Wall clock time and date at job start Tue Mar 31 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00399 * 2 1 4 4 H 1.48494 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46980 * 300.00324 * 3 2 1 6 6 H 1.48496 * 109.47004 * 59.99827 * 3 2 1 7 7 C 1.38954 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00245 * 195.17572 * 7 2 1 9 9 N 1.37102 * 119.99804 * 15.17845 * 7 2 1 10 10 C 1.34778 * 119.99938 * 42.59257 * 9 7 2 11 11 O 1.21290 * 120.00108 * 3.54116 * 10 9 7 12 12 C 1.50697 * 119.99953 * 183.53859 * 10 9 7 13 13 H 1.09000 * 109.63692 * 305.33438 * 12 10 9 14 14 C 1.53315 * 109.63732 * 184.92855 * 12 10 9 15 15 C 1.52803 * 108.51215 * 170.50726 * 14 12 10 16 16 C 1.50445 * 110.44887 * 51.04798 * 15 14 12 17 17 N 1.32883 * 118.53304 * 162.51791 * 16 15 14 18 18 C 1.31606 * 121.06494 * 179.71637 * 17 16 15 19 19 N 1.31815 * 121.66480 * 359.91011 * 18 17 16 20 20 C 1.32178 * 120.64646 * 0.10300 * 19 18 17 21 21 C 1.37767 * 122.57819 * 342.29290 * 16 15 14 22 22 C 1.50347 * 122.80392 * 0.59390 * 21 16 15 23 23 C 1.46492 * 119.99898 * 222.59309 * 9 7 2 24 24 C 1.54267 * 110.03292 * 52.94854 * 23 9 7 25 25 C 1.54892 * 104.19681 * 217.10107 * 24 23 9 26 26 C 1.54893 * 102.74607 * 37.94734 * 25 24 23 27 27 C 1.53881 * 110.03417 * 295.78317 * 23 9 7 28 28 H 0.96999 * 119.99884 * 4.97069 * 1 2 3 29 29 H 1.08997 * 109.62448 * 50.80142 * 14 12 10 30 30 H 1.08994 * 109.63042 * 290.21980 * 14 12 10 31 31 H 1.08993 * 109.31384 * 290.74520 * 15 14 12 32 32 H 1.09000 * 109.14843 * 171.23923 * 15 14 12 33 33 H 1.08000 * 119.17046 * 179.88117 * 18 17 16 34 34 H 1.08003 * 120.36643 * 180.02562 * 20 19 18 35 35 H 1.08997 * 109.30968 * 222.17637 * 22 21 16 36 36 H 1.09004 * 109.14626 * 102.67350 * 22 21 16 37 37 H 1.09001 * 110.01993 * 174.38902 * 23 9 7 38 38 H 1.08997 * 110.48437 * 335.78619 * 24 23 9 39 39 H 1.09000 * 110.48487 * 98.42523 * 24 23 9 40 40 H 1.08991 * 110.75922 * 279.63117 * 25 24 23 41 41 H 1.09001 * 110.75320 * 156.25647 * 25 24 23 42 42 H 1.09004 * 110.48565 * 203.37888 * 26 25 24 43 43 H 1.08995 * 110.48728 * 80.73233 * 26 25 24 44 44 H 1.09000 * 110.03121 * 238.57114 * 27 23 9 45 45 H 1.08994 * 110.02906 * 359.97438 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0605 -1.2196 0.2454 9 7 1.3591 -2.3701 -0.3098 10 6 0.4877 -2.4034 -1.3375 11 8 0.3262 -1.4192 -2.0277 12 6 -0.2858 -3.6634 -1.6290 13 1 0.4054 -4.4969 -1.7539 14 6 -1.1073 -3.4789 -2.9103 15 6 -1.6897 -4.8332 -3.3124 16 6 -2.3952 -5.4693 -2.1458 17 7 -3.2500 -6.4585 -2.3836 18 6 -3.8901 -7.0540 -1.3999 19 7 -3.7117 -6.6990 -0.1430 20 6 -2.8771 -5.7228 0.1693 21 6 -2.1857 -5.0691 -0.8443 22 6 -1.2455 -3.9552 -0.4759 23 6 1.6121 -3.5806 0.4756 24 6 1.4090 -3.2886 1.9767 25 6 2.5096 -4.1226 2.6782 26 6 3.7126 -3.9818 1.7128 27 6 3.0768 -4.0214 0.3078 28 1 -0.4850 0.8369 -0.0728 29 1 -0.4639 -3.1058 -3.7071 30 1 -1.9165 -2.7719 -2.7278 31 1 -0.8842 -5.4871 -3.6465 32 1 -2.3988 -4.6895 -4.1276 33 1 -4.5795 -7.8534 -1.6282 34 1 -2.7340 -5.4359 1.2007 35 1 -0.6728 -4.2436 0.4055 36 1 -1.8236 -3.0585 -0.2525 37 1 0.9428 -4.3794 0.1560 38 1 1.5466 -2.2268 2.1807 39 1 0.4199 -3.6148 2.2983 40 1 2.2060 -5.1656 2.7675 41 1 2.7477 -3.7034 3.6558 42 1 4.4047 -4.8140 1.8418 43 1 4.2222 -3.0320 1.8743 44 1 3.1183 -5.0343 -0.0925 45 1 3.5993 -3.3349 -0.3584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592599438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:48 Heat of formation + Delta-G solvation = -7.825198 kcal Electronic energy + Delta-G solvation = -27655.072741 eV Core-core repulsion = 24057.417924 eV Total energy + Delta-G solvation = -3597.654816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35900 -40.79290 -38.56722 -37.41395 -35.11183 -35.05302 -33.43159 -32.33155 -31.21464 -29.39451 -28.36485 -27.05288 -25.92433 -24.88148 -23.96083 -22.18670 -21.32887 -21.11243 -20.39911 -18.80768 -18.03140 -17.82672 -17.58652 -16.80075 -16.53911 -16.08863 -15.86862 -15.65732 -15.10429 -15.09743 -14.78958 -14.59448 -14.45257 -14.07929 -13.95366 -13.91757 -13.35240 -13.10433 -12.87216 -12.83884 -12.47862 -12.44430 -12.20104 -12.05213 -12.04707 -11.88117 -11.81798 -11.70828 -11.67441 -11.35370 -11.31239 -11.21491 -10.68635 -10.19402 -10.14435 -9.85482 -8.96638 -8.09305 -5.87159 -0.05527 0.04183 1.38238 1.44517 1.51409 2.33100 2.53250 2.76491 3.05110 3.16032 3.29324 3.33202 3.51644 3.68025 3.70886 3.88209 3.92065 3.98400 4.10857 4.29068 4.30205 4.40109 4.47347 4.53628 4.58545 4.64373 4.71029 4.76604 4.85511 4.87479 4.89010 4.97642 4.98694 5.13646 5.17066 5.19185 5.22469 5.33084 5.35410 5.47381 5.51428 5.58986 5.63111 5.75248 5.99728 6.31080 7.10210 7.14697 7.33349 7.83343 8.48977 8.96313 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.005021 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.526707 B = 5575.122908 C = 6634.124849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.329 4.329 8 H 0.073 0.927 9 N -0.459 5.459 10 C 0.472 3.528 11 O -0.586 6.586 12 C -0.093 4.093 13 H 0.101 0.899 14 C -0.087 4.087 15 C -0.062 4.062 16 C 0.172 3.828 17 N -0.535 5.535 18 C 0.280 3.720 19 N -0.535 5.535 20 C 0.151 3.849 21 C -0.177 4.177 22 C -0.051 4.051 23 C 0.117 3.883 24 C -0.125 4.125 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.131 4.131 28 H 0.253 0.747 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.225 0.775 34 H 0.188 0.812 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -15.049 1.782 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.457 4.457 8 H 0.091 0.909 9 N -0.180 5.180 10 C 0.260 3.740 11 O -0.467 6.467 12 C -0.115 4.115 13 H 0.119 0.881 14 C -0.126 4.126 15 C -0.099 4.099 16 C 0.029 3.971 17 N -0.249 5.249 18 C -0.007 4.007 19 N -0.248 5.248 20 C -0.016 4.016 21 C -0.181 4.181 22 C -0.090 4.090 23 C 0.013 3.987 24 C -0.164 4.164 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.170 4.170 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.241 0.759 34 H 0.205 0.795 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.949 -15.184 1.285 15.362 hybrid contribution 0.701 2.281 0.098 2.388 sum -1.248 -12.903 1.384 13.037 Atomic orbital electron populations 1.69944 1.07397 1.27102 1.45773 1.25808 0.95380 1.01762 0.95552 0.85509 0.79484 0.80343 0.76708 1.18452 1.22532 1.20623 1.18997 0.92944 0.85010 1.48771 0.90899 1.43599 1.39943 1.08549 1.25881 1.20541 0.83157 0.89118 0.81159 1.90477 1.67223 1.38274 1.50706 1.21204 0.96968 0.96702 0.96617 0.88115 1.21222 0.98755 0.95955 0.96633 1.20426 1.00122 0.95116 0.94275 1.21554 0.91036 0.90402 0.94117 1.68430 1.08689 1.09361 1.38415 1.25514 0.94961 0.96962 0.83301 1.68480 1.18131 1.15333 1.22893 1.23623 0.88338 0.88729 1.00940 1.21193 1.01389 1.00285 0.95258 1.20260 0.95234 0.95172 0.98308 1.22149 0.96666 0.87843 0.92051 1.22588 0.98834 1.00523 0.94436 1.22422 0.94429 1.00183 0.97930 1.22256 0.97700 1.01286 0.93990 1.22489 0.95512 1.00862 0.98111 0.93778 0.90940 0.93513 0.87375 0.88179 0.75875 0.79483 0.88421 0.92070 0.88937 0.93035 0.91996 0.89667 0.91376 0.89907 0.93402 0.90119 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.80 11.46 21.66 0.25 -50.55 16 2 C 0.02 1.13 4.49 84.93 0.38 1.51 16 3 Si 0.95 45.03 29.58 68.60 2.03 47.06 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.33 -17.23 7.25 84.04 0.61 -16.62 16 8 H 0.07 3.77 7.48 -2.91 -0.02 3.75 16 9 N -0.46 -21.11 2.44 -609.38 -1.49 -22.60 16 10 C 0.47 22.45 6.16 87.66 0.54 22.99 16 11 O -0.59 -33.84 13.60 -3.06 -0.04 -33.89 16 12 C -0.09 -3.27 1.67 -11.49 -0.02 -3.29 16 13 H 0.10 3.05 7.43 -2.39 -0.02 3.04 16 14 C -0.09 -2.89 4.66 30.63 0.14 -2.74 16 15 C -0.06 -1.57 5.96 29.70 0.18 -1.40 16 16 C 0.17 4.71 6.62 42.21 0.28 4.98 16 17 N -0.53 -13.90 10.32 -188.72 -1.95 -15.85 16 18 C 0.28 6.37 12.29 180.93 2.22 8.59 16 19 N -0.53 -13.20 10.44 -199.93 -2.09 -15.28 16 20 C 0.15 3.69 10.94 84.83 0.93 4.62 16 21 C -0.18 -4.86 5.73 -19.90 -0.11 -4.97 16 22 C -0.05 -1.62 4.62 29.68 0.14 -1.49 16 23 C 0.12 4.05 2.42 45.72 0.11 4.16 16 24 C -0.13 -4.16 6.31 31.67 0.20 -3.96 16 25 C -0.11 -2.78 6.91 31.89 0.22 -2.56 16 26 C -0.11 -3.00 6.83 31.67 0.22 -2.79 16 27 C -0.13 -3.99 6.25 31.32 0.20 -3.80 16 28 H 0.25 14.66 8.32 -92.71 -0.77 13.89 16 29 H 0.07 2.53 7.90 -2.39 -0.02 2.51 16 30 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.11 2.34 8.14 -2.39 -0.02 2.33 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.23 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.10 2.84 5.15 -2.39 -0.01 2.83 16 36 H 0.06 2.34 8.11 -2.39 -0.02 2.33 16 37 H 0.09 2.81 4.17 -2.39 -0.01 2.80 16 38 H 0.05 2.15 6.84 -2.39 -0.02 2.14 16 39 H 0.06 1.88 7.75 -2.39 -0.02 1.86 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.04 1.64 7.30 -2.39 -0.02 1.63 16 Total: -1.00 -70.48 349.91 3.94 -66.55 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 1.00 Total: 21.32 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 6.23 Total: 3.25 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -5.27 Total: -104.28 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.04 Total: -33.89 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.48 3.94 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592599438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.721 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds