Wall clock time and date at job start Tue Mar 31 2020 11:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00186 * 2 1 4 4 C 1.53000 * 109.47122 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46738 * 56.80493 * 4 3 2 6 6 C 1.46496 * 120.00438 * 91.12851 * 5 4 3 7 7 C 1.50702 * 109.47489 * 115.21044 * 6 5 4 8 8 H 1.07994 * 119.99548 * 1.32152 * 7 6 5 9 9 C 1.37873 * 119.99589 * 181.31578 * 7 6 5 10 10 N 1.31522 * 119.99243 * 185.04082 * 9 7 6 11 11 Si 1.86799 * 120.00684 * 5.03895 * 9 7 6 12 12 H 1.48497 * 109.46946 * 84.85434 * 11 9 7 13 13 H 1.48494 * 109.47161 * 204.85996 * 11 9 7 14 14 H 1.48502 * 109.46726 * 324.85849 * 11 9 7 15 15 C 1.34777 * 119.99746 * 271.12275 * 5 4 3 16 16 O 1.21576 * 119.99867 * 20.02595 * 15 5 4 17 17 C 1.47683 * 120.00328 * 200.03261 * 15 5 4 18 18 C 1.39770 * 119.95618 * 333.09669 * 17 15 5 19 19 C 1.37671 * 120.02519 * 180.02562 * 18 17 15 20 20 C 1.39491 * 119.83127 * 359.95349 * 19 18 17 21 21 C 1.39831 * 120.19598 * 0.02562 * 20 19 18 22 22 C 1.37474 * 119.99970 * 359.76581 * 21 20 19 23 23 C 1.50605 * 119.35077 * 180.02562 * 21 20 19 24 24 C 1.52746 * 109.82087 * 325.44685 * 23 21 20 25 25 C 1.50323 * 110.71246 * 50.36658 * 24 23 21 26 26 C 1.32634 * 121.07529 * 324.20117 * 25 24 23 27 27 H 1.08993 * 109.47278 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47365 * 300.00326 * 1 2 3 29 29 H 1.09004 * 109.46840 * 60.00131 * 1 2 3 30 30 H 1.09008 * 109.47298 * 59.99314 * 3 2 1 31 31 H 1.09002 * 109.47031 * 299.99943 * 3 2 1 32 32 H 1.08997 * 109.47109 * 296.80060 * 4 3 2 33 33 H 1.08998 * 109.46904 * 176.79592 * 4 3 2 34 34 H 1.09006 * 109.46895 * 355.20900 * 6 5 4 35 35 H 1.09002 * 109.46783 * 235.21298 * 6 5 4 36 36 H 0.96999 * 119.99726 * 180.02562 * 10 9 7 37 37 H 1.07999 * 119.98465 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.08801 * 179.97438 * 19 18 17 39 39 H 1.07994 * 120.06880 * 180.22104 * 22 21 20 40 40 H 1.08992 * 109.41546 * 85.55772 * 23 21 20 41 41 H 1.09005 * 109.41492 * 205.34621 * 23 21 20 42 42 H 1.08990 * 109.23144 * 170.68640 * 24 23 21 43 43 H 1.09004 * 109.22804 * 290.09750 * 24 23 21 44 44 H 1.07999 * 119.46198 * 144.22018 * 25 24 23 45 45 H 1.08005 * 120.25188 * 180.42426 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9630 0.3919 -1.1549 6 6 4.2847 1.0562 -2.4203 7 6 5.7468 0.8645 -2.7309 8 1 6.3690 0.2858 -2.0643 9 6 6.2900 1.4277 -3.8661 10 7 7.5403 1.1791 -4.1897 11 14 5.2503 2.5437 -4.9444 12 1 5.2897 3.9277 -4.4075 13 1 5.7869 2.5344 -6.3290 14 1 3.8476 2.0562 -4.9539 15 6 4.0603 -0.9485 -1.0537 16 8 3.4687 -1.5359 -0.1688 17 6 4.8858 -1.7039 -2.0176 18 6 5.0992 -1.1959 -3.3021 19 6 5.8680 -1.8991 -4.2020 20 6 6.4334 -3.1182 -3.8280 21 6 6.2209 -3.6272 -2.5430 22 6 5.4569 -2.9234 -1.6426 23 6 6.8409 -4.9449 -2.1591 24 6 6.8694 -5.8761 -3.3696 25 6 7.4698 -5.1822 -4.5602 26 6 7.2612 -3.8904 -4.7769 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8607 0.6941 0.9181 33 1 3.9787 2.1787 -0.0568 34 1 4.0675 2.1211 -2.3371 35 1 3.6836 0.6242 -3.2205 36 1 7.9226 1.5756 -4.9881 37 1 4.6609 -0.2514 -3.5888 38 1 6.0333 -1.5078 -5.1950 39 1 5.2950 -3.3137 -0.6487 40 1 7.8586 -4.7776 -1.8068 41 1 6.2539 -5.4034 -1.3632 42 1 7.4639 -6.7577 -3.1304 43 1 5.8516 -6.1838 -3.6098 44 1 8.0808 -5.7447 -5.2506 45 1 7.6935 -3.4067 -5.6404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585762625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:09 Heat of formation + Delta-G solvation = -13.823750 kcal Electronic energy + Delta-G solvation = -27209.244984 eV Core-core repulsion = 23579.037299 eV Total energy + Delta-G solvation = -3630.207684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46797 -39.95211 -38.53365 -37.40509 -36.30174 -34.69001 -33.11730 -32.30607 -30.33653 -30.02993 -29.16366 -27.15759 -25.25415 -24.50471 -24.11317 -23.04207 -22.59190 -20.28494 -19.37679 -19.06999 -17.80538 -17.51449 -17.10153 -16.80186 -16.63528 -16.39030 -15.98362 -15.73192 -15.49398 -15.09641 -14.97793 -14.88415 -14.60470 -14.14061 -13.94260 -13.62239 -13.56351 -13.36930 -13.14123 -12.99502 -12.85045 -12.64433 -12.55070 -12.38847 -12.10584 -11.98162 -11.90418 -11.74031 -11.39913 -11.15548 -10.85696 -10.57985 -10.53182 -10.38465 -9.37762 -9.31806 -8.73800 -8.33206 -6.15666 -0.02761 0.83820 1.37154 1.42312 1.48636 1.49902 2.18157 2.29804 2.38492 2.96296 3.05026 3.36452 3.82394 3.92315 3.99125 4.16505 4.19323 4.24436 4.28028 4.39268 4.42392 4.52730 4.55714 4.57531 4.59568 4.62614 4.69873 4.71226 4.80522 4.84932 4.87266 4.96477 5.00427 5.07429 5.23232 5.24967 5.28434 5.46742 5.53152 5.69448 5.74571 5.87024 5.93216 6.10510 6.19315 6.36939 6.44336 6.57859 6.71761 7.15773 7.48409 8.78391 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.006013 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.257875 B = 4655.391959 C = 6757.725008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.045 3.955 4 C 0.118 3.882 5 N -0.603 5.603 6 C 0.203 3.797 7 C -0.511 4.511 8 H 0.045 0.955 9 C 0.034 3.966 10 N -0.898 5.898 11 Si 0.921 3.079 12 H -0.259 1.259 13 H -0.284 1.284 14 H -0.242 1.242 15 C 0.566 3.434 16 O -0.562 6.562 17 C -0.193 4.193 18 C -0.027 4.027 19 C -0.154 4.154 20 C -0.036 4.036 21 C -0.146 4.146 22 C -0.068 4.068 23 C -0.068 4.068 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.272 0.728 37 H 0.174 0.826 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.143 0.857 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -4.265 0.707 7.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.033 4.033 4 C -0.005 4.005 5 N -0.334 5.334 6 C 0.081 3.919 7 C -0.547 4.547 8 H 0.063 0.937 9 C -0.170 4.170 10 N -0.533 5.533 11 Si 0.744 3.256 12 H -0.184 1.184 13 H -0.209 1.209 14 H -0.165 1.165 15 C 0.358 3.642 16 O -0.442 6.442 17 C -0.196 4.196 18 C -0.045 4.045 19 C -0.173 4.173 20 C -0.036 4.036 21 C -0.146 4.146 22 C -0.087 4.087 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.164 4.164 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.191 0.809 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.161 0.839 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.620 -4.657 1.064 8.164 hybrid contribution 0.078 1.277 -0.573 1.402 sum -6.542 -3.380 0.491 7.380 Atomic orbital electron populations 1.22818 0.80918 1.02717 1.00455 1.88224 1.20123 1.27826 1.95381 1.23069 0.93718 0.85201 1.01285 1.21673 0.93400 0.96907 0.88506 1.47568 1.66945 1.05589 1.13292 1.20089 0.94438 0.94677 0.82653 1.21260 0.93810 1.31296 1.08379 0.93717 1.25577 0.96007 0.97095 0.98311 1.70027 1.15058 1.42314 1.25908 0.86112 0.80614 0.80515 0.78362 1.18374 1.20933 1.16478 1.18365 0.79414 0.82382 0.84089 1.90651 1.45820 1.69340 1.38412 1.19846 1.05816 0.97794 0.96158 1.22713 0.95048 0.94743 0.91994 1.20901 1.01604 0.95063 0.99748 1.19280 0.96048 0.94409 0.93889 1.19841 1.02336 0.98897 0.93575 1.20788 0.96063 0.93101 0.98766 1.20331 1.00326 0.91154 0.98665 1.20484 1.01709 0.98153 0.92133 1.23503 0.98172 0.94659 0.98389 1.21773 1.00122 0.95545 0.98933 0.90268 0.92713 0.93803 0.90320 0.92726 0.91707 0.86848 0.92142 0.94507 0.91879 0.80932 0.87409 0.86665 0.91269 0.89804 0.87745 0.90548 0.83908 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -14.07 8.35 -128.96 -1.08 -15.14 16 3 C 0.04 1.30 6.33 71.98 0.46 1.76 16 4 C 0.12 3.97 5.87 86.38 0.51 4.48 16 5 N -0.60 -25.24 2.54 -831.70 -2.11 -27.35 16 6 C 0.20 8.51 4.02 85.63 0.34 8.85 16 7 C -0.51 -25.24 5.57 25.60 0.14 -25.10 16 8 H 0.04 2.63 6.98 -2.91 -0.02 2.61 16 9 C 0.03 1.68 4.91 84.65 0.42 2.09 16 10 N -0.90 -48.52 13.96 21.45 0.30 -48.22 16 11 Si 0.92 36.63 27.20 68.60 1.87 38.49 16 12 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 13 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 14 H -0.24 -8.78 6.76 99.48 0.67 -8.10 16 15 C 0.57 26.67 6.99 86.74 0.61 27.27 16 16 O -0.56 -28.08 14.68 16.06 0.24 -27.84 16 17 C -0.19 -9.11 4.94 -20.04 -0.10 -9.21 16 18 C -0.03 -1.27 5.83 22.51 0.13 -1.14 16 19 C -0.15 -6.95 9.79 22.44 0.22 -6.73 16 20 C -0.04 -1.47 5.78 -20.09 -0.12 -1.59 16 21 C -0.15 -5.77 5.67 -19.69 -0.11 -5.88 16 22 C -0.07 -2.99 9.24 22.46 0.21 -2.78 16 23 C -0.07 -2.01 5.95 29.73 0.18 -1.83 16 24 C -0.09 -2.09 6.05 29.65 0.18 -1.91 16 25 C -0.13 -3.34 10.03 24.40 0.24 -3.09 16 26 C -0.15 -4.85 9.90 23.61 0.23 -4.61 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 2.33 7.80 -2.39 -0.02 2.31 16 33 H 0.11 3.19 7.94 -2.39 -0.02 3.18 16 34 H 0.06 2.24 7.03 -2.38 -0.02 2.22 16 35 H 0.04 1.57 5.69 -2.39 -0.01 1.55 16 36 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.17 8.10 2.22 -6.03 -0.01 8.08 16 38 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 39 H 0.12 4.86 7.87 -2.91 -0.02 4.84 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.22 8.07 -2.38 -0.02 2.20 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 45 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -66.48 356.79 4.94 -61.54 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.95 Total: 35.99 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.79 Total: -17.47 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -1.81 Total: -75.57 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.84 Total: -42.98 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 1.87 Total: 38.49 kcal Total: -66.48 4.94 -61.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585762625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.717 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds