Wall clock time and date at job start Tue Mar 31 2020 11:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48496 * 109.47210 * 239.99814 * 3 2 1 5 5 H 1.48507 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46980 * 119.99664 * 3 2 1 7 7 C 1.37879 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00005 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.52285 * 60.07408 * 9 7 2 11 11 C 1.53035 * 109.49968 * 180.16253 * 9 7 2 12 12 C 1.53042 * 109.54009 * 181.31708 * 11 9 7 13 13 C 1.53188 * 109.31214 * 298.63263 * 12 11 9 14 14 N 1.46926 * 108.77686 * 54.63293 * 13 12 11 15 15 C 1.34779 * 120.63130 * 126.36895 * 14 13 12 16 16 O 1.21576 * 120.00040 * 175.00573 * 15 14 13 17 17 N 1.34781 * 119.99622 * 355.01121 * 15 14 13 18 18 C 1.39396 * 119.99632 * 186.12825 * 17 15 14 19 19 C 1.39074 * 119.72868 * 17.99701 * 18 17 15 20 20 C 1.38303 * 119.04812 * 179.79318 * 19 18 17 21 21 C 1.38716 * 118.68624 * 0.46642 * 20 19 18 22 22 C 1.38187 * 119.16125 * 359.76075 * 21 20 19 23 23 N 1.31916 * 120.86112 * 0.02562 * 22 21 20 24 24 C 1.51203 * 109.63792 * 179.75695 * 21 20 19 25 25 C 1.54389 * 105.21245 * 342.89359 * 24 21 20 26 26 C 1.51072 * 131.47316 * 180.13380 * 20 19 18 27 27 C 1.46924 * 118.74008 * 306.39454 * 14 13 12 28 28 H 0.97001 * 119.99865 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.46249 * 61.29192 * 11 9 7 30 30 H 1.09001 * 109.44520 * 301.32766 * 11 9 7 31 31 H 1.08999 * 109.49749 * 178.68019 * 12 11 9 32 32 H 1.09004 * 109.49818 * 58.58318 * 12 11 9 33 33 H 1.09004 * 109.58735 * 294.84682 * 13 12 11 34 34 H 1.08998 * 109.70440 * 174.49049 * 13 12 11 35 35 H 0.96995 * 119.99913 * 6.12874 * 17 15 14 36 36 H 1.07995 * 120.47829 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.57155 * 179.97438 * 22 21 20 38 38 H 1.09001 * 110.29529 * 101.82454 * 24 21 20 39 39 H 1.09003 * 110.29769 * 223.95919 * 24 21 20 40 40 H 1.08996 * 110.80797 * 267.98206 * 25 24 21 41 41 H 1.08999 * 110.80341 * 144.47968 * 25 24 21 42 42 H 1.08998 * 110.30536 * 316.29647 * 26 20 19 43 43 H 1.09006 * 110.30203 * 78.45432 * 26 20 19 44 44 H 1.08998 * 109.58925 * 173.39376 * 27 14 13 45 45 H 1.09001 * 109.58509 * 293.81665 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6254 -2.5585 -0.8901 11 6 2.2450 -3.6628 0.0053 12 6 1.4811 -4.9885 -0.0279 13 6 0.6023 -5.0983 1.2221 14 7 -0.2565 -3.9088 1.3023 15 6 -1.5933 -4.0337 1.4204 16 8 -2.2846 -3.0459 1.5771 17 7 -2.1636 -5.2536 1.3648 18 6 -3.5524 -5.3740 1.3583 19 6 -4.3385 -4.2736 1.0339 20 6 -5.7148 -4.4099 1.0276 21 6 -6.2634 -5.6410 1.3557 22 6 -5.4219 -6.6903 1.6725 23 7 -4.1122 -6.5329 1.6664 24 6 -7.7718 -5.5589 1.2900 25 6 -8.0968 -4.0498 1.3146 26 6 -6.8166 -3.4228 0.7213 27 6 0.3696 -2.5806 1.2509 28 1 -0.4850 0.8401 0.0004 29 1 2.8536 -3.6169 0.9083 30 1 2.8895 -3.5931 -0.8710 31 1 2.1898 -5.8164 -0.0481 32 1 0.8533 -5.0246 -0.9183 33 1 1.2336 -5.1536 2.1089 34 1 -0.0174 -5.9927 1.1583 35 1 -1.6077 -6.0477 1.3293 36 1 -3.8808 -3.3271 0.7868 37 1 -5.8419 -7.6516 1.9294 38 1 -8.1350 -6.0088 0.3660 39 1 -8.2154 -6.0553 2.1530 40 1 -8.2591 -3.7053 2.3359 41 1 -8.9616 -3.8298 0.6887 42 1 -6.6090 -2.4645 1.1975 43 1 -6.9219 -3.2958 -0.3562 44 1 -0.4035 -1.8138 1.2035 45 1 0.9820 -2.4307 2.1401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596920435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:06 Heat of formation + Delta-G solvation = 14.591438 kcal Electronic energy + Delta-G solvation = -26389.849920 eV Core-core repulsion = 22793.167162 eV Total energy + Delta-G solvation = -3596.682758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99949 -39.74970 -37.38368 -36.46194 -34.26631 -33.30295 -31.99808 -31.15678 -29.87760 -29.34371 -27.25719 -25.14307 -24.67614 -23.56630 -21.97116 -21.55834 -20.94270 -20.12001 -19.01782 -18.01174 -17.06722 -16.27332 -16.14213 -15.80364 -15.20475 -14.98157 -14.62039 -14.45382 -14.15556 -13.85346 -13.71224 -13.51100 -13.06924 -12.85192 -12.80823 -12.63639 -12.32332 -12.10864 -11.95612 -11.50730 -11.31215 -11.29573 -11.03010 -10.93970 -10.57867 -10.46308 -10.32708 -10.21737 -9.95233 -9.65527 -9.35573 -9.18234 -9.12486 -9.02280 -8.47361 -8.08418 -7.71343 -6.03223 -4.11943 1.28241 1.43647 2.75577 3.30582 3.36615 3.37753 3.43817 4.04766 4.05595 4.38255 4.41373 4.45744 4.73391 4.87489 5.04971 5.07410 5.16588 5.27199 5.34994 5.40761 5.53163 5.57361 5.60418 5.65703 5.77606 5.89087 5.91896 5.99436 6.05828 6.10326 6.15105 6.25308 6.37292 6.48506 6.57816 6.61889 6.72175 6.90829 6.93352 7.10411 7.20764 7.27386 7.63412 7.83257 7.94453 8.07763 8.34575 8.37439 8.89321 8.94795 9.53865 11.02115 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.003478 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.329465 B = 8048.947644 C = 9498.378132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.110 3.890 14 N -0.611 5.611 15 C 0.703 3.297 16 O -0.560 6.560 17 N -0.672 5.672 18 C 0.380 3.620 19 C -0.172 4.172 20 C -0.036 4.036 21 C -0.191 4.191 22 C 0.135 3.865 23 N -0.523 5.523 24 C -0.068 4.068 25 C -0.120 4.120 26 C -0.085 4.085 27 C 0.127 3.873 28 H 0.265 0.735 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.407 0.593 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.247 -12.984 2.152 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.014 4.014 14 N -0.347 5.347 15 C 0.405 3.595 16 O -0.437 6.437 17 N -0.322 5.322 18 C 0.148 3.852 19 C -0.194 4.194 20 C -0.044 4.044 21 C -0.194 4.194 22 C -0.022 4.022 23 N -0.238 5.238 24 C -0.106 4.106 25 C -0.158 4.158 26 C -0.122 4.122 27 C 0.007 3.993 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.191 0.809 37 H 0.170 0.830 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.143 0.857 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.218 -12.761 2.470 17.169 hybrid contribution 0.425 0.970 -0.176 1.073 sum -10.793 -11.791 2.295 16.149 Atomic orbital electron populations 1.69864 1.05741 1.27028 1.49126 1.25050 0.94898 0.99279 0.94735 0.86639 0.79575 0.83092 0.78589 1.20284 1.21239 1.20228 1.21028 0.92904 0.90040 1.52090 0.92335 1.18992 0.92607 0.92346 0.93982 0.95247 1.21627 0.98572 0.93918 1.00736 1.21949 0.98623 0.99349 0.97239 1.21617 0.93490 0.87114 0.99164 1.47891 1.02844 1.09618 1.74302 1.15808 0.83034 0.82158 0.78512 1.90813 1.60670 1.36433 1.55740 1.42706 1.04035 1.09424 1.76061 1.17929 0.83910 0.89968 0.93358 1.22149 0.92321 1.02140 1.02806 1.20746 0.93613 0.95435 0.94646 1.21389 0.97037 0.95295 1.05723 1.21690 0.86702 0.97921 0.95883 1.67032 1.13414 1.24665 1.18724 1.20849 0.90631 0.96976 1.02155 1.22325 0.97208 0.94676 1.01543 1.21052 0.91537 0.97825 1.01763 1.22340 0.98486 0.79845 0.98634 0.92543 0.93048 0.92868 0.92019 0.92054 0.91498 0.92010 0.75403 0.80939 0.83002 0.90501 0.90883 0.90927 0.90487 0.89948 0.89663 0.85729 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.08 11.39 55.43 0.63 -24.45 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.81 8.56 -34.44 -0.29 -14.11 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 12 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 13 C 0.11 1.66 6.43 -3.71 -0.02 1.64 16 14 N -0.61 -12.02 2.97 -178.50 -0.53 -12.55 16 15 C 0.70 14.30 8.14 -86.91 -0.71 13.59 16 16 O -0.56 -13.32 12.58 5.30 0.07 -13.26 16 17 N -0.67 -11.36 5.33 -15.80 -0.08 -11.45 16 18 C 0.38 6.54 7.53 -154.71 -1.16 5.38 16 19 C -0.17 -3.03 8.83 -39.25 -0.35 -3.37 16 20 C -0.04 -0.53 6.20 -104.24 -0.65 -1.17 16 21 C -0.19 -2.39 6.18 -104.22 -0.64 -3.03 16 22 C 0.14 1.75 11.18 -17.53 -0.20 1.55 16 23 N -0.52 -8.12 10.38 -12.34 -0.13 -8.24 16 24 C -0.07 -0.61 6.76 -26.91 -0.18 -0.79 16 25 C -0.12 -1.04 7.08 -25.27 -0.18 -1.22 16 26 C -0.08 -0.96 6.76 -26.97 -0.18 -1.14 16 27 C 0.13 2.99 5.39 -3.71 -0.02 2.97 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.76 5.57 -51.93 -0.29 0.47 16 35 H 0.41 5.77 6.28 -40.82 -0.26 5.51 16 36 H 0.17 3.52 5.31 -52.51 -0.28 3.25 16 37 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.12 3.43 5.15 -51.93 -0.27 3.16 16 45 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -30.82 353.56 -11.48 -42.30 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.55 Total: 8.24 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -5.19 Total: -1.82 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.11 Total: -56.69 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.26 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.82 -11.48 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596920435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.887 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds