Wall clock time and date at job start Tue Mar 31 2020 11:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48502 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47120 * 299.99779 * 3 2 1 6 6 H 1.48497 * 109.47273 * 60.00069 * 3 2 1 7 7 C 1.37876 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47181 * 180.02562 * 9 7 2 11 11 S 1.81393 * 109.47253 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54403 * 68.37356 * 11 10 9 13 13 O 1.42100 * 110.54433 * 291.62752 * 11 10 9 14 14 N 1.65602 * 104.45071 * 179.97438 * 11 10 9 15 15 C 1.46500 * 119.99755 * 65.00070 * 14 11 10 16 16 C 1.52997 * 109.47007 * 215.00078 * 15 14 11 17 17 C 1.53002 * 109.46817 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47233 * 60.00194 * 17 16 15 19 19 C 1.53002 * 109.47233 * 179.97438 * 18 17 16 20 20 C 1.53785 * 113.61112 * 277.49499 * 19 18 17 21 21 C 1.53779 * 87.07854 * 220.01691 * 20 19 18 22 22 C 1.53777 * 87.08356 * 25.43282 * 21 20 19 23 23 C 1.52997 * 109.47060 * 299.99657 * 18 17 16 24 24 C 1.52999 * 109.47317 * 59.99960 * 23 18 17 25 25 H 0.97005 * 120.00413 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46962 * 59.99511 * 9 7 2 27 27 H 1.09004 * 109.47124 * 300.00234 * 9 7 2 28 28 H 1.08997 * 109.47060 * 59.99535 * 10 9 7 29 29 H 1.09004 * 109.47120 * 300.00037 * 10 9 7 30 30 H 0.96996 * 120.00256 * 245.00119 * 14 11 10 31 31 H 1.09002 * 109.47092 * 335.00026 * 15 14 11 32 32 H 1.08993 * 109.47194 * 59.99623 * 16 15 14 33 33 H 1.09002 * 109.46695 * 299.99637 * 16 15 14 34 34 H 1.08992 * 109.47063 * 299.99823 * 17 16 15 35 35 H 1.09004 * 109.46733 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47398 * 59.99826 * 18 17 16 37 37 H 1.09004 * 112.84805 * 48.79478 * 19 18 17 38 38 H 1.09001 * 113.61651 * 334.56696 * 20 19 18 39 39 H 1.09001 * 113.60934 * 105.46822 * 20 19 18 40 40 H 1.09005 * 113.61342 * 270.88516 * 21 20 19 41 41 H 1.08997 * 113.61512 * 139.98666 * 21 20 19 42 42 H 1.08995 * 113.61914 * 220.02103 * 22 21 20 43 43 H 1.09003 * 113.68973 * 89.12299 * 22 21 20 44 44 H 1.08996 * 109.47853 * 180.02562 * 23 18 17 45 45 H 1.09002 * 109.47153 * 300.00319 * 23 18 17 46 46 H 1.09000 * 109.47486 * 180.02562 * 24 23 18 47 47 H 1.09002 * 109.46716 * 60.00091 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 16 1.3384 -5.2330 0.0049 12 8 0.6639 -5.4211 -1.2316 13 8 0.6647 -5.4182 1.2423 14 7 2.5205 -6.3927 0.0052 15 6 3.4197 -6.5217 1.1545 16 6 4.8129 -6.9270 0.6691 17 6 5.7518 -7.0624 1.8696 18 6 5.2121 -8.1320 2.8211 19 6 6.1513 -8.2679 4.0212 20 6 7.3689 -9.1678 3.7518 21 6 7.1764 -9.7203 5.1739 22 6 5.6965 -9.3232 5.0432 23 6 3.8189 -7.7268 3.3065 24 6 2.8800 -7.5913 2.1062 25 1 -0.4851 0.8401 -0.0004 26 1 0.6240 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8720 -3.6035 0.8926 29 1 2.8720 -3.6051 -0.8873 30 1 2.6177 -6.9864 -0.7556 31 1 3.4805 -5.5671 1.6772 32 1 5.1972 -6.1652 -0.0092 33 1 4.7520 -7.8816 0.1465 34 1 5.8127 -6.1081 2.3926 35 1 6.7443 -7.3516 1.5238 36 1 5.1512 -9.0864 2.2980 37 1 6.4070 -7.3077 4.4694 38 1 7.2004 -9.9077 2.9693 39 1 8.2994 -8.6154 3.6202 40 1 7.7136 -9.1576 5.9374 41 1 7.3348 -10.7960 5.2495 42 1 5.2768 -8.8964 5.9540 43 1 5.0696 -10.1048 4.6140 44 1 3.4345 -8.4885 3.9848 45 1 3.8798 -6.7724 3.8296 46 1 1.8875 -7.3021 2.4519 47 1 2.8191 -8.5457 1.5831 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595383708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:35 Heat of formation + Delta-G solvation = -117.522199 kcal Electronic energy + Delta-G solvation = -24886.164335 eV Core-core repulsion = 21386.903900 eV Total energy + Delta-G solvation = -3499.260435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66831 -38.70397 -38.04859 -36.98329 -35.89862 -34.94216 -33.13122 -31.65496 -30.19690 -27.60113 -26.44296 -25.52280 -23.62292 -23.35716 -22.42924 -20.91377 -20.21111 -20.08019 -19.05904 -18.23537 -17.57675 -16.99764 -16.57410 -16.50580 -16.22049 -15.82352 -15.31776 -15.06055 -14.96166 -14.49618 -14.17943 -14.09765 -13.75593 -13.71810 -13.23402 -13.19120 -13.13303 -12.99729 -12.97524 -12.93826 -12.79005 -12.60557 -12.38414 -12.25186 -12.10781 -11.97176 -11.84095 -11.75782 -11.50173 -11.30421 -11.23260 -11.11162 -10.75143 -10.66010 -10.57870 -10.21036 -8.26484 -6.40497 -0.65550 1.40746 1.41381 1.54737 1.87250 2.37734 2.82098 3.07074 3.29095 3.66863 3.73218 3.76830 3.89816 3.98264 4.00649 4.10226 4.13513 4.19762 4.28905 4.39196 4.50244 4.61953 4.66729 4.69327 4.75210 4.76596 4.94132 4.97146 4.98214 4.99775 5.12809 5.19061 5.20503 5.26387 5.27453 5.28373 5.32139 5.33668 5.36663 5.54379 5.54906 5.63182 5.68253 5.78868 6.05867 6.19618 6.73560 7.29803 8.86109 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.003007 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.369781 B = 9308.014945 C =10310.401612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.589 4.589 11 S 2.618 3.382 12 O -1.002 7.002 13 O -0.995 6.995 14 N -1.103 6.103 15 C 0.144 3.856 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.072 4.072 19 C -0.105 4.105 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.109 4.109 24 C -0.138 4.138 25 H 0.267 0.733 26 H 0.005 0.995 27 H 0.006 0.994 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.425 0.575 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.493 -20.140 6.692 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.094 0.906 9 C -0.019 4.019 10 C -0.721 4.721 11 S 2.714 3.286 12 O -0.993 6.993 13 O -0.984 6.984 14 N -0.863 5.863 15 C 0.037 3.963 16 C -0.159 4.159 17 C -0.148 4.148 18 C -0.090 4.090 19 C -0.123 4.123 20 C -0.171 4.171 21 C -0.182 4.182 22 C -0.177 4.177 23 C -0.148 4.148 24 C -0.178 4.178 25 H 0.076 0.924 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.261 0.739 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.371 -20.117 6.838 26.823 hybrid contribution 0.176 1.142 -0.307 1.195 sum 16.547 -18.976 6.531 26.011 Atomic orbital electron populations 1.70111 1.08109 1.28266 1.51003 1.26135 0.95861 1.03945 0.94413 0.85256 0.79208 0.77954 0.77780 1.17812 1.20411 1.20366 1.21549 0.93990 0.90752 1.51317 0.90563 1.18819 0.93608 0.93146 0.96298 1.30346 1.12807 1.16694 1.12234 1.04509 0.74795 0.76538 0.72739 1.93497 1.73240 1.85830 1.46689 1.93505 1.72751 1.85364 1.46809 1.55401 1.52112 1.50278 1.28539 1.21055 0.90247 0.99723 0.85283 1.21840 0.92215 1.03060 0.98735 1.21550 0.98808 0.99192 0.95297 1.21159 0.93444 0.99128 0.95310 1.22571 0.96013 0.97972 0.95785 1.22942 0.97994 0.98992 0.97139 1.22830 0.96731 1.01082 0.97597 1.22942 0.96684 0.98922 0.99160 1.21523 0.94747 1.01834 0.96652 1.22073 0.99261 0.99521 0.96898 0.92400 0.97638 0.97544 0.84204 0.83893 0.73897 0.90254 0.90425 0.90046 0.91926 0.90185 0.90553 0.89670 0.89826 0.91468 0.90267 0.91362 0.92038 0.90075 0.91188 0.92343 0.92927 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 4 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.06 4.98 29.85 0.15 1.21 16 10 C -0.59 -22.19 5.90 71.98 0.42 -21.77 16 11 S 2.62 93.49 5.38 -56.49 -0.30 93.19 16 12 O -1.00 -42.32 18.08 -127.65 -2.31 -44.62 16 13 O -0.99 -41.70 17.11 -127.65 -2.18 -43.89 16 14 N -1.10 -26.59 5.36 -169.38 -0.91 -27.49 16 15 C 0.14 3.00 2.56 44.99 0.12 3.12 16 16 C -0.12 -1.76 5.45 30.59 0.17 -1.60 16 17 C -0.11 -1.45 5.20 30.60 0.16 -1.29 16 18 C -0.07 -0.95 1.94 -10.79 -0.02 -0.97 16 19 C -0.11 -1.29 3.13 -10.27 -0.03 -1.32 16 20 C -0.13 -1.43 7.63 31.12 0.24 -1.19 16 21 C -0.14 -1.58 8.08 31.12 0.25 -1.33 16 22 C -0.14 -1.71 6.68 31.12 0.21 -1.50 16 23 C -0.11 -1.86 5.01 30.59 0.15 -1.71 16 24 C -0.14 -2.91 5.53 30.60 0.17 -2.74 16 25 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 26 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 28 H 0.14 4.58 7.44 -2.39 -0.02 4.56 16 29 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 30 H 0.42 8.19 8.80 -96.75 -0.85 7.34 16 31 H 0.08 1.74 7.15 -2.39 -0.02 1.72 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.95 7.94 -2.39 -0.02 0.93 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 0.84 7.96 -2.39 -0.02 0.82 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 44 H 0.07 1.13 7.45 -2.39 -0.02 1.11 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.05 1.42 7.43 -2.39 -0.02 1.40 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -74.16 379.02 -0.64 -74.80 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.08 Total: 20.14 kcal Atomic # 6 Polarization: -63.18 SS G_CDS: 2.68 Total: -60.50 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -0.62 Total: -84.44 kcal Atomic # 8 Polarization: -84.02 SS G_CDS: -4.49 Total: -88.51 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 93.49 SS G_CDS: -0.30 Total: 93.19 kcal Total: -74.16 -0.64 -74.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595383708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.721 kcal (2) G-P(sol) polarization free energy of solvation -74.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds