Wall clock time and date at job start Tue Mar 31 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00545 * 2 1 4 4 H 1.48497 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46880 * 300.00343 * 3 2 1 6 6 H 1.48501 * 109.46738 * 60.00018 * 3 2 1 7 7 C 1.37885 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99960 * 180.27890 * 7 2 1 9 9 C 1.50707 * 119.99849 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46896 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99646 * 264.96570 * 10 9 7 12 12 C 1.52993 * 109.47113 * 90.65192 * 11 10 9 13 13 C 1.53001 * 117.49795 * 243.74244 * 12 11 10 14 14 C 1.53000 * 117.49772 * 175.08477 * 12 11 10 15 15 C 1.34769 * 120.00089 * 84.96914 * 10 9 7 16 16 O 1.21283 * 120.00201 * 184.19035 * 15 10 9 17 17 C 1.50703 * 120.00353 * 4.18792 * 15 10 9 18 18 H 1.09000 * 109.63035 * 24.56880 * 17 15 10 19 19 C 1.53296 * 109.63819 * 145.17755 * 17 15 10 20 20 C 1.52805 * 108.52468 * 189.46993 * 19 17 15 21 21 C 1.50443 * 110.45033 * 308.96006 * 20 19 17 22 22 N 1.32889 * 118.52899 * 197.41218 * 21 20 19 23 23 C 1.31603 * 121.05808 * 180.54641 * 22 21 20 24 24 N 1.31815 * 121.67581 * 359.97438 * 23 22 21 25 25 C 1.32194 * 120.63445 * 359.87880 * 24 23 22 26 26 C 1.37768 * 122.57780 * 17.75151 * 21 20 19 27 27 C 1.50340 * 122.80112 * 359.31448 * 26 21 20 28 28 H 0.96998 * 119.99455 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46714 * 300.00562 * 9 7 2 30 30 H 1.08994 * 109.46946 * 60.00304 * 9 7 2 31 31 H 1.09000 * 109.46468 * 210.65334 * 11 10 9 32 32 H 1.08998 * 109.47345 * 330.64757 * 11 10 9 33 33 H 1.09002 * 115.55402 * 29.41557 * 12 11 10 34 34 H 1.09001 * 117.49902 * 0.02562 * 13 12 11 35 35 H 1.09001 * 117.49920 * 145.02331 * 13 12 11 36 36 H 1.09004 * 117.49939 * 214.97724 * 14 12 11 37 37 H 1.09000 * 117.49910 * 359.97438 * 14 12 11 38 38 H 1.08998 * 109.63242 * 309.18839 * 19 17 15 39 39 H 1.09005 * 109.62978 * 69.76868 * 19 17 15 40 40 H 1.09005 * 109.30828 * 188.65371 * 20 19 17 41 41 H 1.09004 * 109.14020 * 69.15828 * 20 19 17 42 42 H 1.08009 * 119.16216 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.35872 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.30345 * 257.29447 * 27 26 21 45 45 H 1.09001 * 109.30824 * 137.89799 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 0.0040 9 6 1.2509 -2.4993 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.5941 -4.2419 -1.2644 12 6 3.8322 -3.5376 -1.8228 13 6 3.6872 -2.8081 -3.1599 14 6 4.4684 -4.1224 -3.0854 15 6 2.7185 -4.0585 1.1621 16 8 3.5632 -4.9288 1.1568 17 6 2.2456 -3.4755 2.4689 18 1 1.2431 -3.0657 2.3456 19 6 2.2317 -4.5672 3.5450 20 6 1.5307 -4.0166 4.7861 21 6 2.1229 -2.6907 5.1795 22 7 1.8956 -2.2330 6.4062 23 6 2.3806 -1.0744 6.7992 24 7 3.1090 -0.3216 5.9991 25 6 3.3786 -0.7138 4.7658 26 6 2.8837 -1.9328 4.3165 27 6 3.2016 -2.3690 2.9134 28 1 -0.4849 0.8401 0.0004 29 1 0.6245 -2.5570 0.8897 30 1 0.6240 -2.5567 -0.8903 31 1 2.8214 -5.2938 -1.0915 32 1 1.7758 -4.1599 -1.9798 33 1 4.4989 -3.0993 -1.0801 34 1 2.7096 -2.8296 -3.6415 35 1 4.2587 -1.8901 -3.2969 36 1 5.5535 -4.0685 -3.1735 37 1 4.0051 -5.0091 -3.5180 38 1 1.6912 -5.4387 3.1756 39 1 3.2548 -4.8468 3.7963 40 1 1.6477 -4.7220 5.6089 41 1 0.4701 -3.8877 4.5700 42 1 2.1765 -0.7317 7.8030 43 1 3.9762 -0.0936 4.1141 44 1 4.2256 -2.7404 2.8747 45 1 3.1047 -1.5171 2.2404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592761667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:45 Heat of formation + Delta-G solvation = 22.801928 kcal Electronic energy + Delta-G solvation = -27128.430487 eV Core-core repulsion = 23532.103763 eV Total energy + Delta-G solvation = -3596.326725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16929 -39.49490 -37.18429 -36.12592 -34.73290 -33.81962 -32.54368 -31.25757 -30.16715 -27.90392 -26.44910 -24.83398 -23.87852 -22.98056 -22.74830 -21.97920 -20.82504 -19.96879 -18.30247 -17.32672 -16.85847 -16.59430 -16.42504 -15.84743 -15.06676 -14.76863 -14.59749 -14.39695 -14.00240 -13.80046 -13.59711 -13.47192 -13.28724 -12.89331 -12.65457 -12.23376 -12.14459 -11.93448 -11.72599 -11.58858 -11.28903 -11.15723 -11.02005 -10.99537 -10.67733 -10.62663 -10.52115 -10.30220 -10.12735 -9.96069 -9.73670 -9.43755 -9.07051 -8.97241 -8.93854 -8.58481 -7.80510 -6.24635 -4.30199 1.11265 1.21197 3.15821 3.23553 3.26543 3.30596 3.78226 3.91901 4.14323 4.25106 4.30422 4.36999 4.62553 4.90651 4.93202 5.06788 5.10381 5.19005 5.22804 5.33124 5.42922 5.46943 5.55866 5.67325 5.72894 5.77236 5.82861 5.92186 5.92615 5.97447 6.11584 6.13470 6.20679 6.28267 6.29059 6.46007 6.46523 6.48695 6.64032 6.68545 6.78098 7.12710 7.15237 7.47592 7.70749 7.99985 8.23846 8.25446 8.73689 8.94647 9.36583 10.82310 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.005574 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.121862 B = 5021.714936 C = 6608.146354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.236 3.764 10 N -0.592 5.592 11 C 0.153 3.847 12 C -0.143 4.143 13 C -0.169 4.169 14 C -0.189 4.189 15 C 0.524 3.476 16 O -0.571 6.571 17 C -0.101 4.101 18 H 0.105 0.895 19 C -0.101 4.101 20 C -0.070 4.070 21 C 0.176 3.824 22 N -0.524 5.524 23 C 0.278 3.722 24 N -0.524 5.524 25 C 0.149 3.851 26 C -0.157 4.157 27 C -0.066 4.066 28 H 0.264 0.736 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.191 0.809 43 H 0.167 0.833 44 H 0.080 0.920 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -5.638 3.960 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.713 3.287 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.117 3.883 10 N -0.321 5.321 11 C 0.029 3.971 12 C -0.162 4.162 13 C -0.206 4.206 14 C -0.227 4.227 15 C 0.312 3.688 16 O -0.452 6.452 17 C -0.123 4.123 18 H 0.123 0.877 19 C -0.139 4.139 20 C -0.107 4.107 21 C 0.032 3.968 22 N -0.238 5.238 23 C -0.011 4.011 24 N -0.238 5.238 25 C -0.018 4.018 26 C -0.161 4.161 27 C -0.104 4.104 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.208 0.792 43 H 0.185 0.815 44 H 0.098 0.902 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.463 -5.638 4.878 8.220 hybrid contribution 0.499 1.163 -0.921 1.565 sum 3.962 -4.476 3.957 7.168 Atomic orbital electron populations 1.69914 1.05960 1.27142 1.49716 1.24900 0.94755 0.99044 0.94896 0.86622 0.80303 0.83812 0.77944 1.19503 1.20836 1.20801 1.21441 0.93488 0.90111 1.51556 0.91874 1.19504 0.87547 0.82821 0.98475 1.48238 1.44655 1.34611 1.04588 1.20844 0.94587 0.96018 0.85613 1.22595 0.99949 1.02793 0.90866 1.22917 1.01443 0.95132 1.01101 1.22938 0.99105 0.97533 1.03127 1.20262 0.81195 0.81789 0.85520 1.90600 1.33048 1.33545 1.87962 1.21254 1.02271 0.96188 0.92538 0.87689 1.21453 1.01783 0.97494 0.93176 1.20427 1.00356 0.91389 0.98574 1.21316 0.91345 0.95796 0.88321 1.68330 1.22585 1.15830 1.17052 1.24755 0.90154 0.86597 0.99554 1.68374 1.15246 1.35076 1.05098 1.23289 0.93963 0.92726 0.91799 1.21220 0.99660 0.96567 0.98652 1.20355 0.98884 1.00035 0.91173 0.92602 0.94438 0.94617 0.90907 0.91016 0.88021 0.88955 0.89350 0.89495 0.89296 0.90559 0.90730 0.89215 0.89059 0.79241 0.81536 0.90158 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.28 13.29 55.43 0.74 -22.54 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 19.59 29.54 -169.99 -5.02 14.56 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -12.36 7.79 -34.43 -0.27 -12.62 16 8 H 0.06 1.51 7.64 -52.49 -0.40 1.11 16 9 C 0.24 5.11 5.01 -5.19 -0.03 5.09 16 10 N -0.59 -11.37 2.47 -175.06 -0.43 -11.81 16 11 C 0.15 2.65 5.69 -4.04 -0.02 2.62 16 12 C -0.14 -2.40 6.01 -90.62 -0.54 -2.95 16 13 C -0.17 -2.59 10.18 -26.69 -0.27 -2.86 16 14 C -0.19 -2.62 10.25 -26.69 -0.27 -2.89 16 15 C 0.52 9.93 6.60 -10.99 -0.07 9.86 16 16 O -0.57 -11.84 16.09 5.56 0.09 -11.75 16 17 C -0.10 -1.70 2.03 -91.70 -0.19 -1.88 16 18 H 0.11 1.88 5.75 -51.93 -0.30 1.58 16 19 C -0.10 -1.42 4.80 -26.68 -0.13 -1.55 16 20 C -0.07 -0.92 5.96 -28.11 -0.17 -1.08 16 21 C 0.18 2.70 6.62 -82.43 -0.55 2.16 16 22 N -0.52 -8.00 10.32 -11.00 -0.11 -8.12 16 23 C 0.28 3.96 12.29 -92.30 -1.13 2.83 16 24 N -0.52 -8.16 10.44 -14.54 -0.15 -8.31 16 25 C 0.15 2.31 10.94 -17.11 -0.19 2.12 16 26 C -0.16 -2.48 5.73 -104.68 -0.60 -3.08 16 27 C -0.07 -1.09 5.02 -28.14 -0.14 -1.23 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.04 0.85 5.87 -51.93 -0.31 0.54 16 30 H 0.04 0.83 7.83 -51.93 -0.41 0.42 16 31 H 0.07 1.24 7.50 -51.93 -0.39 0.85 16 32 H 0.07 1.17 7.58 -51.93 -0.39 0.78 16 33 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 34 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 39 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.19 2.00 8.06 -52.48 -0.42 1.58 16 43 H 0.17 2.26 8.06 -52.48 -0.42 1.84 16 44 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 45 H 0.11 2.07 6.29 -51.93 -0.33 1.74 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -27.89 367.96 -10.73 -38.62 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.72 Total: 7.72 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.67 Total: -3.91 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.04 Total: -50.78 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.89 -10.73 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592761667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.422 kcal (2) G-P(sol) polarization free energy of solvation -27.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds