Wall clock time and date at job start Tue Mar 31 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00399 * 2 1 4 4 H 1.48494 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46980 * 300.00324 * 3 2 1 6 6 H 1.48496 * 109.47004 * 59.99827 * 3 2 1 7 7 C 1.38954 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00245 * 195.17572 * 7 2 1 9 9 N 1.37102 * 119.99804 * 15.17845 * 7 2 1 10 10 C 1.34778 * 119.99938 * 42.59257 * 9 7 2 11 11 O 1.21290 * 120.00108 * 3.54116 * 10 9 7 12 12 C 1.50697 * 119.99953 * 183.53859 * 10 9 7 13 13 H 1.09000 * 109.63692 * 305.33438 * 12 10 9 14 14 C 1.53315 * 109.63732 * 184.92855 * 12 10 9 15 15 C 1.52803 * 108.51215 * 170.50726 * 14 12 10 16 16 C 1.50445 * 110.44887 * 51.04798 * 15 14 12 17 17 N 1.32883 * 118.53304 * 162.51791 * 16 15 14 18 18 C 1.31606 * 121.06494 * 179.71637 * 17 16 15 19 19 N 1.31815 * 121.66480 * 359.91011 * 18 17 16 20 20 C 1.32178 * 120.64646 * 0.10300 * 19 18 17 21 21 C 1.37767 * 122.57819 * 342.29290 * 16 15 14 22 22 C 1.50347 * 122.80392 * 0.59390 * 21 16 15 23 23 C 1.46492 * 119.99898 * 222.59309 * 9 7 2 24 24 C 1.54267 * 110.03292 * 52.94854 * 23 9 7 25 25 C 1.54892 * 104.19681 * 217.10107 * 24 23 9 26 26 C 1.54893 * 102.74607 * 37.94734 * 25 24 23 27 27 C 1.53881 * 110.03417 * 295.78317 * 23 9 7 28 28 H 0.96999 * 119.99884 * 4.97069 * 1 2 3 29 29 H 1.08997 * 109.62448 * 50.80142 * 14 12 10 30 30 H 1.08994 * 109.63042 * 290.21980 * 14 12 10 31 31 H 1.08993 * 109.31384 * 290.74520 * 15 14 12 32 32 H 1.09000 * 109.14843 * 171.23923 * 15 14 12 33 33 H 1.08000 * 119.17046 * 179.88117 * 18 17 16 34 34 H 1.08003 * 120.36643 * 180.02562 * 20 19 18 35 35 H 1.08997 * 109.30968 * 222.17637 * 22 21 16 36 36 H 1.09004 * 109.14626 * 102.67350 * 22 21 16 37 37 H 1.09001 * 110.01993 * 174.38902 * 23 9 7 38 38 H 1.08997 * 110.48437 * 335.78619 * 24 23 9 39 39 H 1.09000 * 110.48487 * 98.42523 * 24 23 9 40 40 H 1.08991 * 110.75922 * 279.63117 * 25 24 23 41 41 H 1.09001 * 110.75320 * 156.25647 * 25 24 23 42 42 H 1.09004 * 110.48565 * 203.37888 * 26 25 24 43 43 H 1.08995 * 110.48728 * 80.73233 * 26 25 24 44 44 H 1.09000 * 110.03121 * 238.57114 * 27 23 9 45 45 H 1.08994 * 110.02906 * 359.97438 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0605 -1.2196 0.2454 9 7 1.3591 -2.3701 -0.3098 10 6 0.4877 -2.4034 -1.3375 11 8 0.3262 -1.4192 -2.0277 12 6 -0.2858 -3.6634 -1.6290 13 1 0.4054 -4.4969 -1.7539 14 6 -1.1073 -3.4789 -2.9103 15 6 -1.6897 -4.8332 -3.3124 16 6 -2.3952 -5.4693 -2.1458 17 7 -3.2500 -6.4585 -2.3836 18 6 -3.8901 -7.0540 -1.3999 19 7 -3.7117 -6.6990 -0.1430 20 6 -2.8771 -5.7228 0.1693 21 6 -2.1857 -5.0691 -0.8443 22 6 -1.2455 -3.9552 -0.4759 23 6 1.6121 -3.5806 0.4756 24 6 1.4090 -3.2886 1.9767 25 6 2.5096 -4.1226 2.6782 26 6 3.7126 -3.9818 1.7128 27 6 3.0768 -4.0214 0.3078 28 1 -0.4850 0.8369 -0.0728 29 1 -0.4639 -3.1058 -3.7071 30 1 -1.9165 -2.7719 -2.7278 31 1 -0.8842 -5.4871 -3.6465 32 1 -2.3988 -4.6895 -4.1276 33 1 -4.5795 -7.8534 -1.6282 34 1 -2.7340 -5.4359 1.2007 35 1 -0.6728 -4.2436 0.4055 36 1 -1.8236 -3.0585 -0.2525 37 1 0.9428 -4.3794 0.1560 38 1 1.5466 -2.2268 2.1807 39 1 0.4199 -3.6148 2.2983 40 1 2.2060 -5.1656 2.7675 41 1 2.7477 -3.7034 3.6558 42 1 4.4047 -4.8140 1.8418 43 1 4.2222 -3.0320 1.8743 44 1 3.1183 -5.0343 -0.0925 45 1 3.5993 -3.3349 -0.3584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592599438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:49 Heat of formation + Delta-G solvation = 8.629134 kcal Electronic energy + Delta-G solvation = -27654.359227 eV Core-core repulsion = 24057.417924 eV Total energy + Delta-G solvation = -3596.941303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24228 -39.22310 -37.18920 -35.94338 -33.93779 -33.32603 -31.64621 -31.11340 -29.89221 -28.10591 -26.89015 -25.46158 -24.63440 -23.49681 -22.80633 -20.72044 -20.09668 -19.68082 -18.82076 -17.57336 -16.83244 -16.37367 -16.01499 -15.20033 -15.08308 -14.79348 -14.35550 -14.27327 -13.86764 -13.67117 -13.43063 -13.34546 -13.07012 -12.76561 -12.62697 -12.40842 -11.89452 -11.53517 -11.39937 -11.06650 -10.94576 -10.82491 -10.71962 -10.64816 -10.56863 -10.48750 -10.46725 -10.39523 -10.22396 -10.15843 -10.09813 -9.77018 -9.10160 -9.01204 -8.73893 -8.00053 -7.07320 -6.07751 -3.84753 1.00867 1.11247 3.30107 3.39572 3.40846 3.81619 4.08451 4.14081 4.26673 4.35382 4.55391 4.81370 4.92545 4.95253 5.13676 5.18984 5.23443 5.27577 5.38828 5.47148 5.52949 5.65688 5.71100 5.75902 5.85701 5.89703 5.93956 6.03195 6.09573 6.11591 6.18906 6.20352 6.29760 6.38170 6.40625 6.43217 6.45553 6.56917 6.65204 6.71829 6.78134 6.91873 7.06386 7.16942 7.65488 8.14364 8.29656 9.09591 9.20427 9.69897 10.33044 10.99204 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.005021 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.526707 B = 5575.122908 C = 6634.124849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.331 4.331 8 H 0.076 0.924 9 N -0.449 5.449 10 C 0.485 3.515 11 O -0.531 6.531 12 C -0.103 4.103 13 H 0.077 0.923 14 C -0.094 4.094 15 C -0.073 4.073 16 C 0.179 3.821 17 N -0.524 5.524 18 C 0.277 3.723 19 N -0.525 5.525 20 C 0.145 3.855 21 C -0.165 4.165 22 C -0.068 4.068 23 C 0.123 3.877 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.133 4.133 28 H 0.261 0.739 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.191 0.809 34 H 0.167 0.833 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 -11.747 0.994 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.458 4.458 8 H 0.094 0.906 9 N -0.171 5.171 10 C 0.271 3.729 11 O -0.408 6.408 12 C -0.125 4.125 13 H 0.095 0.905 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.035 3.965 17 N -0.238 5.238 18 C -0.011 4.011 19 N -0.239 5.239 20 C -0.022 4.022 21 C -0.169 4.169 22 C -0.106 4.106 23 C 0.018 3.982 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.155 4.155 27 C -0.172 4.172 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.208 0.792 34 H 0.184 0.816 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.276 -11.851 0.464 12.076 hybrid contribution 0.792 1.323 0.355 1.582 sum -1.485 -10.527 0.819 10.663 Atomic orbital electron populations 1.69836 1.06263 1.27320 1.43386 1.25134 0.94784 0.99040 0.95152 0.86294 0.79881 0.83405 0.77382 1.19716 1.20880 1.21377 1.18864 0.92942 0.83715 1.50291 0.90597 1.43370 1.40467 1.07840 1.25394 1.19612 0.83399 0.87987 0.81894 1.90518 1.65627 1.35807 1.48839 1.21298 0.96742 0.99050 0.95387 0.90457 1.21348 0.99883 0.94562 0.97468 1.20517 0.99395 0.96917 0.94212 1.21428 0.90880 0.90151 0.94009 1.68363 1.08370 1.09136 1.37928 1.24776 0.95503 0.97026 0.83791 1.68364 1.17948 1.15138 1.22451 1.23289 0.89292 0.89432 1.00188 1.21401 1.00621 1.00173 0.94686 1.20537 0.95609 0.95735 0.98764 1.21852 0.94826 0.89388 0.92118 1.22654 0.96796 1.02392 0.94500 1.22452 0.96310 0.99264 0.98137 1.22262 0.97134 1.00911 0.95207 1.22513 0.97281 1.00140 0.97268 0.92829 0.89915 0.90949 0.89420 0.89353 0.79229 0.81559 0.89307 0.88789 0.90976 0.88879 0.92997 0.92515 0.92296 0.92921 0.91633 0.92996 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.29 11.46 55.50 0.64 -22.65 16 2 C 0.07 1.82 4.49 -17.47 -0.08 1.74 16 3 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.33 -8.39 7.25 -14.93 -0.11 -8.50 16 8 H 0.08 1.90 7.48 -52.49 -0.39 1.51 16 9 N -0.45 -10.12 2.44 -106.54 -0.26 -10.38 16 10 C 0.48 11.19 6.16 -10.99 -0.07 11.12 16 11 O -0.53 -14.59 13.60 5.55 0.08 -14.52 16 12 C -0.10 -1.81 1.67 -91.70 -0.15 -1.96 16 13 H 0.08 1.25 7.43 -51.93 -0.39 0.86 16 14 C -0.09 -1.54 4.66 -26.67 -0.12 -1.67 16 15 C -0.07 -0.98 5.96 -28.11 -0.17 -1.15 16 16 C 0.18 2.63 6.62 -82.43 -0.55 2.08 16 17 N -0.52 -7.54 10.32 -11.00 -0.11 -7.65 16 18 C 0.28 3.60 12.29 -92.30 -1.13 2.46 16 19 N -0.53 -7.26 10.44 -14.54 -0.15 -7.41 16 20 C 0.14 1.95 10.94 -17.11 -0.19 1.77 16 21 C -0.16 -2.40 5.73 -104.67 -0.60 -3.00 16 22 C -0.07 -1.09 4.62 -28.14 -0.13 -1.22 16 23 C 0.12 2.21 2.42 -66.81 -0.16 2.04 16 24 C -0.13 -2.14 6.31 -25.07 -0.16 -2.30 16 25 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 26 C -0.12 -1.69 6.83 -25.07 -0.17 -1.86 16 27 C -0.13 -2.16 6.25 -25.61 -0.16 -2.32 16 28 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 29 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 30 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.09 1.35 5.15 -51.93 -0.27 1.09 16 36 H 0.09 1.73 8.11 -51.93 -0.42 1.31 16 37 H 0.07 1.18 4.17 -51.93 -0.22 0.96 16 38 H 0.09 1.91 6.84 -51.93 -0.36 1.56 16 39 H 0.05 0.82 7.75 -51.93 -0.40 0.42 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.35 7.30 -51.93 -0.38 0.98 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -30.83 349.91 -10.28 -41.11 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.59 Total: 4.75 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -4.12 Total: -4.66 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.11 Total: -48.09 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.08 Total: -14.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.83 -10.28 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592599438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.742 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds