0211 0.7186 6 6 3.7878 -1.1350 0.0495 7 6 3.8743 -2.2884 -0.9640 8 1 3.9296 -3.2741 -0.5021 9 6 4.9223 -2.0807 -2.0269 10 8 4.6063 -1.6417 -3.1125 11 7 6.2107 -2.3826 -1.7711 12 6 7.1956 -2.1138 -2.7280 13 6 8.4663 -1.7109 -2.3238 14 6 9.4487 -1.4427 -3.2623 15 6 9.1799 -1.5721 -4.6064 16 6 7.9005 -1.9782 -5.0297 17 6 7.6170 -2.1138 -6.4085 18 1 6.6298 -1.8849 -6.7818 19 6 8.6156 -2.5445 -7.2891 20 7 9.7756 -2.9312 -6.8239 21 14 8.2924 -2.5672 -9.1287 22 1 6.9133 -2.0849 -9.3950 23 1 9.2671 -1.6806 -9.8136 24 1 8.4398 -3.9535 -9.6402 25 6 6.9078 -2.2539 -4.0728 26 6 2.4565 -1.8966 -1.4121 27 6 1.5525 -3.0961 -1.7039 28 6 2.4334 -0.8487 -2.5265 29 1 -0.3632 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3634 -0.5137 0.8900 32 1 4.1354 -0.1802 -0.3450 33 1 4.2187 -1.3747 1.0215 34 1 6.4552 -2.7864 -0.9236 35 1 8.6868 -1.6069 -1.2716 36 1 10.4308 -1.1314 -2.9383 37 1 9.9493 -1.3622 -5.3346 38 1 10.4677 -3.2301 -7.4343 39 1 5.9240 -2.5701 -4.3871 40 1 0.5087 -2.7932 -1.6210 41 1 1.7462 -3.4602 -2.7128 42 1 1.7586 -3.8897 -0.9855 43 1 3.2788 -0.1712 -2.4058 44 1 2.5017 -1.3458 -3.4942 45 1 1.5036 -0.2824 -2.4737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579802477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:46 Heat of formation + Delta-G solvation = -36.246213 kcal Electronic energy + Delta-G solvation = -26326.507733 eV Core-core repulsion = 22695.327738 eV Total energy + Delta-G solvation = -3631.179995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40067 -39.36055 -37.96426 -36.71061 -34.39384 -32.98857 -31.04953 -30.67513 -29.76474 -28.61821 -27.39763 -26.65152 -25.22950 -23.12407 -21.99770 -20.96489 -20.39271 -19.32557 -18.37058 -17.51217 -16.95742 -15.82750 -15.60327 -15.54270 -15.30564 -14.94929 -14.85547 -14.55229 -14.09843 -13.71746 -13.59141 -13.35684 -12.98689 -12.85783 -12.66562 -12.41567 -12.19149 -12.18295 -11.91636 -11.67815 -11.64811 -11.46759 -11.13933 -11.10560 -11.04534 -10.90992 -10.79125 -10.41082 -10.23236 -10.06248 -9.67992 -9.52306 -9.29483 -9.02827 -8.67162 -7.34681 -6.88284 -6.58612 -4.31959 1.80118 2.62158 2.86909 3.13794 3.19062 3.21179 3.33434 3.62016 3.93540 4.03474 4.13270 4.26688 4.49870 4.62604 4.74917 4.89140 5.08521 5.12065 5.18537 5.23451 5.30552 5.33656 5.49201 5.57736 5.67839 5.73569 5.78446 5.86971 5.97549 6.01864 6.12655 6.25897 6.31905 6.39500 6.64438 6.83463 7.05085 7.07842 7.12677 7.32029 7.37354 7.60095 7.76966 7.98529 8.16181 8.21051 8.30587 8.69969 8.78695 9.00052 9.02476 10.35380 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.003211 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.138280 B = 8719.287634 C = 9477.574415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.368 3.632 3 O -0.452 6.452 4 C -0.164 4.164 5 H 0.118 0.882 6 C -0.107 4.107 7 C -0.130 4.130 8 H 0.114 0.886 9 C 0.513 3.487 10 O -0.509 6.509 11 N -0.667 5.667 12 C 0.143 3.857 13 C -0.251 4.251 14 C -0.098 4.098 15 C -0.159 4.159 16 C 0.118 3.882 17 C -0.463 4.463 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.811 5.811 21 Si 0.911 3.089 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.276 1.276 25 C -0.199 4.199 26 C -0.036 4.036 27 C -0.139 4.139 28 C -0.119 4.119 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.277 0.723 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.746 -1.228 13.772 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.243 3.757 3 O -0.325 6.325 4 C -0.182 4.182 5 H 0.136 0.864 6 C -0.145 4.145 7 C -0.151 4.151 8 H 0.131 0.869 9 C 0.299 3.701 10 O -0.383 6.383 11 N -0.310 5.310 12 C 0.051 3.949 13 C -0.273 4.273 14 C -0.117 4.117 15 C -0.179 4.179 16 C 0.115 3.885 17 C -0.494 4.494 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.438 5.438 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.220 4.220 26 C -0.037 4.037 27 C -0.196 4.196 28 C -0.176 4.176 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.471 -0.430 12.908 19.396 hybrid contribution 0.142 -0.556 -0.224 0.616 sum -14.329 -0.986 12.684 19.162 Atomic orbital electron populations 1.22341 0.94614 1.04769 1.04438 1.24293 0.91772 0.89817 0.69853 1.90420 1.72036 1.34808 1.35278 1.23366 0.97033 0.97579 1.00263 0.86389 1.22762 0.93960 0.98933 0.98856 1.22894 0.94636 1.00871 0.96730 0.86851 1.20335 0.82894 0.78076 0.88756 1.90754 1.80115 1.43245 1.24195 1.43499 1.06689 1.61707 1.19139 1.17487 0.87743 1.01142 0.88486 1.20118 0.94024 1.15764 0.97356 1.20496 0.96682 1.00750 0.93783 1.21384 0.98813 1.03858 0.93847 1.17541 0.90740 0.87268 0.92917 1.19557 0.97823 1.40217 0.91822 0.90506 1.25841 0.94311 0.93026 1.01089 1.69790 1.04296 1.32984 1.36770 0.86218 0.79636 0.78420 0.82144 1.18540 1.19931 1.20100 1.21223 1.00984 1.09481 0.90351 1.21580 0.93180 0.96358 0.92603 1.21811 0.98842 0.96339 1.02578 1.21740 1.00422 0.97378 0.98077 0.90184 0.88888 0.89155 0.88327 0.90247 0.76978 0.89286 0.89022 0.86396 0.91255 0.87017 0.92175 0.91585 0.92345 0.91278 0.90275 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 10.26 36.01 0.37 -1.01 16 2 C 0.37 3.79 5.05 -29.03 -0.15 3.64 16 3 O -0.45 -6.53 16.61 6.00 0.10 -6.43 16 4 C -0.16 -1.48 3.60 -90.96 -0.33 -1.81 16 5 H 0.12 0.72 8.10 -51.93 -0.42 0.30 16 6 C -0.11 -1.18 6.62 -25.92 -0.17 -1.35 16 7 C -0.13 -1.51 3.65 -90.96 -0.33 -1.85 16 8 H 0.11 1.02 7.96 -51.93 -0.41 0.60 16 9 C 0.51 8.73 6.88 -10.98 -0.08 8.66 16 10 O -0.51 -10.66 10.19 5.55 0.06 -10.61 16 11 N -0.67 -11.70 5.33 -9.91 -0.05 -11.75 16 12 C 0.14 3.23 6.28 -83.76 -0.53 2.71 16 13 C -0.25 -5.56 9.97 -39.10 -0.39 -5.95 16 14 C -0.10 -2.32 10.02 -39.69 -0.40 -2.71 16 15 C -0.16 -4.24 8.63 -38.84 -0.34 -4.57 16 16 C 0.12 3.28 5.51 -106.85 -0.59 2.69 16 17 C -0.46 -12.92 9.04 -37.74 -0.34 -13.26 16 18 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 19 C 0.07 1.89 5.31 -17.34 -0.09 1.80 16 20 N -0.81 -21.65 10.94 55.55 0.61 -21.04 16 21 Si 0.91 19.61 29.56 -169.99 -5.03 14.59 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.20 -5.16 8.43 -38.69 -0.33 -5.49 16 26 C -0.04 -0.40 1.20 -153.70 -0.18 -0.58 16 27 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 28 C -0.12 -1.67 6.62 37.16 0.25 -1.43 16 29 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 1.39 6.92 -51.93 -0.36 1.03 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 5.42 8.82 -40.82 -0.36 5.06 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.23 6.43 -52.49 -0.34 2.90 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.11 2.97 6.27 -52.48 -0.33 2.65 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 42 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 43 H 0.07 1.18 6.11 -51.93 -0.32 0.86 16 44 H 0.08 1.24 7.17 -51.93 -0.37 0.87 16 45 H 0.04 0.46 7.22 -51.93 -0.37 0.08 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -32.43 364.20 -8.73 -41.15 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.62 Total: 9.97 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.28 Total: -21.38 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.55 Total: -32.79 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.16 Total: -17.03 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.43 -8.73 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579802477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.908 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds