Wall clock time and date at job start Tue Mar 31 2020 12:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00506 * 2 1 4 4 H 1.48498 * 109.47097 * 269.99986 * 3 2 1 5 5 H 1.48501 * 109.47029 * 30.00022 * 3 2 1 6 6 H 1.48498 * 109.47450 * 149.99708 * 3 2 1 7 7 C 1.37881 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00011 * 161.83184 * 7 2 1 9 9 C 1.50701 * 120.00254 * 341.83472 * 7 2 1 10 10 C 1.52996 * 115.54793 * 323.94655 * 9 7 2 11 11 N 1.46510 * 109.46991 * 282.00689 * 10 9 7 12 12 C 1.39675 * 119.99705 * 175.55466 * 11 10 9 13 13 C 1.38928 * 120.07634 * 7.81724 * 12 11 10 14 14 C 1.38085 * 119.92064 * 180.28032 * 13 12 11 15 15 C 1.38304 * 120.07581 * 359.72077 * 14 13 12 16 16 C 1.38269 * 120.15073 * 359.97438 * 15 14 13 17 17 C 1.38120 * 120.07174 * 0.04352 * 16 15 14 18 18 C 1.50702 * 120.03457 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47164 * 263.43109 * 18 17 16 20 20 C 1.47051 * 125.40738 * 80.55811 * 19 18 17 21 21 C 1.54104 * 103.98854 * 179.97438 * 20 19 18 22 22 N 1.47389 * 103.70492 * 0.10891 * 21 20 19 23 23 C 1.33944 * 125.41096 * 260.55644 * 19 18 17 24 24 O 1.21587 * 123.04341 * 359.97438 * 23 19 18 25 25 C 1.52994 * 117.51805 * 109.64314 * 9 7 2 26 26 C 1.52991 * 60.00059 * 107.48179 * 25 9 7 27 27 H 0.97002 * 119.99519 * 5.01715 * 1 2 3 28 28 H 1.08997 * 109.47478 * 162.00929 * 10 9 7 29 29 H 1.08999 * 109.47424 * 42.00688 * 10 9 7 30 30 H 0.96996 * 119.99716 * 355.55177 * 11 10 9 31 31 H 1.07999 * 120.04270 * 0.02562 * 13 12 11 32 32 H 1.08002 * 119.96154 * 179.70644 * 14 13 12 33 33 H 1.07999 * 119.92461 * 180.02562 * 15 14 13 34 34 H 1.08001 * 119.95975 * 180.02562 * 16 15 14 35 35 H 1.09003 * 109.47199 * 143.43062 * 18 17 16 36 36 H 1.09001 * 109.47086 * 23.43483 * 18 17 16 37 37 H 1.09001 * 110.55114 * 298.59088 * 20 19 18 38 38 H 1.08999 * 110.55269 * 61.26233 * 20 19 18 39 39 H 1.09001 * 110.54852 * 118.66754 * 21 20 19 40 40 H 1.08999 * 110.54973 * 241.47759 * 21 20 19 41 41 H 0.96998 * 125.37952 * 179.97438 * 22 21 20 42 42 H 1.08998 * 117.50386 * 214.97143 * 25 9 7 43 43 H 1.09001 * 117.50284 * 359.97438 * 25 9 7 44 44 H 1.09004 * 117.50497 * 252.50664 * 26 25 9 45 45 H 1.09008 * 117.52091 * 107.48036 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0441 -1.2177 -0.2911 9 6 1.3073 -2.4665 0.4080 10 6 0.2790 -2.3247 1.5319 11 7 0.9722 -2.2346 2.8195 12 6 0.2448 -2.0059 3.9898 13 6 -1.1441 -2.0252 3.9612 14 6 -1.8601 -1.7930 5.1189 15 6 -1.1961 -1.5472 6.3069 16 6 0.1861 -1.5335 6.3401 17 6 0.9084 -1.7646 5.1857 18 6 2.4149 -1.7490 5.2227 19 7 2.8999 -0.4308 4.8062 20 6 2.9652 0.7628 5.6627 21 6 3.5426 1.8529 4.7391 22 7 3.7391 1.1552 3.4558 23 6 3.3545 -0.1214 3.5848 24 8 3.4117 -0.9262 2.6752 25 6 1.0204 -3.4968 -0.6860 26 6 2.1148 -3.7646 0.3489 27 1 -0.4849 0.8369 -0.0735 28 1 -0.3795 -3.1933 1.5338 29 1 -0.3109 -1.4220 1.3730 30 1 1.9363 -2.3338 2.8592 31 1 -1.6632 -2.2175 3.0339 32 1 -2.9398 -1.8032 5.0965 33 1 -1.7586 -1.3663 7.2110 34 1 0.7014 -1.3417 7.2697 35 1 2.8029 -2.5097 4.5453 36 1 2.7556 -1.9578 6.2369 37 1 1.9692 1.0418 6.0066 38 1 3.6270 0.5892 6.5112 39 1 2.8334 2.6728 4.6251 40 1 4.4931 2.2191 5.1272 41 1 4.0930 1.5566 2.6468 42 1 0.0991 -4.0737 -0.6051 43 1 1.3355 -3.2544 -1.7009 44 1 3.1504 -3.6985 0.0151 45 1 1.9139 -4.5175 1.1112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594702677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:16 Heat of formation + Delta-G solvation = 35.239422 kcal Electronic energy + Delta-G solvation = -28134.592678 eV Core-core repulsion = 24538.805283 eV Total energy + Delta-G solvation = -3595.787394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79517 -40.23645 -38.64268 -37.08634 -35.52971 -35.12662 -34.15703 -32.03885 -30.20710 -29.56237 -27.72404 -27.14359 -26.44884 -23.67816 -23.04430 -22.86221 -22.05645 -21.03784 -20.74591 -18.59356 -18.32182 -17.75746 -17.39460 -17.13905 -16.70672 -16.36042 -15.95462 -15.67488 -15.27771 -15.10312 -14.82821 -14.71283 -14.45057 -14.42051 -14.07611 -13.94918 -13.48157 -13.21798 -13.15893 -12.98521 -12.86980 -12.77459 -12.58115 -12.31760 -12.13995 -12.03848 -11.73616 -11.21849 -11.19351 -10.93559 -10.62923 -10.59419 -10.08144 -9.96031 -9.62467 -9.32582 -8.14876 -7.87123 -6.02430 0.56754 0.95619 1.31289 1.32104 1.45712 1.89291 2.42130 2.44271 2.84276 3.09845 3.13265 3.33989 3.68813 3.70474 3.92609 4.04828 4.23563 4.25143 4.30952 4.40115 4.51820 4.57833 4.65057 4.69887 4.70772 4.72597 4.84248 4.87471 4.90264 4.98971 5.03195 5.13149 5.17943 5.28333 5.32985 5.49654 5.62147 5.66749 5.76974 5.87405 5.93683 6.03365 6.26222 6.27307 6.46542 6.73529 6.80246 6.84994 7.31074 7.52393 7.87450 8.95754 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.007724 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.897910 B = 3624.412730 C = 4954.731889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.033 3.967 3 Si 0.940 3.060 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.455 4.455 8 H 0.035 0.965 9 C 0.026 3.974 10 C 0.163 3.837 11 N -0.717 5.717 12 C 0.221 3.779 13 C -0.237 4.237 14 C -0.069 4.069 15 C -0.201 4.201 16 C -0.045 4.045 17 C -0.216 4.216 18 C 0.205 3.795 19 N -0.631 5.631 20 C 0.094 3.906 21 C 0.089 3.911 22 N -0.758 5.758 23 C 0.673 3.327 24 O -0.589 6.589 25 C -0.198 4.198 26 C -0.187 4.187 27 H 0.255 0.745 28 H 0.010 0.990 29 H 0.086 0.914 30 H 0.404 0.596 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.419 0.581 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 2.855 18.545 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.038 3.962 11 N -0.345 5.345 12 C 0.111 3.889 13 C -0.260 4.260 14 C -0.088 4.088 15 C -0.221 4.221 16 C -0.064 4.064 17 C -0.222 4.222 18 C 0.083 3.917 19 N -0.370 5.370 20 C -0.028 4.028 21 C -0.035 4.035 22 N -0.420 5.420 23 C 0.372 3.628 24 O -0.466 6.466 25 C -0.237 4.237 26 C -0.224 4.224 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.103 0.897 30 H 0.244 0.756 31 H 0.111 0.889 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.260 0.740 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.083 2.413 17.996 18.417 hybrid contribution 0.541 0.924 -1.439 1.794 sum 3.624 3.338 16.557 17.274 Atomic orbital electron populations 1.69908 1.06996 1.26593 1.50877 1.25374 0.95145 1.01345 0.94683 0.85868 0.79900 0.80142 0.77325 1.21629 1.21573 1.17955 1.20267 0.95001 0.91048 1.42919 0.94715 1.19120 0.95880 0.88574 0.93864 1.20845 0.93915 0.99712 0.81729 1.45262 1.10023 1.75737 1.03522 1.18267 0.91651 0.91663 0.87289 1.20719 0.92689 1.13181 0.99454 1.21092 0.99898 0.95714 0.92079 1.21063 0.94663 1.08379 0.97989 1.21027 0.93882 0.94804 0.96718 1.19855 0.96235 1.13212 0.92919 1.19841 0.88822 0.81450 1.01571 1.47314 1.66916 1.11800 1.10935 1.22551 1.02914 0.82940 0.94396 1.22666 1.02979 0.95605 0.82222 1.45489 1.70568 1.10498 1.15478 1.16479 0.78890 0.83653 0.83751 1.91006 1.61570 1.52017 1.41973 1.22966 0.98601 1.06714 0.95374 1.22712 0.95523 1.01930 1.02271 0.93533 0.97176 0.89680 0.75552 0.88894 0.85201 0.83856 0.82824 0.92471 0.85954 0.89927 0.86755 0.90014 0.87080 0.73957 0.90494 0.90967 0.91092 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.38 10.92 21.45 0.23 -53.14 16 2 C 0.03 1.90 5.13 84.66 0.43 2.33 16 3 Si 0.94 45.70 29.55 68.60 2.03 47.73 16 4 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.26 -11.66 5.71 99.48 0.57 -11.09 16 7 C -0.45 -26.46 8.07 25.60 0.21 -26.25 16 8 H 0.03 2.12 7.88 -2.91 -0.02 2.09 16 9 C 0.03 1.40 1.73 -52.93 -0.09 1.31 16 10 C 0.16 8.37 4.55 86.38 0.39 8.76 16 11 N -0.72 -33.16 5.41 -339.41 -1.84 -35.00 16 12 C 0.22 8.89 6.62 38.21 0.25 9.15 16 13 C -0.24 -9.28 9.31 22.40 0.21 -9.07 16 14 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 15 C -0.20 -4.99 10.04 22.29 0.22 -4.77 16 16 C -0.05 -1.09 9.67 22.25 0.22 -0.88 16 17 C -0.22 -6.77 5.48 -19.74 -0.11 -6.88 16 18 C 0.20 5.73 5.76 85.63 0.49 6.23 16 19 N -0.63 -18.43 2.94 -842.72 -2.48 -20.91 16 20 C 0.09 1.75 7.67 86.65 0.66 2.42 16 21 C 0.09 1.73 8.08 86.58 0.70 2.43 16 22 N -0.76 -24.07 6.39 -476.59 -3.04 -27.11 16 23 C 0.67 25.63 8.60 179.57 1.54 27.17 16 24 O -0.59 -28.33 13.78 -3.99 -0.06 -28.38 16 25 C -0.20 -9.67 9.88 30.59 0.30 -9.37 16 26 C -0.19 -8.88 9.94 30.59 0.30 -8.57 16 27 H 0.26 14.56 8.32 -92.71 -0.77 13.79 16 28 H 0.01 0.51 7.71 -2.39 -0.02 0.49 16 29 H 0.09 4.95 5.21 -2.39 -0.01 4.93 16 30 H 0.40 19.27 3.91 -92.71 -0.36 18.90 16 31 H 0.09 4.00 6.78 -2.91 -0.02 3.98 16 32 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 33 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.06 1.93 6.46 -2.39 -0.02 1.92 16 36 H 0.12 2.26 8.04 -2.39 -0.02 2.25 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.42 14.01 7.53 -92.71 -0.70 13.31 16 42 H 0.08 3.49 8.10 -2.39 -0.02 3.47 16 43 H 0.07 3.56 8.14 -2.39 -0.02 3.54 16 44 H 0.07 3.38 8.14 -2.38 -0.02 3.36 16 45 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 Total: -1.00 -73.66 360.60 0.63 -73.03 By element: Atomic # 1 Polarization: 51.85 SS G_CDS: -0.18 Total: 51.67 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.97 Total: -7.88 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -7.12 Total: -136.17 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.06 Total: -28.38 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.66 0.63 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594702677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.272 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds