Wall clock time and date at job start Tue Mar 31 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00545 * 2 1 4 4 H 1.48497 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46880 * 300.00343 * 3 2 1 6 6 H 1.48501 * 109.46738 * 60.00018 * 3 2 1 7 7 C 1.37885 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99960 * 180.27890 * 7 2 1 9 9 C 1.50707 * 119.99849 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46896 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99646 * 264.96570 * 10 9 7 12 12 C 1.52993 * 109.47113 * 90.65192 * 11 10 9 13 13 C 1.53001 * 117.49795 * 243.74244 * 12 11 10 14 14 C 1.53000 * 117.49772 * 175.08477 * 12 11 10 15 15 C 1.34769 * 120.00089 * 84.96914 * 10 9 7 16 16 O 1.21283 * 120.00201 * 184.19035 * 15 10 9 17 17 C 1.50703 * 120.00353 * 4.18792 * 15 10 9 18 18 H 1.09000 * 109.63035 * 24.56880 * 17 15 10 19 19 C 1.53296 * 109.63819 * 145.17755 * 17 15 10 20 20 C 1.52805 * 108.52468 * 189.46993 * 19 17 15 21 21 C 1.50443 * 110.45033 * 308.96006 * 20 19 17 22 22 N 1.32889 * 118.52899 * 197.41218 * 21 20 19 23 23 C 1.31603 * 121.05808 * 180.54641 * 22 21 20 24 24 N 1.31815 * 121.67581 * 359.97438 * 23 22 21 25 25 C 1.32194 * 120.63445 * 359.87880 * 24 23 22 26 26 C 1.37768 * 122.57780 * 17.75151 * 21 20 19 27 27 C 1.50340 * 122.80112 * 359.31448 * 26 21 20 28 28 H 0.96998 * 119.99455 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46714 * 300.00562 * 9 7 2 30 30 H 1.08994 * 109.46946 * 60.00304 * 9 7 2 31 31 H 1.09000 * 109.46468 * 210.65334 * 11 10 9 32 32 H 1.08998 * 109.47345 * 330.64757 * 11 10 9 33 33 H 1.09002 * 115.55402 * 29.41557 * 12 11 10 34 34 H 1.09001 * 117.49902 * 0.02562 * 13 12 11 35 35 H 1.09001 * 117.49920 * 145.02331 * 13 12 11 36 36 H 1.09004 * 117.49939 * 214.97724 * 14 12 11 37 37 H 1.09000 * 117.49910 * 359.97438 * 14 12 11 38 38 H 1.08998 * 109.63242 * 309.18839 * 19 17 15 39 39 H 1.09005 * 109.62978 * 69.76868 * 19 17 15 40 40 H 1.09005 * 109.30828 * 188.65371 * 20 19 17 41 41 H 1.09004 * 109.14020 * 69.15828 * 20 19 17 42 42 H 1.08009 * 119.16216 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.35872 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.30345 * 257.29447 * 27 26 21 45 45 H 1.09001 * 109.30824 * 137.89799 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 0.0040 9 6 1.2509 -2.4993 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.5941 -4.2419 -1.2644 12 6 3.8322 -3.5376 -1.8228 13 6 3.6872 -2.8081 -3.1599 14 6 4.4684 -4.1224 -3.0854 15 6 2.7185 -4.0585 1.1621 16 8 3.5632 -4.9288 1.1568 17 6 2.2456 -3.4755 2.4689 18 1 1.2431 -3.0657 2.3456 19 6 2.2317 -4.5672 3.5450 20 6 1.5307 -4.0166 4.7861 21 6 2.1229 -2.6907 5.1795 22 7 1.8956 -2.2330 6.4062 23 6 2.3806 -1.0744 6.7992 24 7 3.1090 -0.3216 5.9991 25 6 3.3786 -0.7138 4.7658 26 6 2.8837 -1.9328 4.3165 27 6 3.2016 -2.3690 2.9134 28 1 -0.4849 0.8401 0.0004 29 1 0.6245 -2.5570 0.8897 30 1 0.6240 -2.5567 -0.8903 31 1 2.8214 -5.2938 -1.0915 32 1 1.7758 -4.1599 -1.9798 33 1 4.4989 -3.0993 -1.0801 34 1 2.7096 -2.8296 -3.6415 35 1 4.2587 -1.8901 -3.2969 36 1 5.5535 -4.0685 -3.1735 37 1 4.0051 -5.0091 -3.5180 38 1 1.6912 -5.4387 3.1756 39 1 3.2548 -4.8468 3.7963 40 1 1.6477 -4.7220 5.6089 41 1 0.4701 -3.8877 4.5700 42 1 2.1765 -0.7317 7.8030 43 1 3.9762 -0.0936 4.1141 44 1 4.2256 -2.7404 2.8747 45 1 3.1047 -1.5171 2.2404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592761667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:44 Heat of formation + Delta-G solvation = 10.481707 kcal Electronic energy + Delta-G solvation = -27128.964732 eV Core-core repulsion = 23532.103763 eV Total energy + Delta-G solvation = -3596.860970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.36482 -40.97061 -38.46409 -37.42672 -36.35670 -35.01050 -34.38140 -32.46325 -31.40353 -29.58278 -27.96144 -26.07169 -25.23572 -24.63908 -23.96398 -23.15466 -22.12872 -21.26430 -19.74122 -18.67364 -18.38225 -18.15724 -17.74808 -17.29408 -16.50680 -16.23936 -15.99620 -15.84256 -15.25678 -15.03893 -14.82377 -14.69840 -14.62098 -14.36463 -14.15859 -13.75269 -13.58401 -13.38572 -13.13293 -13.01322 -12.78839 -12.70125 -12.55041 -12.30098 -12.20790 -11.92462 -11.82995 -11.80188 -11.55108 -11.32438 -11.26828 -10.73576 -10.65347 -10.39631 -10.20141 -10.15754 -9.43057 -8.16398 -6.25564 -0.06073 0.02214 1.37424 1.43797 1.50486 1.74523 2.29469 2.44154 2.75164 3.04165 3.04478 3.15998 3.26648 3.44660 3.61265 3.69415 3.82156 3.93169 4.00241 4.09610 4.18752 4.27102 4.32100 4.42713 4.46862 4.48513 4.60304 4.75968 4.78309 4.79191 4.83365 4.85016 4.90607 4.99475 5.08355 5.11183 5.17106 5.23821 5.31079 5.32427 5.37617 5.48467 5.72063 5.90660 5.97524 6.12691 6.60530 6.88398 7.07845 7.34885 7.46961 8.89638 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.005574 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.121862 B = 5021.714936 C = 6608.146354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.251 3.749 10 N -0.594 5.594 11 C 0.151 3.849 12 C -0.167 4.167 13 C -0.172 4.172 14 C -0.160 4.160 15 C 0.523 3.477 16 O -0.588 6.588 17 C -0.099 4.099 18 H 0.092 0.908 19 C -0.091 4.091 20 C -0.064 4.064 21 C 0.171 3.829 22 N -0.532 5.532 23 C 0.277 3.723 24 N -0.538 5.538 25 C 0.142 3.858 26 C -0.173 4.173 27 C -0.054 4.054 28 H 0.263 0.737 29 H 0.030 0.970 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.226 0.774 43 H 0.178 0.822 44 H 0.080 0.920 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -6.180 4.405 8.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.131 3.869 10 N -0.323 5.323 11 C 0.028 3.972 12 C -0.187 4.187 13 C -0.209 4.209 14 C -0.197 4.197 15 C 0.312 3.688 16 O -0.470 6.470 17 C -0.120 4.120 18 H 0.110 0.890 19 C -0.130 4.130 20 C -0.101 4.101 21 C 0.027 3.973 22 N -0.246 5.246 23 C -0.010 4.010 24 N -0.252 5.252 25 C -0.025 4.025 26 C -0.177 4.177 27 C -0.093 4.093 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.242 0.758 43 H 0.195 0.805 44 H 0.098 0.902 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.956 -6.188 5.315 9.065 hybrid contribution 0.375 1.307 -1.049 1.717 sum 4.331 -4.881 4.266 7.796 Atomic orbital electron populations 1.69998 1.07029 1.27565 1.51361 1.25442 0.95242 1.01465 0.95075 0.85848 0.79613 0.80914 0.77490 1.18907 1.21060 1.21014 1.21531 0.93087 0.90805 1.49976 0.92578 1.19162 0.87477 0.83035 0.97264 1.48223 1.44305 1.34083 1.05700 1.20964 0.95171 0.96046 0.84991 1.22456 1.00025 1.04823 0.91369 1.22956 1.02049 0.96081 0.99857 1.23032 0.99829 0.97243 0.99629 1.20610 0.80729 0.81401 0.86041 1.90583 1.33801 1.34359 1.88243 1.21237 1.01305 0.97098 0.92322 0.88995 1.21395 1.02012 0.96838 0.92711 1.20453 1.00301 0.90800 0.98577 1.21662 0.90831 0.96445 0.88375 1.68426 1.23013 1.16344 1.16843 1.25502 0.88852 0.86031 1.00634 1.68451 1.16000 1.35532 1.05192 1.23542 0.93906 0.92809 0.92201 1.21170 1.00938 0.97240 0.98329 1.20146 0.98845 0.98936 0.91376 0.92768 0.95202 0.96125 0.90575 0.90201 0.90633 0.88690 0.89523 0.88176 0.87328 0.89567 0.90978 0.87044 0.88321 0.75833 0.80476 0.90169 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.64 13.29 21.45 0.28 -48.36 16 2 C 0.03 1.38 5.46 84.66 0.46 1.84 16 3 Si 0.93 40.33 29.54 68.60 2.03 42.36 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.52 -24.44 7.79 25.60 0.20 -24.24 16 8 H 0.06 2.72 7.64 -2.92 -0.02 2.70 16 9 C 0.25 11.06 5.01 85.64 0.43 11.49 16 10 N -0.59 -23.05 2.47 -826.17 -2.04 -25.09 16 11 C 0.15 5.18 5.69 86.38 0.49 5.68 16 12 C -0.17 -5.56 6.01 -10.80 -0.06 -5.63 16 13 C -0.17 -5.11 10.18 30.62 0.31 -4.80 16 14 C -0.16 -4.09 10.25 30.62 0.31 -3.78 16 15 C 0.52 19.89 6.60 87.66 0.58 20.47 16 16 O -0.59 -24.26 16.09 -3.04 -0.05 -24.31 16 17 C -0.10 -3.29 2.03 -11.50 -0.02 -3.32 16 18 H 0.09 3.33 5.75 -2.39 -0.01 3.32 16 19 C -0.09 -2.48 4.80 30.63 0.15 -2.33 16 20 C -0.06 -1.57 5.96 29.70 0.18 -1.39 16 21 C 0.17 5.03 6.62 42.21 0.28 5.31 16 22 N -0.53 -15.29 10.32 -188.71 -1.95 -17.23 16 23 C 0.28 7.38 12.29 180.94 2.22 9.61 16 24 N -0.54 -16.07 10.44 -199.92 -2.09 -18.16 16 25 C 0.14 4.32 10.94 84.83 0.93 5.25 16 26 C -0.17 -5.39 5.73 -19.90 -0.11 -5.50 16 27 C -0.05 -1.81 5.02 29.68 0.15 -1.66 16 28 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 29 H 0.03 1.38 5.87 -2.39 -0.01 1.37 16 30 H 0.02 0.98 7.83 -2.39 -0.02 0.96 16 31 H 0.08 2.54 7.50 -2.39 -0.02 2.52 16 32 H 0.08 2.56 7.58 -2.39 -0.02 2.55 16 33 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.09 2.75 8.03 -2.39 -0.02 2.73 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.18 8.12 -2.39 -0.02 2.16 16 39 H 0.07 2.01 8.09 -2.38 -0.02 1.99 16 40 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.23 4.10 8.06 -2.91 -0.02 4.08 16 43 H 0.18 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 45 H 0.09 3.37 6.29 -2.39 -0.02 3.35 16 Total: -1.00 -58.64 367.96 3.66 -54.98 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.99 Total: 28.83 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.49 Total: 6.99 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -5.79 Total: -108.84 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.31 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -58.64 3.66 -54.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592761667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.459 kcal (2) G-P(sol) polarization free energy of solvation -58.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds