Wall clock time and date at job start Tue Mar 31 2020 10:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47102 * 2 1 4 4 C 1.46897 * 110.99684 * 73.02195 * 3 2 1 5 5 C 1.50697 * 109.47474 * 285.55516 * 4 3 2 6 6 H 1.08009 * 119.99458 * 358.17815 * 5 4 3 7 7 C 1.37874 * 120.00381 * 178.17851 * 5 4 3 8 8 N 1.31517 * 119.99965 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46760 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47110 * 119.99844 * 9 7 5 12 12 H 1.48497 * 109.47106 * 240.00005 * 9 7 5 13 13 C 1.46903 * 111.00097 * 196.97204 * 3 2 1 14 14 H 1.08995 * 109.47133 * 186.04865 * 13 3 2 15 15 C 1.52996 * 109.47331 * 306.05197 * 13 3 2 16 16 C 1.53001 * 109.46609 * 66.04899 * 13 3 2 17 17 C 1.50697 * 109.47473 * 65.00268 * 16 13 3 18 18 C 1.38234 * 119.99936 * 269.72486 * 17 16 13 19 19 C 1.38231 * 120.00201 * 179.78217 * 18 17 16 20 20 C 1.38239 * 119.99854 * 0.46922 * 19 18 17 21 21 C 1.50698 * 119.99796 * 179.79056 * 20 19 18 22 22 F 1.39901 * 109.47116 * 269.97266 * 21 20 19 23 23 F 1.39895 * 109.47460 * 29.97196 * 21 20 19 24 24 F 1.39901 * 109.47360 * 149.97699 * 21 20 19 25 25 C 1.38234 * 119.99837 * 359.75877 * 20 19 18 26 26 C 1.38231 * 120.00255 * 89.99315 * 17 16 13 27 27 H 1.09001 * 109.46686 * 288.70258 * 1 2 3 28 28 H 1.08995 * 109.47273 * 48.70585 * 1 2 3 29 29 H 1.09002 * 109.47149 * 168.70568 * 1 2 3 30 30 H 1.09004 * 109.46865 * 240.00306 * 2 1 3 31 31 H 1.08994 * 109.47735 * 120.00495 * 2 1 3 32 32 H 1.09003 * 109.47286 * 45.55611 * 4 3 2 33 33 H 1.09001 * 109.47251 * 165.55349 * 4 3 2 34 34 H 0.96999 * 120.00072 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.46912 * 299.99809 * 15 13 3 36 36 H 1.09002 * 109.47236 * 180.02562 * 15 13 3 37 37 H 1.09004 * 109.47417 * 59.99726 * 15 13 3 38 38 H 1.08999 * 109.46906 * 185.00041 * 16 13 3 39 39 H 1.09004 * 109.47348 * 304.99808 * 16 13 3 40 40 H 1.08001 * 119.99857 * 359.97438 * 18 17 16 41 41 H 1.08004 * 120.00483 * 180.24881 * 19 18 17 42 42 H 1.07996 * 119.99621 * 180.02562 * 25 20 19 43 43 H 1.07998 * 120.00427 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8176 2.0147 1.3117 5 6 0.3581 2.3444 1.4912 6 1 -0.3441 2.1365 0.6972 7 6 -0.0809 2.9114 2.6688 8 7 0.7740 3.1641 3.6357 9 14 -1.8902 3.3193 2.8915 10 1 -2.6377 2.9397 1.6657 11 1 -2.4280 2.5665 4.0529 12 1 -2.0430 4.7767 3.1324 13 6 3.4319 1.4441 -0.4003 14 1 3.7987 2.4644 -0.2889 15 6 4.2533 0.5070 0.4873 16 6 3.5662 1.0106 -1.8615 17 6 2.8589 2.0035 -2.7472 18 6 1.5254 1.8212 -3.0627 19 6 0.8753 2.7344 -3.8715 20 6 1.5612 3.8249 -4.3729 21 6 0.8537 4.8179 -5.2585 22 9 0.9774 4.4221 -6.5946 23 9 -0.5004 4.8706 -4.9112 24 9 1.4275 6.0829 -5.0920 25 6 2.8959 4.0047 -4.0612 26 6 3.5448 3.0938 -3.2488 27 1 -0.3633 0.3295 0.9734 28 1 -0.3633 0.6781 -0.7721 29 1 -0.3633 -1.0078 -0.2013 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.1342 1.3283 2.0970 33 1 2.4066 2.9300 1.3699 34 1 0.4653 3.5633 4.4640 35 1 4.1575 0.8159 1.5283 36 1 5.3012 0.5512 0.1905 37 1 3.8865 -0.5134 0.3758 38 1 4.6211 0.9689 -2.1325 39 1 3.1187 0.0251 -1.9907 40 1 0.9907 0.9668 -2.6747 41 1 -0.1676 2.5941 -4.1147 42 1 3.4317 4.8569 -4.4526 43 1 4.5877 3.2342 -3.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595869154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:59 Heat of formation + Delta-G solvation = -129.155825 kcal Electronic energy + Delta-G solvation = -27166.513969 eV Core-core repulsion = 22989.448370 eV Total energy + Delta-G solvation = -4177.065599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.09936 -47.60668 -47.57566 -39.56966 -37.78110 -33.78206 -32.37584 -31.25603 -30.89195 -29.01070 -27.44820 -26.41145 -24.57828 -22.83138 -22.39897 -22.02745 -20.94926 -18.75498 -18.44110 -18.33827 -18.28701 -16.46431 -15.67396 -15.52442 -14.78492 -14.65621 -14.52953 -14.42300 -14.23079 -14.07525 -14.01803 -13.82005 -13.77265 -13.72948 -13.33972 -13.18467 -12.87279 -12.42004 -12.05168 -11.92379 -11.89564 -11.75132 -11.30369 -11.17984 -10.98973 -10.97575 -10.83919 -10.68037 -10.43128 -10.28138 -10.18276 -9.45299 -9.04817 -8.87633 -8.69720 -8.37839 -7.23470 -6.00540 -3.98680 1.10993 1.47178 2.74735 3.31173 3.39581 3.43442 3.65133 3.81800 4.11163 4.42590 4.50514 4.76192 4.92742 4.97475 4.99748 5.32241 5.34910 5.42880 5.50677 5.57724 5.70854 5.73762 5.81056 5.85244 6.05157 6.05635 6.08793 6.18154 6.29727 6.33079 6.36911 6.40314 6.57352 6.58595 6.75828 6.87119 6.97364 7.20325 7.35908 7.37335 7.86245 8.13854 8.21760 8.57316 9.07862 9.63348 11.10239 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004521 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.227720 B = 6191.480213 C = 7594.206711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 N -0.525 5.525 4 C 0.195 3.805 5 C -0.500 4.500 6 H 0.074 0.926 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.084 3.916 14 H 0.077 0.923 15 C -0.182 4.182 16 C -0.081 4.081 17 C -0.021 4.021 18 C -0.087 4.087 19 C -0.070 4.070 20 C -0.196 4.196 21 C 0.509 3.491 22 F -0.183 7.183 23 F -0.178 7.178 24 F -0.180 7.180 25 C -0.074 4.074 26 C -0.125 4.125 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.024 0.976 32 H -0.005 1.005 33 H 0.023 0.977 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 -2.950 -15.891 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.065 4.065 3 N -0.249 5.249 4 C 0.070 3.930 5 C -0.538 4.538 6 H 0.092 0.908 7 C -0.148 4.148 8 N -0.541 5.541 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.026 4.026 14 H 0.095 0.905 15 C -0.241 4.241 16 C -0.118 4.118 17 C -0.021 4.021 18 C -0.105 4.105 19 C -0.088 4.088 20 C -0.197 4.197 21 C 0.455 3.545 22 F -0.164 7.164 23 F -0.159 7.159 24 F -0.162 7.162 25 C -0.092 4.092 26 C -0.143 4.143 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.012 0.988 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.159 -2.577 -16.080 17.083 hybrid contribution -0.628 0.176 0.870 1.088 sum 4.531 -2.400 -15.210 16.051 Atomic orbital electron populations 1.22074 0.95272 0.98484 1.04769 1.21912 0.96384 0.90052 0.98189 1.62389 1.13469 1.15746 1.33330 1.19733 0.97408 0.93388 0.82481 1.21429 0.93371 1.38952 1.00089 0.90822 1.24987 0.97521 0.96124 0.96166 1.69966 1.33967 1.44317 1.05839 0.86555 0.85522 0.78047 0.78026 1.19587 1.21248 1.21154 1.21657 0.90258 0.98989 0.91668 0.90460 1.22472 0.99657 1.00457 1.01508 1.20873 0.99280 0.97505 0.94154 1.19972 0.94061 0.94808 0.93275 1.21014 0.93956 0.99622 0.95915 1.20885 0.99712 0.92531 0.95677 1.19818 0.96305 0.98492 1.05108 1.18395 0.77009 0.80277 0.78839 1.93196 1.95767 1.90709 1.36734 1.93190 1.34318 1.96484 1.91920 1.93173 1.84513 1.43117 1.95366 1.20763 0.92551 0.98851 0.97058 1.20965 1.00304 0.94581 0.98444 0.89492 0.92724 0.95213 0.93272 0.95821 0.98759 0.95915 0.93155 0.91928 0.93204 0.92735 0.90992 0.90547 0.84770 0.85258 0.85416 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.50 37.16 0.32 -2.36 16 2 C 0.06 1.09 4.36 -3.82 -0.02 1.07 16 3 N -0.53 -10.03 3.82 -228.09 -0.87 -10.90 16 4 C 0.19 4.75 4.11 -4.98 -0.02 4.73 16 5 C -0.50 -13.26 7.08 -34.44 -0.24 -13.50 16 6 H 0.07 1.92 5.58 -52.48 -0.29 1.63 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.08 1.32 2.29 -67.71 -0.15 1.17 16 14 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 15 C -0.18 -2.67 8.52 37.16 0.32 -2.35 16 16 C -0.08 -1.01 4.77 -27.88 -0.13 -1.14 16 17 C -0.02 -0.28 4.95 -104.63 -0.52 -0.80 16 18 C -0.09 -1.22 9.32 -39.59 -0.37 -1.59 16 19 C -0.07 -0.96 9.40 -39.58 -0.37 -1.33 16 20 C -0.20 -2.66 5.45 -104.62 -0.57 -3.23 16 21 C 0.51 6.73 3.36 36.00 0.12 6.85 16 22 F -0.18 -2.34 17.30 2.25 0.04 -2.30 16 23 F -0.18 -2.49 16.46 2.25 0.04 -2.46 16 24 F -0.18 -2.42 16.46 2.25 0.04 -2.38 16 25 C -0.07 -0.93 9.40 -39.58 -0.37 -1.30 16 26 C -0.12 -1.55 9.70 -39.59 -0.38 -1.94 16 27 H 0.09 1.85 5.76 -51.93 -0.30 1.55 16 28 H 0.05 0.99 7.59 -51.93 -0.39 0.59 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.72 5.85 -51.93 -0.30 0.42 16 31 H 0.02 0.44 6.96 -51.93 -0.36 0.08 16 32 H -0.01 -0.14 7.17 -51.93 -0.37 -0.51 16 33 H 0.02 0.61 7.76 -51.93 -0.40 0.21 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.76 6.71 -51.93 -0.35 0.41 16 38 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.08 0.92 6.04 -51.93 -0.31 0.61 16 40 H 0.13 1.84 7.86 -52.49 -0.41 1.42 16 41 H 0.13 1.60 7.60 -52.48 -0.40 1.20 16 42 H 0.13 1.36 7.60 -52.49 -0.40 0.97 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -28.58 353.06 -8.12 -36.70 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.90 Total: -0.46 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.50 Total: -14.35 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.14 Total: -36.47 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.11 Total: -7.13 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.58 -8.12 -36.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595869154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.451 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds