Wall clock time and date at job start Tue Mar 31 2020 11:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00186 * 2 1 4 4 C 1.53000 * 109.47122 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46738 * 56.80493 * 4 3 2 6 6 C 1.46496 * 120.00438 * 91.12851 * 5 4 3 7 7 C 1.50702 * 109.47489 * 115.21044 * 6 5 4 8 8 H 1.07994 * 119.99548 * 1.32152 * 7 6 5 9 9 C 1.37873 * 119.99589 * 181.31578 * 7 6 5 10 10 N 1.31522 * 119.99243 * 185.04082 * 9 7 6 11 11 Si 1.86799 * 120.00684 * 5.03895 * 9 7 6 12 12 H 1.48497 * 109.46946 * 84.85434 * 11 9 7 13 13 H 1.48494 * 109.47161 * 204.85996 * 11 9 7 14 14 H 1.48502 * 109.46726 * 324.85849 * 11 9 7 15 15 C 1.34777 * 119.99746 * 271.12275 * 5 4 3 16 16 O 1.21576 * 119.99867 * 20.02595 * 15 5 4 17 17 C 1.47683 * 120.00328 * 200.03261 * 15 5 4 18 18 C 1.39770 * 119.95618 * 333.09669 * 17 15 5 19 19 C 1.37671 * 120.02519 * 180.02562 * 18 17 15 20 20 C 1.39491 * 119.83127 * 359.95349 * 19 18 17 21 21 C 1.39831 * 120.19598 * 0.02562 * 20 19 18 22 22 C 1.37474 * 119.99970 * 359.76581 * 21 20 19 23 23 C 1.50605 * 119.35077 * 180.02562 * 21 20 19 24 24 C 1.52746 * 109.82087 * 325.44685 * 23 21 20 25 25 C 1.50323 * 110.71246 * 50.36658 * 24 23 21 26 26 C 1.32634 * 121.07529 * 324.20117 * 25 24 23 27 27 H 1.08993 * 109.47278 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47365 * 300.00326 * 1 2 3 29 29 H 1.09004 * 109.46840 * 60.00131 * 1 2 3 30 30 H 1.09008 * 109.47298 * 59.99314 * 3 2 1 31 31 H 1.09002 * 109.47031 * 299.99943 * 3 2 1 32 32 H 1.08997 * 109.47109 * 296.80060 * 4 3 2 33 33 H 1.08998 * 109.46904 * 176.79592 * 4 3 2 34 34 H 1.09006 * 109.46895 * 355.20900 * 6 5 4 35 35 H 1.09002 * 109.46783 * 235.21298 * 6 5 4 36 36 H 0.96999 * 119.99726 * 180.02562 * 10 9 7 37 37 H 1.07999 * 119.98465 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.08801 * 179.97438 * 19 18 17 39 39 H 1.07994 * 120.06880 * 180.22104 * 22 21 20 40 40 H 1.08992 * 109.41546 * 85.55772 * 23 21 20 41 41 H 1.09005 * 109.41492 * 205.34621 * 23 21 20 42 42 H 1.08990 * 109.23144 * 170.68640 * 24 23 21 43 43 H 1.09004 * 109.22804 * 290.09750 * 24 23 21 44 44 H 1.07999 * 119.46198 * 144.22018 * 25 24 23 45 45 H 1.08005 * 120.25188 * 180.42426 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9630 0.3919 -1.1549 6 6 4.2847 1.0562 -2.4203 7 6 5.7468 0.8645 -2.7309 8 1 6.3690 0.2858 -2.0643 9 6 6.2900 1.4277 -3.8661 10 7 7.5403 1.1791 -4.1897 11 14 5.2503 2.5437 -4.9444 12 1 5.2897 3.9277 -4.4075 13 1 5.7869 2.5344 -6.3290 14 1 3.8476 2.0562 -4.9539 15 6 4.0603 -0.9485 -1.0537 16 8 3.4687 -1.5359 -0.1688 17 6 4.8858 -1.7039 -2.0176 18 6 5.0992 -1.1959 -3.3021 19 6 5.8680 -1.8991 -4.2020 20 6 6.4334 -3.1182 -3.8280 21 6 6.2209 -3.6272 -2.5430 22 6 5.4569 -2.9234 -1.6426 23 6 6.8409 -4.9449 -2.1591 24 6 6.8694 -5.8761 -3.3696 25 6 7.4698 -5.1822 -4.5602 26 6 7.2612 -3.8904 -4.7769 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8607 0.6941 0.9181 33 1 3.9787 2.1787 -0.0568 34 1 4.0675 2.1211 -2.3371 35 1 3.6836 0.6242 -3.2205 36 1 7.9226 1.5756 -4.9881 37 1 4.6609 -0.2514 -3.5888 38 1 6.0333 -1.5078 -5.1950 39 1 5.2950 -3.3137 -0.6487 40 1 7.8586 -4.7776 -1.8068 41 1 6.2539 -5.4034 -1.3632 42 1 7.4639 -6.7577 -3.1304 43 1 5.8516 -6.1838 -3.6098 44 1 8.0808 -5.7447 -5.2506 45 1 7.6935 -3.4067 -5.6404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585762625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:10 Heat of formation + Delta-G solvation = 0.991860 kcal Electronic energy + Delta-G solvation = -27208.602531 eV Core-core repulsion = 23579.037299 eV Total energy + Delta-G solvation = -3629.565231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.82845 -38.46732 -37.24873 -35.70966 -34.83385 -32.95100 -31.65384 -30.80010 -28.79938 -28.56570 -27.58185 -26.01108 -23.77773 -22.82246 -22.70888 -21.61036 -21.01594 -18.70114 -17.86819 -17.30310 -16.34828 -16.08204 -15.69172 -15.38599 -15.24394 -14.86866 -14.57995 -14.24818 -14.08120 -13.56931 -13.43699 -13.34113 -12.88008 -12.58524 -12.50299 -12.30995 -12.11875 -12.05397 -11.69741 -11.58337 -11.40210 -11.20431 -11.05125 -10.92507 -10.75494 -10.56170 -10.43703 -10.06070 -9.90723 -9.49920 -9.31590 -9.24291 -8.90245 -8.73318 -7.73101 -7.65289 -7.21495 -6.48863 -4.26363 1.50988 2.48802 2.89372 3.06382 3.09928 3.13019 3.79898 3.97896 4.03105 4.20518 4.72762 5.06812 5.14625 5.17956 5.34366 5.38714 5.46212 5.54180 5.60618 5.60899 5.63202 5.69241 5.82261 5.83555 5.87275 5.90381 5.96731 6.10884 6.23255 6.24275 6.27206 6.37106 6.43214 6.50494 6.59930 6.79290 6.90369 7.05474 7.09893 7.11663 7.33020 7.46368 7.54344 7.59624 7.64737 7.99035 8.03889 8.34815 8.61583 9.00794 9.20838 10.59046 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.006013 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.257875 B = 4655.391959 C = 6757.725008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.042 3.958 4 C 0.127 3.873 5 N -0.603 5.603 6 C 0.196 3.804 7 C -0.517 4.517 8 H 0.095 0.905 9 C 0.074 3.926 10 N -0.850 5.850 11 Si 0.864 3.136 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.261 1.261 15 C 0.573 3.427 16 O -0.539 6.539 17 C -0.168 4.168 18 C -0.018 4.018 19 C -0.134 4.134 20 C -0.033 4.033 21 C -0.142 4.142 22 C -0.053 4.053 23 C -0.066 4.066 24 C -0.084 4.084 25 C -0.168 4.168 26 C -0.102 4.102 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.272 0.728 37 H 0.179 0.821 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -3.519 1.163 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C -0.036 4.036 4 C 0.003 3.997 5 N -0.335 5.335 6 C 0.075 3.925 7 C -0.553 4.553 8 H 0.113 0.887 9 C -0.135 4.135 10 N -0.482 5.482 11 Si 0.690 3.310 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.185 1.185 15 C 0.364 3.636 16 O -0.417 6.417 17 C -0.171 4.171 18 C -0.036 4.036 19 C -0.152 4.152 20 C -0.033 4.033 21 C -0.143 4.143 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.121 4.121 25 C -0.186 4.186 26 C -0.120 4.120 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.195 0.805 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.125 0.875 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.764 -3.928 1.500 7.134 hybrid contribution -0.244 1.251 -0.775 1.492 sum -6.008 -2.677 0.724 6.617 Atomic orbital electron populations 1.22673 0.82929 1.02167 0.98855 1.88281 1.17713 1.26167 1.95017 1.23053 0.95582 0.85675 0.99309 1.21364 0.91367 0.96519 0.90410 1.47504 1.67607 1.05943 1.12461 1.20187 0.96488 0.93493 0.82348 1.21453 0.92917 1.31824 1.09106 0.88738 1.24946 0.95205 0.96015 0.97302 1.69895 1.12988 1.40347 1.25013 0.87026 0.81312 0.82156 0.80538 1.19399 1.20413 1.18511 1.18244 0.79528 0.81552 0.84317 1.90688 1.44744 1.68779 1.37489 1.19615 1.04863 0.96846 0.95824 1.22725 0.94716 0.94410 0.91798 1.20778 1.00785 0.93887 0.99772 1.18878 0.96704 0.94817 0.92943 1.19334 1.03319 0.97419 0.94200 1.20579 0.95394 0.93070 0.98195 1.20218 1.00330 0.92807 0.96984 1.20340 1.00569 0.97604 0.93636 1.23026 1.01111 0.95716 0.98743 1.21762 0.97790 0.94271 0.98179 0.90141 0.94952 0.94912 0.93500 0.93756 0.90474 0.89279 0.94549 0.94638 0.91739 0.80463 0.87122 0.86875 0.91706 0.91359 0.91585 0.91216 0.87504 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.35 -6.41 8.35 -56.17 -0.47 -6.88 16 3 C 0.04 0.65 6.33 37.16 0.24 0.88 16 4 C 0.13 2.18 5.87 -4.04 -0.02 2.16 16 5 N -0.60 -12.46 2.54 -176.85 -0.45 -12.91 16 6 C 0.20 4.11 4.02 -5.20 -0.02 4.09 16 7 C -0.52 -12.35 5.57 -34.44 -0.19 -12.54 16 8 H 0.09 2.62 6.98 -52.49 -0.37 2.25 16 9 C 0.07 1.77 4.91 -17.82 -0.09 1.69 16 10 N -0.85 -22.07 13.96 55.43 0.77 -21.29 16 11 Si 0.86 17.90 27.20 -169.99 -4.62 13.28 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 14 H -0.26 -5.13 6.76 56.52 0.38 -4.75 16 15 C 0.57 13.01 6.99 -12.40 -0.09 12.92 16 16 O -0.54 -13.04 14.68 -15.64 -0.23 -13.27 16 17 C -0.17 -3.79 4.94 -104.89 -0.52 -4.31 16 18 C -0.02 -0.41 5.83 -39.22 -0.23 -0.64 16 19 C -0.13 -2.87 9.79 -39.32 -0.39 -3.26 16 20 C -0.03 -0.67 5.78 -104.96 -0.61 -1.27 16 21 C -0.14 -2.79 5.67 -104.35 -0.59 -3.38 16 22 C -0.05 -1.13 9.24 -39.28 -0.36 -1.49 16 23 C -0.07 -1.05 5.95 -28.06 -0.17 -1.21 16 24 C -0.08 -1.16 6.05 -28.20 -0.17 -1.33 16 25 C -0.17 -2.45 10.03 -36.39 -0.36 -2.82 16 26 C -0.10 -1.75 9.90 -37.61 -0.37 -2.12 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.37 7.80 -51.93 -0.41 0.96 16 33 H 0.09 1.32 7.94 -51.93 -0.41 0.91 16 34 H 0.04 0.71 7.03 -51.93 -0.36 0.34 16 35 H 0.04 0.76 5.69 -51.93 -0.30 0.46 16 36 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.18 4.01 2.22 -55.81 -0.12 3.88 16 38 H 0.11 2.31 8.06 -52.49 -0.42 1.88 16 39 H 0.11 2.30 7.87 -52.49 -0.41 1.89 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -28.95 356.79 -9.06 -38.01 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.60 Total: 8.80 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.83 Total: -11.12 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.32 Total: -34.20 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.70 Total: -20.15 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.62 Total: 13.28 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.95 -9.06 -38.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585762625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.998 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds