Wall clock time and date at job start Tue Mar 31 2020 12:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00506 * 2 1 4 4 H 1.48498 * 109.47097 * 269.99986 * 3 2 1 5 5 H 1.48501 * 109.47029 * 30.00022 * 3 2 1 6 6 H 1.48498 * 109.47450 * 149.99708 * 3 2 1 7 7 C 1.37881 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00011 * 161.83184 * 7 2 1 9 9 C 1.50701 * 120.00254 * 341.83472 * 7 2 1 10 10 C 1.52996 * 115.54793 * 323.94655 * 9 7 2 11 11 N 1.46510 * 109.46991 * 282.00689 * 10 9 7 12 12 C 1.39675 * 119.99705 * 175.55466 * 11 10 9 13 13 C 1.38928 * 120.07634 * 7.81724 * 12 11 10 14 14 C 1.38085 * 119.92064 * 180.28032 * 13 12 11 15 15 C 1.38304 * 120.07581 * 359.72077 * 14 13 12 16 16 C 1.38269 * 120.15073 * 359.97438 * 15 14 13 17 17 C 1.38120 * 120.07174 * 0.04352 * 16 15 14 18 18 C 1.50702 * 120.03457 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47164 * 263.43109 * 18 17 16 20 20 C 1.47051 * 125.40738 * 80.55811 * 19 18 17 21 21 C 1.54104 * 103.98854 * 179.97438 * 20 19 18 22 22 N 1.47389 * 103.70492 * 0.10891 * 21 20 19 23 23 C 1.33944 * 125.41096 * 260.55644 * 19 18 17 24 24 O 1.21587 * 123.04341 * 359.97438 * 23 19 18 25 25 C 1.52994 * 117.51805 * 109.64314 * 9 7 2 26 26 C 1.52991 * 60.00059 * 107.48179 * 25 9 7 27 27 H 0.97002 * 119.99519 * 5.01715 * 1 2 3 28 28 H 1.08997 * 109.47478 * 162.00929 * 10 9 7 29 29 H 1.08999 * 109.47424 * 42.00688 * 10 9 7 30 30 H 0.96996 * 119.99716 * 355.55177 * 11 10 9 31 31 H 1.07999 * 120.04270 * 0.02562 * 13 12 11 32 32 H 1.08002 * 119.96154 * 179.70644 * 14 13 12 33 33 H 1.07999 * 119.92461 * 180.02562 * 15 14 13 34 34 H 1.08001 * 119.95975 * 180.02562 * 16 15 14 35 35 H 1.09003 * 109.47199 * 143.43062 * 18 17 16 36 36 H 1.09001 * 109.47086 * 23.43483 * 18 17 16 37 37 H 1.09001 * 110.55114 * 298.59088 * 20 19 18 38 38 H 1.08999 * 110.55269 * 61.26233 * 20 19 18 39 39 H 1.09001 * 110.54852 * 118.66754 * 21 20 19 40 40 H 1.08999 * 110.54973 * 241.47759 * 21 20 19 41 41 H 0.96998 * 125.37952 * 179.97438 * 22 21 20 42 42 H 1.08998 * 117.50386 * 214.97143 * 25 9 7 43 43 H 1.09001 * 117.50284 * 359.97438 * 25 9 7 44 44 H 1.09004 * 117.50497 * 252.50664 * 26 25 9 45 45 H 1.09008 * 117.52091 * 107.48036 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0441 -1.2177 -0.2911 9 6 1.3073 -2.4665 0.4080 10 6 0.2790 -2.3247 1.5319 11 7 0.9722 -2.2346 2.8195 12 6 0.2448 -2.0059 3.9898 13 6 -1.1441 -2.0252 3.9612 14 6 -1.8601 -1.7930 5.1189 15 6 -1.1961 -1.5472 6.3069 16 6 0.1861 -1.5335 6.3401 17 6 0.9084 -1.7646 5.1857 18 6 2.4149 -1.7490 5.2227 19 7 2.8999 -0.4308 4.8062 20 6 2.9652 0.7628 5.6627 21 6 3.5426 1.8529 4.7391 22 7 3.7391 1.1552 3.4558 23 6 3.3545 -0.1214 3.5848 24 8 3.4117 -0.9262 2.6752 25 6 1.0204 -3.4968 -0.6860 26 6 2.1148 -3.7646 0.3489 27 1 -0.4849 0.8369 -0.0735 28 1 -0.3795 -3.1933 1.5338 29 1 -0.3109 -1.4220 1.3730 30 1 1.9363 -2.3338 2.8592 31 1 -1.6632 -2.2175 3.0339 32 1 -2.9398 -1.8032 5.0965 33 1 -1.7586 -1.3663 7.2110 34 1 0.7014 -1.3417 7.2697 35 1 2.8029 -2.5097 4.5453 36 1 2.7556 -1.9578 6.2369 37 1 1.9692 1.0418 6.0066 38 1 3.6270 0.5892 6.5112 39 1 2.8334 2.6728 4.6251 40 1 4.4931 2.2191 5.1272 41 1 4.0930 1.5566 2.6468 42 1 0.0991 -4.0737 -0.6051 43 1 1.3355 -3.2544 -1.7009 44 1 3.1504 -3.6985 0.0151 45 1 1.9139 -4.5175 1.1112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594702677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:17 Heat of formation + Delta-G solvation = 54.693772 kcal Electronic energy + Delta-G solvation = -28133.749074 eV Core-core repulsion = 24538.805283 eV Total energy + Delta-G solvation = -3594.943791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.57529 -38.88344 -36.80879 -35.71165 -34.25530 -33.67459 -32.04596 -30.80496 -28.86306 -28.39975 -26.05143 -25.51394 -24.74597 -22.68319 -21.52722 -21.20185 -20.62870 -19.69826 -18.88868 -17.24990 -16.79886 -16.35989 -16.03460 -15.78580 -15.00577 -14.75107 -14.53852 -14.10833 -13.83884 -13.59152 -13.47653 -13.33994 -13.07176 -12.99386 -12.67561 -12.31582 -12.20888 -12.05618 -11.70190 -11.52630 -11.46419 -10.90625 -10.80690 -10.70716 -10.47647 -10.39572 -10.14044 -9.45962 -9.37117 -9.23857 -8.89580 -8.75673 -8.62715 -8.37728 -8.20484 -7.93438 -6.48447 -5.92031 -3.86726 1.83320 2.26160 3.04133 3.29046 3.35678 3.40659 3.77284 4.23386 4.42482 4.48048 4.57747 4.59397 4.97081 5.04773 5.14154 5.32358 5.37630 5.46732 5.51855 5.59123 5.68071 5.77795 5.85946 5.94194 6.06440 6.15436 6.30665 6.36346 6.46991 6.54778 6.66332 6.77424 6.78342 6.95677 7.00379 7.05768 7.11146 7.14539 7.16970 7.40431 7.52953 7.55569 7.71905 7.97158 8.11915 8.37837 8.55897 8.85336 9.03790 9.25175 9.66887 11.08144 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.007724 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.897910 B = 3624.412730 C = 4954.731889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.891 3.109 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.448 4.448 8 H 0.057 0.943 9 C 0.053 3.947 10 C 0.142 3.858 11 N -0.705 5.705 12 C 0.257 3.743 13 C -0.208 4.208 14 C -0.064 4.064 15 C -0.214 4.214 16 C -0.055 4.055 17 C -0.217 4.217 18 C 0.205 3.795 19 N -0.631 5.631 20 C 0.097 3.903 21 C 0.093 3.907 22 N -0.749 5.749 23 C 0.689 3.311 24 O -0.534 6.534 25 C -0.200 4.200 26 C -0.206 4.206 27 H 0.258 0.742 28 H 0.016 0.984 29 H 0.118 0.882 30 H 0.408 0.592 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.426 0.574 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 1.752 14.439 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.721 3.279 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.485 4.485 8 H 0.075 0.925 9 C 0.052 3.948 10 C 0.019 3.981 11 N -0.331 5.331 12 C 0.144 3.856 13 C -0.232 4.232 14 C -0.083 4.083 15 C -0.234 4.234 16 C -0.074 4.074 17 C -0.224 4.224 18 C 0.083 3.917 19 N -0.372 5.372 20 C -0.027 4.027 21 C -0.033 4.033 22 N -0.414 5.414 23 C 0.389 3.611 24 O -0.407 6.407 25 C -0.239 4.239 26 C -0.244 4.244 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.135 0.865 30 H 0.250 0.750 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.269 0.731 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.642 1.279 13.801 14.110 hybrid contribution 0.730 1.256 -0.298 1.483 sum 3.372 2.535 13.503 14.147 Atomic orbital electron populations 1.69762 1.06037 1.26370 1.50055 1.24812 0.94477 0.98761 0.94801 0.86641 0.80257 0.83595 0.77413 1.21599 1.21713 1.19477 1.20285 0.96093 0.89484 1.42630 0.92483 1.19021 0.94609 0.88505 0.92698 1.21351 0.94577 1.01704 0.80456 1.45515 1.10459 1.73403 1.03717 1.17856 0.91248 0.89746 0.86745 1.20687 0.92444 1.10988 0.99042 1.20797 0.98744 0.96314 0.92424 1.20577 0.94130 1.11117 0.97623 1.20555 0.93828 0.96959 0.96103 1.19550 0.95174 1.14307 0.93398 1.19728 0.89892 0.82061 0.99973 1.47270 1.67992 1.10488 1.11413 1.22199 1.01454 0.84998 0.94082 1.22297 1.00780 0.95694 0.84486 1.45379 1.71254 1.10822 1.13906 1.16041 0.78661 0.83258 0.83169 1.91054 1.59405 1.50323 1.39957 1.22970 0.97751 1.07269 0.95909 1.22791 0.96043 1.02987 1.02570 0.93186 0.96604 0.86452 0.75024 0.86266 0.87195 0.87534 0.87335 0.89747 0.90511 0.90619 0.90786 0.90756 0.90667 0.73145 0.91871 0.90360 0.90725 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 10.92 55.43 0.61 -24.40 16 2 C 0.07 2.00 5.13 -17.82 -0.09 1.91 16 3 Si 0.89 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.18 5.71 56.52 0.32 -5.86 16 7 C -0.45 -12.45 8.07 -34.44 -0.28 -12.72 16 8 H 0.06 1.65 7.88 -52.48 -0.41 1.24 16 9 C 0.05 1.34 1.73 -155.67 -0.27 1.07 16 10 C 0.14 3.47 4.55 -4.04 -0.02 3.45 16 11 N -0.71 -15.61 5.41 -58.63 -0.32 -15.92 16 12 C 0.26 5.10 6.62 -83.79 -0.55 4.55 16 13 C -0.21 -3.98 9.31 -39.38 -0.37 -4.34 16 14 C -0.06 -1.03 10.04 -39.61 -0.40 -1.42 16 15 C -0.21 -3.12 10.04 -39.55 -0.40 -3.52 16 16 C -0.06 -0.79 9.67 -39.61 -0.38 -1.18 16 17 C -0.22 -3.63 5.48 -104.42 -0.57 -4.21 16 18 C 0.21 3.10 5.76 -5.19 -0.03 3.07 16 19 N -0.63 -9.91 2.94 -180.19 -0.53 -10.44 16 20 C 0.10 1.11 7.67 -3.16 -0.02 1.08 16 21 C 0.09 1.06 8.08 -2.98 -0.02 1.04 16 22 N -0.75 -12.33 6.39 -64.47 -0.41 -12.74 16 23 C 0.69 13.22 8.60 -88.40 -0.76 12.46 16 24 O -0.53 -12.44 13.78 5.29 0.07 -12.36 16 25 C -0.20 -4.74 9.88 -26.74 -0.26 -5.01 16 26 C -0.21 -4.76 9.94 -26.74 -0.27 -5.02 16 27 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 28 H 0.02 0.37 7.71 -51.93 -0.40 -0.03 16 29 H 0.12 3.20 5.21 -51.93 -0.27 2.93 16 30 H 0.41 9.30 3.91 -40.82 -0.16 9.14 16 31 H 0.12 2.37 6.78 -52.49 -0.36 2.02 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.08 1.42 6.46 -51.93 -0.34 1.09 16 36 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.43 7.22 7.53 -40.82 -0.31 6.91 16 42 H 0.06 1.40 8.10 -51.93 -0.42 0.98 16 43 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 44 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 45 H 0.06 1.38 8.14 -51.92 -0.42 0.96 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -31.25 360.60 -11.39 -42.64 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -6.52 Total: 19.99 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -4.70 Total: -8.81 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.65 Total: -63.51 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.25 -11.39 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594702677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.333 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds