Wall clock time and date at job start Tue Mar 31 2020 10:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47102 * 2 1 4 4 C 1.46897 * 110.99684 * 73.02195 * 3 2 1 5 5 C 1.50697 * 109.47474 * 285.55516 * 4 3 2 6 6 H 1.08009 * 119.99458 * 358.17815 * 5 4 3 7 7 C 1.37874 * 120.00381 * 178.17851 * 5 4 3 8 8 N 1.31517 * 119.99965 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46760 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47110 * 119.99844 * 9 7 5 12 12 H 1.48497 * 109.47106 * 240.00005 * 9 7 5 13 13 C 1.46903 * 111.00097 * 196.97204 * 3 2 1 14 14 H 1.08995 * 109.47133 * 186.04865 * 13 3 2 15 15 C 1.52996 * 109.47331 * 306.05197 * 13 3 2 16 16 C 1.53001 * 109.46609 * 66.04899 * 13 3 2 17 17 C 1.50697 * 109.47473 * 65.00268 * 16 13 3 18 18 C 1.38234 * 119.99936 * 269.72486 * 17 16 13 19 19 C 1.38231 * 120.00201 * 179.78217 * 18 17 16 20 20 C 1.38239 * 119.99854 * 0.46922 * 19 18 17 21 21 C 1.50698 * 119.99796 * 179.79056 * 20 19 18 22 22 F 1.39901 * 109.47116 * 269.97266 * 21 20 19 23 23 F 1.39895 * 109.47460 * 29.97196 * 21 20 19 24 24 F 1.39901 * 109.47360 * 149.97699 * 21 20 19 25 25 C 1.38234 * 119.99837 * 359.75877 * 20 19 18 26 26 C 1.38231 * 120.00255 * 89.99315 * 17 16 13 27 27 H 1.09001 * 109.46686 * 288.70258 * 1 2 3 28 28 H 1.08995 * 109.47273 * 48.70585 * 1 2 3 29 29 H 1.09002 * 109.47149 * 168.70568 * 1 2 3 30 30 H 1.09004 * 109.46865 * 240.00306 * 2 1 3 31 31 H 1.08994 * 109.47735 * 120.00495 * 2 1 3 32 32 H 1.09003 * 109.47286 * 45.55611 * 4 3 2 33 33 H 1.09001 * 109.47251 * 165.55349 * 4 3 2 34 34 H 0.96999 * 120.00072 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.46912 * 299.99809 * 15 13 3 36 36 H 1.09002 * 109.47236 * 180.02562 * 15 13 3 37 37 H 1.09004 * 109.47417 * 59.99726 * 15 13 3 38 38 H 1.08999 * 109.46906 * 185.00041 * 16 13 3 39 39 H 1.09004 * 109.47348 * 304.99808 * 16 13 3 40 40 H 1.08001 * 119.99857 * 359.97438 * 18 17 16 41 41 H 1.08004 * 120.00483 * 180.24881 * 19 18 17 42 42 H 1.07996 * 119.99621 * 180.02562 * 25 20 19 43 43 H 1.07998 * 120.00427 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8176 2.0147 1.3117 5 6 0.3581 2.3444 1.4912 6 1 -0.3441 2.1365 0.6972 7 6 -0.0809 2.9114 2.6688 8 7 0.7740 3.1641 3.6357 9 14 -1.8902 3.3193 2.8915 10 1 -2.6377 2.9397 1.6657 11 1 -2.4280 2.5665 4.0529 12 1 -2.0430 4.7767 3.1324 13 6 3.4319 1.4441 -0.4003 14 1 3.7987 2.4644 -0.2889 15 6 4.2533 0.5070 0.4873 16 6 3.5662 1.0106 -1.8615 17 6 2.8589 2.0035 -2.7472 18 6 1.5254 1.8212 -3.0627 19 6 0.8753 2.7344 -3.8715 20 6 1.5612 3.8249 -4.3729 21 6 0.8537 4.8179 -5.2585 22 9 0.9774 4.4221 -6.5946 23 9 -0.5004 4.8706 -4.9112 24 9 1.4275 6.0829 -5.0920 25 6 2.8959 4.0047 -4.0612 26 6 3.5448 3.0938 -3.2488 27 1 -0.3633 0.3295 0.9734 28 1 -0.3633 0.6781 -0.7721 29 1 -0.3633 -1.0078 -0.2013 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.1342 1.3283 2.0970 33 1 2.4066 2.9300 1.3699 34 1 0.4653 3.5633 4.4640 35 1 4.1575 0.8159 1.5283 36 1 5.3012 0.5512 0.1905 37 1 3.8865 -0.5134 0.3758 38 1 4.6211 0.9689 -2.1325 39 1 3.1187 0.0251 -1.9907 40 1 0.9907 0.9668 -2.6747 41 1 -0.1676 2.5941 -4.1147 42 1 3.4317 4.8569 -4.4526 43 1 4.5877 3.2342 -3.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595869154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:58 Heat of formation + Delta-G solvation = -143.105997 kcal Electronic energy + Delta-G solvation = -27167.118893 eV Core-core repulsion = 22989.448370 eV Total energy + Delta-G solvation = -4177.670524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.15283 -48.67537 -48.61811 -40.64343 -39.14494 -35.29872 -34.09162 -32.51132 -31.90057 -30.61187 -28.58749 -28.20269 -25.68054 -24.25188 -23.72037 -23.44311 -22.09576 -20.16053 -19.49078 -19.36502 -19.34443 -18.45200 -16.95146 -16.65101 -16.44275 -15.86753 -15.81588 -15.57744 -15.38744 -15.32059 -15.26046 -15.08526 -14.86250 -14.78882 -14.51675 -14.23081 -14.19715 -14.06445 -13.43981 -13.32966 -13.07501 -13.05860 -12.87118 -12.74826 -12.60239 -12.50778 -12.10218 -12.05759 -11.92471 -11.69106 -11.63997 -11.16323 -10.92904 -10.49102 -9.87267 -9.74903 -8.83334 -8.12371 -6.16683 0.08854 0.48000 1.39227 1.41828 1.53054 1.70599 2.43089 2.63363 2.78654 3.07006 3.20306 3.37802 3.46920 3.89120 3.95573 4.02944 4.14982 4.35312 4.39252 4.47745 4.53738 4.55542 4.70353 4.76593 4.78014 4.89989 4.93237 5.00010 5.04735 5.14454 5.20346 5.27541 5.30811 5.33972 5.38080 5.41021 5.50845 5.74075 5.76797 5.80870 5.98646 6.20156 6.52329 6.80626 6.99210 7.49856 8.98252 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004521 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.227720 B = 6191.480213 C = 7594.206711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 N -0.526 5.526 4 C 0.214 3.786 5 C -0.500 4.500 6 H 0.077 0.923 7 C -0.002 4.002 8 N -0.940 5.940 9 Si 0.952 3.048 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.286 1.286 13 C 0.080 3.920 14 H 0.060 0.940 15 C -0.174 4.174 16 C -0.069 4.069 17 C -0.033 4.033 18 C -0.099 4.099 19 C -0.082 4.082 20 C -0.207 4.207 21 C 0.512 3.488 22 F -0.180 7.180 23 F -0.184 7.184 24 F -0.182 7.182 25 C -0.079 4.079 26 C -0.126 4.126 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.010 0.990 32 H -0.036 1.036 33 H -0.010 1.010 34 H 0.259 0.741 35 H 0.026 0.974 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.818 -3.863 -17.718 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 N -0.250 5.250 4 C 0.088 3.912 5 C -0.538 4.538 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.778 3.222 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.213 1.213 13 C -0.029 4.029 14 H 0.078 0.922 15 C -0.233 4.233 16 C -0.106 4.106 17 C -0.033 4.033 18 C -0.117 4.117 19 C -0.101 4.101 20 C -0.208 4.208 21 C 0.458 3.542 22 F -0.161 7.161 23 F -0.166 7.166 24 F -0.163 7.163 25 C -0.097 4.097 26 C -0.143 4.143 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.029 0.971 32 H -0.018 1.018 33 H 0.008 0.992 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.519 -3.503 -17.934 19.088 hybrid contribution -0.689 0.451 1.379 1.606 sum 4.831 -3.052 -16.555 17.513 Atomic orbital electron populations 1.21965 0.95671 1.00157 1.02347 1.21973 0.96068 0.89014 0.99307 1.62285 1.16273 1.16827 1.29601 1.19305 0.95711 0.91681 0.84517 1.21784 0.94479 1.37660 0.99890 0.90459 1.25796 1.01546 0.96414 0.96147 1.70096 1.35927 1.45768 1.06416 0.85581 0.80820 0.77505 0.78279 1.18482 1.20836 1.21268 1.21744 0.88205 0.98655 0.94272 0.92213 1.22380 1.01496 1.00352 0.99097 1.20808 1.01349 0.97481 0.90949 1.20160 0.94044 0.95482 0.93653 1.21134 0.94461 0.99863 0.96279 1.21036 1.00227 0.92800 0.95993 1.19958 0.96904 0.98555 1.05406 1.18368 0.76684 0.80206 0.78946 1.93200 1.95724 1.90669 1.36531 1.93175 1.34864 1.96514 1.92005 1.93168 1.84491 1.43237 1.95393 1.21052 0.92323 0.99465 0.96874 1.21281 1.01479 0.93895 0.97670 0.93304 0.92966 0.92118 0.89436 0.97149 1.01815 0.99224 0.93253 0.95443 0.90119 0.91766 0.87838 0.89463 0.84716 0.84681 0.83679 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 8.50 71.98 0.61 -4.38 16 2 C 0.06 2.13 4.36 86.30 0.38 2.51 16 3 N -0.53 -19.91 3.82 -875.53 -3.35 -23.26 16 4 C 0.21 10.82 4.11 85.56 0.35 11.17 16 5 C -0.50 -27.05 7.08 25.60 0.18 -26.87 16 6 H 0.08 4.06 5.58 -2.91 -0.02 4.04 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -56.62 13.29 21.45 0.28 -56.33 16 9 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 13 C 0.08 2.42 2.29 44.91 0.10 2.53 16 14 H 0.06 2.02 7.84 -2.39 -0.02 2.00 16 15 C -0.17 -4.87 8.52 71.98 0.61 -4.26 16 16 C -0.07 -1.49 4.77 29.85 0.14 -1.35 16 17 C -0.03 -0.81 4.95 -19.87 -0.10 -0.91 16 18 C -0.10 -2.60 9.32 22.27 0.21 -2.40 16 19 C -0.08 -2.16 9.40 22.27 0.21 -1.95 16 20 C -0.21 -5.33 5.45 -19.87 -0.11 -5.44 16 21 C 0.51 12.97 3.36 71.24 0.24 13.21 16 22 F -0.18 -4.37 17.30 44.97 0.78 -3.60 16 23 F -0.18 -5.03 16.46 44.97 0.74 -4.28 16 24 F -0.18 -4.64 16.46 44.97 0.74 -3.90 16 25 C -0.08 -1.83 9.40 22.27 0.21 -1.62 16 26 C -0.13 -2.79 9.70 22.27 0.22 -2.57 16 27 H 0.05 2.06 5.76 -2.39 -0.01 2.05 16 28 H 0.05 1.82 7.59 -2.39 -0.02 1.80 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.27 5.85 -2.38 -0.01 2.26 16 31 H 0.01 0.37 6.96 -2.39 -0.02 0.36 16 32 H -0.04 -2.00 7.17 -2.39 -0.02 -2.02 16 33 H -0.01 -0.58 7.76 -2.39 -0.02 -0.60 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.03 0.94 7.13 -2.38 -0.02 0.92 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.66 6.71 -2.38 -0.02 1.64 16 38 H 0.10 1.66 8.09 -2.39 -0.02 1.64 16 39 H 0.09 1.73 6.04 -2.38 -0.01 1.71 16 40 H 0.14 3.42 7.86 -2.91 -0.02 3.40 16 41 H 0.14 3.25 7.60 -2.91 -0.02 3.22 16 42 H 0.15 2.77 7.60 -2.91 -0.02 2.74 16 43 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -63.46 353.06 5.96 -57.50 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.02 Total: 9.36 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 3.72 Total: -22.01 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -3.06 Total: -79.59 kcal Atomic # 9 Polarization: -14.04 SS G_CDS: 2.26 Total: -11.78 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -63.46 5.96 -57.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595869154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.603 kcal (2) G-P(sol) polarization free energy of solvation -63.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds