Wall clock time and date at job start Tue Mar 31 2020 11:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48502 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47120 * 299.99779 * 3 2 1 6 6 H 1.48497 * 109.47273 * 60.00069 * 3 2 1 7 7 C 1.37876 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47181 * 180.02562 * 9 7 2 11 11 S 1.81393 * 109.47253 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54403 * 68.37356 * 11 10 9 13 13 O 1.42100 * 110.54433 * 291.62752 * 11 10 9 14 14 N 1.65602 * 104.45071 * 179.97438 * 11 10 9 15 15 C 1.46500 * 119.99755 * 65.00070 * 14 11 10 16 16 C 1.52997 * 109.47007 * 215.00078 * 15 14 11 17 17 C 1.53002 * 109.46817 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47233 * 60.00194 * 17 16 15 19 19 C 1.53002 * 109.47233 * 179.97438 * 18 17 16 20 20 C 1.53785 * 113.61112 * 277.49499 * 19 18 17 21 21 C 1.53779 * 87.07854 * 220.01691 * 20 19 18 22 22 C 1.53777 * 87.08356 * 25.43282 * 21 20 19 23 23 C 1.52997 * 109.47060 * 299.99657 * 18 17 16 24 24 C 1.52999 * 109.47317 * 59.99960 * 23 18 17 25 25 H 0.97005 * 120.00413 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46962 * 59.99511 * 9 7 2 27 27 H 1.09004 * 109.47124 * 300.00234 * 9 7 2 28 28 H 1.08997 * 109.47060 * 59.99535 * 10 9 7 29 29 H 1.09004 * 109.47120 * 300.00037 * 10 9 7 30 30 H 0.96996 * 120.00256 * 245.00119 * 14 11 10 31 31 H 1.09002 * 109.47092 * 335.00026 * 15 14 11 32 32 H 1.08993 * 109.47194 * 59.99623 * 16 15 14 33 33 H 1.09002 * 109.46695 * 299.99637 * 16 15 14 34 34 H 1.08992 * 109.47063 * 299.99823 * 17 16 15 35 35 H 1.09004 * 109.46733 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47398 * 59.99826 * 18 17 16 37 37 H 1.09004 * 112.84805 * 48.79478 * 19 18 17 38 38 H 1.09001 * 113.61651 * 334.56696 * 20 19 18 39 39 H 1.09001 * 113.60934 * 105.46822 * 20 19 18 40 40 H 1.09005 * 113.61342 * 270.88516 * 21 20 19 41 41 H 1.08997 * 113.61512 * 139.98666 * 21 20 19 42 42 H 1.08995 * 113.61914 * 220.02103 * 22 21 20 43 43 H 1.09003 * 113.68973 * 89.12299 * 22 21 20 44 44 H 1.08996 * 109.47853 * 180.02562 * 23 18 17 45 45 H 1.09002 * 109.47153 * 300.00319 * 23 18 17 46 46 H 1.09000 * 109.47486 * 180.02562 * 24 23 18 47 47 H 1.09002 * 109.46716 * 60.00091 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 16 1.3384 -5.2330 0.0049 12 8 0.6639 -5.4211 -1.2316 13 8 0.6647 -5.4182 1.2423 14 7 2.5205 -6.3927 0.0052 15 6 3.4197 -6.5217 1.1545 16 6 4.8129 -6.9270 0.6691 17 6 5.7518 -7.0624 1.8696 18 6 5.2121 -8.1320 2.8211 19 6 6.1513 -8.2679 4.0212 20 6 7.3689 -9.1678 3.7518 21 6 7.1764 -9.7203 5.1739 22 6 5.6965 -9.3232 5.0432 23 6 3.8189 -7.7268 3.3065 24 6 2.8800 -7.5913 2.1062 25 1 -0.4851 0.8401 -0.0004 26 1 0.6240 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8720 -3.6035 0.8926 29 1 2.8720 -3.6051 -0.8873 30 1 2.6177 -6.9864 -0.7556 31 1 3.4805 -5.5671 1.6772 32 1 5.1972 -6.1652 -0.0092 33 1 4.7520 -7.8816 0.1465 34 1 5.8127 -6.1081 2.3926 35 1 6.7443 -7.3516 1.5238 36 1 5.1512 -9.0864 2.2980 37 1 6.4070 -7.3077 4.4694 38 1 7.2004 -9.9077 2.9693 39 1 8.2994 -8.6154 3.6202 40 1 7.7136 -9.1576 5.9374 41 1 7.3348 -10.7960 5.2495 42 1 5.2768 -8.8964 5.9540 43 1 5.0696 -10.1048 4.6140 44 1 3.4345 -8.4885 3.9848 45 1 3.8798 -6.7724 3.8296 46 1 1.8875 -7.3021 2.4519 47 1 2.8191 -8.5457 1.5831 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595383708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:36 Heat of formation + Delta-G solvation = -95.694774 kcal Electronic energy + Delta-G solvation = -24885.217827 eV Core-core repulsion = 21386.903900 eV Total energy + Delta-G solvation = -3498.313927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02593 -37.93695 -36.49679 -35.39460 -34.02351 -33.88769 -31.16372 -30.91528 -29.36640 -25.92210 -25.60065 -24.85073 -22.62849 -21.71370 -21.65519 -20.12321 -19.56947 -18.79684 -17.40243 -16.71409 -16.26061 -15.83809 -15.37278 -15.36220 -14.82439 -14.54296 -14.42720 -14.27099 -13.43205 -13.36786 -13.32062 -12.87042 -12.71195 -12.52872 -12.31684 -12.20283 -11.88846 -11.74921 -11.55409 -11.51110 -11.45051 -11.23611 -11.11766 -11.07208 -10.95034 -10.86867 -10.64537 -10.61542 -10.39734 -10.36988 -10.14659 -9.94215 -9.74274 -9.39832 -8.98215 -8.50636 -6.12445 -4.17894 0.83268 3.17324 3.25112 3.32370 3.35737 4.24418 4.28350 4.33470 4.38411 4.42087 4.55942 4.58626 4.72337 4.80687 4.87077 5.00938 5.18613 5.21644 5.23116 5.28588 5.34164 5.40585 5.45286 5.47721 5.49162 5.58516 5.61866 5.67594 5.71374 5.72118 5.77781 5.83247 5.92980 6.01116 6.03567 6.11391 6.18149 6.28813 6.35016 6.41594 6.50504 7.15856 7.30946 7.37155 7.80793 8.17885 8.85809 9.46899 10.98658 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.003007 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.369781 B = 9308.014945 C =10310.401612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.591 4.591 11 S 2.592 3.408 12 O -0.970 6.970 13 O -0.965 6.965 14 N -1.124 6.124 15 C 0.154 3.846 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.078 4.078 19 C -0.105 4.105 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.137 4.137 23 C -0.112 4.112 24 C -0.138 4.138 25 H 0.264 0.736 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.411 0.589 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.542 -19.442 6.733 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.689 3.311 12 O -0.960 6.960 13 O -0.955 6.955 14 N -0.879 5.879 15 C 0.047 3.953 16 C -0.164 4.164 17 C -0.150 4.150 18 C -0.097 4.097 19 C -0.123 4.123 20 C -0.175 4.175 21 C -0.183 4.183 22 C -0.174 4.174 23 C -0.150 4.150 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.244 0.756 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.408 -19.412 6.887 24.577 hybrid contribution 1.104 1.016 -0.356 1.542 sum 14.511 -18.396 6.531 24.323 Atomic orbital electron populations 1.69964 1.06116 1.27079 1.49699 1.25073 0.94969 0.99554 0.94939 0.86421 0.79932 0.83208 0.77765 1.19645 1.20804 1.20792 1.21043 0.93079 0.89780 1.51960 0.92014 1.18962 0.92697 0.90591 0.98877 1.30457 1.13723 1.18263 1.09954 1.05568 0.74742 0.76613 0.74158 1.93548 1.71757 1.85352 1.45381 1.93540 1.71429 1.84952 1.45570 1.55906 1.52861 1.51830 1.27351 1.20753 0.89110 0.99581 0.85877 1.21851 0.94164 1.02195 0.98190 1.21542 0.98391 0.99315 0.95754 1.21212 0.94485 0.98934 0.95052 1.22596 0.95732 0.97971 0.96018 1.22953 0.98306 0.99163 0.97029 1.22820 0.97224 1.00739 0.97488 1.22922 0.96246 0.98931 0.99336 1.21543 0.94081 1.01962 0.97438 1.22090 1.00299 0.99192 0.96114 0.92585 0.94859 0.94828 0.86456 0.86141 0.75621 0.89826 0.91039 0.91432 0.91518 0.91652 0.91194 0.89269 0.90264 0.91771 0.90417 0.91795 0.91633 0.90172 0.91632 0.91591 0.90045 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -11.25 5.90 37.16 0.22 -11.03 16 11 S 2.59 46.16 5.38 -107.50 -0.58 45.58 16 12 O -0.97 -20.28 18.08 -57.54 -1.04 -21.32 16 13 O -0.97 -19.79 17.11 -57.54 -0.98 -20.78 16 14 N -1.12 -14.36 5.36 -4.89 -0.03 -14.39 16 15 C 0.15 1.74 2.56 -67.93 -0.17 1.57 16 16 C -0.12 -1.11 5.45 -26.73 -0.15 -1.26 16 17 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 18 C -0.08 -0.61 1.94 -90.62 -0.18 -0.78 16 19 C -0.10 -0.75 3.13 -89.81 -0.28 -1.03 16 20 C -0.14 -0.90 7.63 -25.92 -0.20 -1.10 16 21 C -0.15 -0.93 8.08 -25.92 -0.21 -1.14 16 22 C -0.14 -0.95 6.68 -25.92 -0.17 -1.12 16 23 C -0.11 -1.03 5.01 -26.73 -0.13 -1.16 16 24 C -0.14 -1.52 5.53 -26.73 -0.15 -1.67 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.12 1.99 7.44 -51.92 -0.39 1.60 16 29 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 30 H 0.41 4.39 8.80 -34.47 -0.30 4.09 16 31 H 0.08 0.97 7.15 -51.93 -0.37 0.60 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.51 7.96 -51.93 -0.41 0.09 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 1.09 7.43 -51.93 -0.39 0.70 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -33.87 379.02 -11.85 -45.72 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.54 Total: 1.44 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: -2.11 Total: -32.33 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.71 Total: -40.21 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -2.02 Total: -42.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 46.16 SS G_CDS: -0.58 Total: 45.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.87 -11.85 -45.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595383708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.977 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds