Wall clock time and date at job start Tue Mar 31 2020 10:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20758 * 120.00179 * 2 1 4 4 C 1.50702 * 119.99335 * 180.27133 * 2 1 3 5 5 H 1.08998 * 112.85328 * 313.53344 * 4 2 1 6 6 C 1.53784 * 113.61035 * 182.23105 * 4 2 1 7 7 C 1.53782 * 87.07875 * 220.01944 * 6 4 2 8 8 H 1.08996 * 113.69260 * 270.86971 * 7 6 4 9 9 C 1.50706 * 113.61333 * 139.98071 * 7 6 4 10 10 O 1.21284 * 120.00098 * 262.50591 * 9 7 6 11 11 N 1.34780 * 119.99808 * 82.50077 * 9 7 6 12 12 C 1.39933 * 119.99771 * 183.90365 * 11 9 7 13 13 C 1.39298 * 119.94611 * 144.73778 * 12 11 9 14 14 C 1.38485 * 120.42927 * 179.97438 * 13 12 11 15 15 C 1.37685 * 120.32214 * 359.97438 * 14 13 12 16 16 C 1.40745 * 119.88357 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.20859 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99876 * 213.77258 * 17 16 15 19 19 C 1.39931 * 120.00298 * 33.76407 * 17 16 15 20 20 N 1.30830 * 119.99780 * 5.87106 * 19 17 16 21 21 Si 1.86794 * 120.00396 * 185.86832 * 19 17 16 22 22 H 1.48501 * 109.46897 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47241 * 119.99907 * 21 19 17 24 24 H 1.48497 * 109.47385 * 240.00360 * 21 19 17 25 25 C 1.38240 * 119.95080 * 324.46032 * 12 11 9 26 26 C 1.53773 * 87.08169 * 25.43484 * 7 6 4 27 27 C 1.53001 * 113.61570 * 220.01767 * 26 7 6 28 28 C 1.52997 * 113.61895 * 89.11452 * 26 7 6 29 29 H 1.09001 * 109.46439 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46969 * 119.99890 * 1 2 3 31 31 H 1.08993 * 109.47413 * 240.00617 * 1 2 3 32 32 H 1.08999 * 113.61531 * 334.56405 * 6 4 2 33 33 H 1.08998 * 113.61584 * 105.47310 * 6 4 2 34 34 H 0.97003 * 119.99929 * 3.91144 * 11 9 7 35 35 H 1.08000 * 119.78451 * 359.96892 * 13 12 11 36 36 H 1.08002 * 119.84128 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.05973 * 180.02562 * 15 14 13 38 38 H 0.97001 * 120.00136 * 179.97438 * 20 19 17 39 39 H 1.08006 * 120.15930 * 0.02562 * 25 12 11 40 40 H 1.08999 * 109.47555 * 157.49634 * 27 26 7 41 41 H 1.09001 * 109.47575 * 277.50035 * 27 26 7 42 42 H 1.09006 * 109.47138 * 37.49508 * 27 26 7 43 43 H 1.09005 * 109.47055 * 326.77273 * 28 26 7 44 44 H 1.09004 * 109.46886 * 86.76321 * 28 26 7 45 45 H 1.08996 * 109.47391 * 206.76983 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3052 -0.0062 5 1 1.8729 -2.0211 0.7186 6 6 3.7878 -1.1350 0.0495 7 6 3.8743 -2.2884 -0.9640 8 1 3.9296 -3.2741 -0.5021 9 6 4.9223 -2.0807 -2.0269 10 8 4.6063 -1.6417 -3.1125 11 7 6.2107 -2.3826 -1.7711 12 6 7.1956 -2.1138 -2.7280 13 6 8.4663 -1.7109 -2.3238 14 6 9.4487 -1.4427 -3.2623 15 6 9.1799 -1.5721 -4.6064 16 6 7.9005 -1.9782 -5.0297 17 6 7.6170 -2.1138 -6.4085 18 1 6.6298 -1.8849 -6.7818 19 6 8.6156 -2.5445 -7.2891 20 7 9.7756 -2.9312 -6.8239 21 14 8.2924 -2.5672 -9.1287 22 1 6.9133 -2.0849 -9.3950 23 1 9.2671 -1.6806 -9.8136 24 1 8.4398 -3.9535 -9.6402 25 6 6.9078 -2.2539 -4.0728 26 6 2.4565 -1.8966 -1.4121 27 6 1.5525 -3.0961 -1.7039 28 6 2.4334 -0.8487 -2.5265 29 1 -0.3632 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3634 -0.5137 0.8900 32 1 4.1354 -0.1802 -0.3450 33 1 4.2187 -1.3747 1.0215 34 1 6.4552 -2.7864 -0.9236 35 1 8.6868 -1.6069 -1.2716 36 1 10.4308 -1.1314 -2.9383 37 1 9.9493 -1.3622 -5.3346 38 1 10.4677 -3.2301 -7.4343 39 1 5.9240 -2.5701 -4.3871 40 1 0.5087 -2.7932 -1.6210 41 1 1.7462 -3.4602 -2.7128 42 1 1.7586 -3.8897 -0.9855 43 1 3.2788 -0.1712 -2.4058 44 1 2.5017 -1.3458 -3.4942 45 1 1.5036 -0.2824 -2.4737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579802477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:45 Heat of formation + Delta-G solvation = -55.906270 kcal Electronic energy + Delta-G solvation = -26327.360257 eV Core-core repulsion = 22695.327738 eV Total energy + Delta-G solvation = -3632.032519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41398 -40.67708 -39.31200 -38.19754 -36.14124 -34.82055 -31.94825 -31.74397 -31.40308 -30.19820 -28.36728 -27.75794 -27.22171 -24.15491 -23.30682 -22.78819 -21.84666 -20.63063 -19.57845 -19.01527 -18.17972 -17.41066 -16.93585 -16.66186 -16.51382 -16.38772 -16.10945 -16.05706 -15.38393 -14.99157 -14.69364 -14.63183 -14.42874 -14.19358 -13.99427 -13.56376 -13.35476 -13.27251 -13.02267 -12.97613 -12.90353 -12.86271 -12.77416 -12.53521 -12.34798 -12.19717 -12.01307 -11.89274 -11.72935 -11.45208 -11.19276 -11.08283 -10.80351 -10.54411 -10.13609 -9.33408 -8.74927 -8.54020 -6.41493 0.86490 0.98485 1.02881 1.34429 1.43908 1.49841 1.80367 2.21116 2.28914 2.76974 3.15624 3.25156 3.43045 3.60782 3.66305 3.79849 4.11341 4.22522 4.30943 4.45327 4.51349 4.52649 4.59655 4.61420 4.69472 4.73459 4.78084 4.90978 4.97876 5.03592 5.06024 5.10331 5.12907 5.16226 5.22823 5.24903 5.30384 5.33220 5.46344 5.52773 5.78566 5.85304 6.04263 6.12145 6.35420 6.63144 6.67689 6.70536 6.94222 7.00008 7.40504 8.40230 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.003211 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.138280 B = 8719.287634 C = 9477.574415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.363 3.637 3 O -0.506 6.506 4 C -0.145 4.145 5 H 0.169 0.831 6 C -0.111 4.111 7 C -0.121 4.121 8 H 0.158 0.842 9 C 0.504 3.496 10 O -0.555 6.555 11 N -0.659 5.659 12 C 0.151 3.849 13 C -0.242 4.242 14 C -0.097 4.097 15 C -0.186 4.186 16 C 0.087 3.913 17 C -0.507 4.507 18 H 0.060 0.940 19 C 0.033 3.967 20 N -0.838 5.838 21 Si 0.984 3.016 22 H -0.267 1.267 23 H -0.260 1.260 24 H -0.262 1.262 25 C -0.224 4.224 26 C -0.040 4.040 27 C -0.135 4.135 28 C -0.111 4.111 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.420 0.580 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.286 0.714 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.027 0.973 44 H 0.049 0.951 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 -2.919 16.801 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.242 3.758 3 O -0.383 6.383 4 C -0.164 4.164 5 H 0.187 0.813 6 C -0.149 4.149 7 C -0.141 4.141 8 H 0.175 0.825 9 C 0.293 3.707 10 O -0.432 6.432 11 N -0.305 5.305 12 C 0.058 3.942 13 C -0.263 4.263 14 C -0.116 4.116 15 C -0.206 4.206 16 C 0.084 3.916 17 C -0.538 4.538 18 H 0.078 0.922 19 C -0.179 4.179 20 N -0.465 5.465 21 Si 0.805 3.195 22 H -0.191 1.191 23 H -0.185 1.185 24 H -0.186 1.186 25 C -0.246 4.246 26 C -0.041 4.041 27 C -0.192 4.192 28 C -0.169 4.169 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.257 0.743 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.953 -2.147 15.996 22.693 hybrid contribution 0.571 0.026 -1.044 1.190 sum -15.382 -2.121 14.952 21.556 Atomic orbital electron populations 1.22381 0.91591 1.05089 1.06716 1.24989 0.93603 0.89445 0.67789 1.90425 1.73333 1.36627 1.37878 1.23446 0.95553 0.97819 0.99542 0.81335 1.22740 0.95992 0.96503 0.99620 1.23110 0.92574 1.03321 0.95137 0.82459 1.21505 0.83381 0.76455 0.89389 1.90761 1.80795 1.44903 1.26784 1.43473 1.06154 1.61795 1.19043 1.17582 0.89203 0.99117 0.88327 1.20560 0.93049 1.13411 0.99236 1.20864 0.98515 0.99467 0.92743 1.21319 0.98109 1.06028 0.95171 1.17869 0.91946 0.88232 0.93539 1.19701 0.98000 1.43045 0.93075 0.92197 1.26655 0.93711 0.91887 1.05668 1.69838 1.05002 1.33077 1.38631 0.85138 0.79289 0.79143 0.75940 1.19065 1.18484 1.18640 1.21180 0.99886 1.11382 0.92157 1.21567 0.93567 0.96421 0.92545 1.21817 0.99582 0.95758 1.01995 1.21560 0.99213 0.97676 0.98409 0.91062 0.87404 0.85646 0.92491 0.87063 0.74263 0.85005 0.85919 0.88105 0.90358 0.89080 0.89802 0.94030 0.89411 0.95394 0.93157 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.05 10.26 71.24 0.73 -1.32 16 2 C 0.36 6.73 5.05 29.10 0.15 6.87 16 3 O -0.51 -14.71 16.61 -1.44 -0.02 -14.73 16 4 C -0.15 -2.08 3.60 -11.01 -0.04 -2.12 16 5 H 0.17 0.83 8.10 -2.39 -0.02 0.81 16 6 C -0.11 -2.15 6.62 31.12 0.21 -1.95 16 7 C -0.12 -2.51 3.65 -11.01 -0.04 -2.55 16 8 H 0.16 1.97 7.96 -2.39 -0.02 1.95 16 9 C 0.50 17.24 6.88 87.66 0.60 17.84 16 10 O -0.56 -24.87 10.19 -3.04 -0.03 -24.90 16 11 N -0.66 -22.52 5.33 -303.64 -1.62 -24.14 16 12 C 0.15 6.88 6.28 38.10 0.24 7.12 16 13 C -0.24 -10.34 9.97 22.58 0.23 -10.12 16 14 C -0.10 -4.56 10.02 22.20 0.22 -4.33 16 15 C -0.19 -10.33 8.63 22.75 0.20 -10.14 16 16 C 0.09 5.12 5.51 -21.31 -0.12 5.00 16 17 C -0.51 -30.35 9.04 23.46 0.21 -30.13 16 18 H 0.06 3.61 7.85 -2.91 -0.02 3.59 16 19 C 0.03 1.81 5.31 85.25 0.45 2.26 16 20 N -0.84 -46.33 10.94 21.82 0.24 -46.09 16 21 Si 0.98 41.66 29.56 68.60 2.03 43.69 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 C -0.22 -12.33 8.43 22.85 0.19 -12.14 16 26 C -0.04 -0.80 1.20 -51.66 -0.06 -0.86 16 27 C -0.13 -1.88 9.19 71.98 0.66 -1.22 16 28 C -0.11 -3.28 6.62 71.98 0.48 -2.81 16 29 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 1.63 6.92 -2.39 -0.02 1.61 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.42 10.26 8.82 -92.71 -0.82 9.44 16 35 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 37 H 0.10 5.83 6.43 -2.91 -0.02 5.81 16 38 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 39 H 0.09 5.27 6.27 -2.91 -0.02 5.25 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.04 0.80 8.11 -2.39 -0.02 0.78 16 42 H 0.09 0.76 7.94 -2.38 -0.02 0.74 16 43 H 0.03 1.02 6.11 -2.38 -0.01 1.01 16 44 H 0.05 1.73 7.17 -2.38 -0.02 1.71 16 45 H 0.05 1.27 7.22 -2.39 -0.02 1.25 16 Total: -1.00 -80.83 364.20 5.09 -75.75 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.19 Total: 30.99 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 4.31 Total: -40.57 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -1.38 Total: -70.23 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.05 Total: -39.63 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -80.83 5.09 -75.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579802477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.841 kcal (2) G-P(sol) polarization free energy of solvation -80.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds