Wall clock time and date at job start Tue Mar 31 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48496 * 109.47210 * 239.99814 * 3 2 1 5 5 H 1.48507 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46980 * 119.99664 * 3 2 1 7 7 C 1.37879 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00005 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.52285 * 60.07408 * 9 7 2 11 11 C 1.53035 * 109.49968 * 180.16253 * 9 7 2 12 12 C 1.53042 * 109.54009 * 181.31708 * 11 9 7 13 13 C 1.53188 * 109.31214 * 298.63263 * 12 11 9 14 14 N 1.46926 * 108.77686 * 54.63293 * 13 12 11 15 15 C 1.34779 * 120.63130 * 126.36895 * 14 13 12 16 16 O 1.21576 * 120.00040 * 175.00573 * 15 14 13 17 17 N 1.34781 * 119.99622 * 355.01121 * 15 14 13 18 18 C 1.39396 * 119.99632 * 186.12825 * 17 15 14 19 19 C 1.39074 * 119.72868 * 17.99701 * 18 17 15 20 20 C 1.38303 * 119.04812 * 179.79318 * 19 18 17 21 21 C 1.38716 * 118.68624 * 0.46642 * 20 19 18 22 22 C 1.38187 * 119.16125 * 359.76075 * 21 20 19 23 23 N 1.31916 * 120.86112 * 0.02562 * 22 21 20 24 24 C 1.51203 * 109.63792 * 179.75695 * 21 20 19 25 25 C 1.54389 * 105.21245 * 342.89359 * 24 21 20 26 26 C 1.51072 * 131.47316 * 180.13380 * 20 19 18 27 27 C 1.46924 * 118.74008 * 306.39454 * 14 13 12 28 28 H 0.97001 * 119.99865 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.46249 * 61.29192 * 11 9 7 30 30 H 1.09001 * 109.44520 * 301.32766 * 11 9 7 31 31 H 1.08999 * 109.49749 * 178.68019 * 12 11 9 32 32 H 1.09004 * 109.49818 * 58.58318 * 12 11 9 33 33 H 1.09004 * 109.58735 * 294.84682 * 13 12 11 34 34 H 1.08998 * 109.70440 * 174.49049 * 13 12 11 35 35 H 0.96995 * 119.99913 * 6.12874 * 17 15 14 36 36 H 1.07995 * 120.47829 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.57155 * 179.97438 * 22 21 20 38 38 H 1.09001 * 110.29529 * 101.82454 * 24 21 20 39 39 H 1.09003 * 110.29769 * 223.95919 * 24 21 20 40 40 H 1.08996 * 110.80797 * 267.98206 * 25 24 21 41 41 H 1.08999 * 110.80341 * 144.47968 * 25 24 21 42 42 H 1.08998 * 110.30536 * 316.29647 * 26 20 19 43 43 H 1.09006 * 110.30203 * 78.45432 * 26 20 19 44 44 H 1.08998 * 109.58925 * 173.39376 * 27 14 13 45 45 H 1.09001 * 109.58509 * 293.81665 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6254 -2.5585 -0.8901 11 6 2.2450 -3.6628 0.0053 12 6 1.4811 -4.9885 -0.0279 13 6 0.6023 -5.0983 1.2221 14 7 -0.2565 -3.9088 1.3023 15 6 -1.5933 -4.0337 1.4204 16 8 -2.2846 -3.0459 1.5771 17 7 -2.1636 -5.2536 1.3648 18 6 -3.5524 -5.3740 1.3583 19 6 -4.3385 -4.2736 1.0339 20 6 -5.7148 -4.4099 1.0276 21 6 -6.2634 -5.6410 1.3557 22 6 -5.4219 -6.6903 1.6725 23 7 -4.1122 -6.5329 1.6664 24 6 -7.7718 -5.5589 1.2900 25 6 -8.0968 -4.0498 1.3146 26 6 -6.8166 -3.4228 0.7213 27 6 0.3696 -2.5806 1.2509 28 1 -0.4850 0.8401 0.0004 29 1 2.8536 -3.6169 0.9083 30 1 2.8895 -3.5931 -0.8710 31 1 2.1898 -5.8164 -0.0481 32 1 0.8533 -5.0246 -0.9183 33 1 1.2336 -5.1536 2.1089 34 1 -0.0174 -5.9927 1.1583 35 1 -1.6077 -6.0477 1.3293 36 1 -3.8808 -3.3271 0.7868 37 1 -5.8419 -7.6516 1.9294 38 1 -8.1350 -6.0088 0.3660 39 1 -8.2154 -6.0553 2.1530 40 1 -8.2591 -3.7053 2.3359 41 1 -8.9616 -3.8298 0.6887 42 1 -6.6090 -2.4645 1.1975 43 1 -6.9219 -3.2958 -0.3562 44 1 -0.4035 -1.8138 1.2035 45 1 0.9820 -2.4307 2.1401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596920435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:05 Heat of formation + Delta-G solvation = -2.944801 kcal Electronic energy + Delta-G solvation = -26390.610349 eV Core-core repulsion = 22793.167162 eV Total energy + Delta-G solvation = -3597.443187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.29329 -41.08967 -38.83167 -37.67711 -35.78509 -35.04805 -33.59240 -32.31313 -31.56822 -30.41199 -28.31729 -27.03537 -26.19210 -24.68240 -23.55717 -22.83622 -21.80390 -21.62341 -20.56206 -19.44953 -18.55904 -18.09661 -17.37545 -16.86257 -16.73977 -16.47290 -16.08289 -15.82460 -15.44121 -15.27450 -15.04036 -14.93738 -14.47880 -14.33891 -14.03951 -13.87235 -13.69364 -13.60331 -13.00693 -12.85816 -12.72369 -12.52357 -12.31735 -12.25509 -12.17658 -12.05612 -11.87707 -11.65623 -11.48398 -11.16918 -10.99755 -10.90293 -10.59305 -10.52448 -10.30192 -9.59636 -9.04700 -8.11163 -6.28010 0.10928 0.27871 1.31417 1.42016 1.43834 1.51225 1.94171 2.41593 2.68438 2.83604 3.17706 3.39479 3.58615 3.70058 3.95557 3.99090 4.09542 4.11768 4.18673 4.24691 4.37416 4.55914 4.67180 4.67664 4.72605 4.77234 4.80194 4.82852 4.91417 4.94654 5.07911 5.08603 5.15391 5.21814 5.23779 5.27891 5.31043 5.36880 5.43346 5.54347 5.57145 5.75208 5.86489 5.90002 6.02465 6.32743 6.67908 6.84585 7.03860 7.36437 7.42535 8.92079 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.003478 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.329465 B = 8048.947644 C = 9498.378132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.039 3.961 10 H -0.013 1.013 11 C -0.106 4.106 12 C -0.125 4.125 13 C 0.104 3.896 14 N -0.614 5.614 15 C 0.699 3.301 16 O -0.605 6.605 17 N -0.657 5.657 18 C 0.355 3.645 19 C -0.204 4.204 20 C -0.051 4.051 21 C -0.179 4.179 22 C 0.134 3.866 23 N -0.526 5.526 24 C -0.064 4.064 25 C -0.112 4.112 26 C -0.091 4.091 27 C 0.142 3.858 28 H 0.260 0.740 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.420 0.580 36 H 0.133 0.867 37 H 0.196 0.804 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 -15.896 2.643 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.020 3.980 10 H 0.005 0.995 11 C -0.143 4.143 12 C -0.163 4.163 13 C -0.018 4.018 14 N -0.349 5.349 15 C 0.400 3.600 16 O -0.484 6.484 17 N -0.308 5.308 18 C 0.125 3.875 19 C -0.227 4.227 20 C -0.059 4.059 21 C -0.183 4.183 22 C -0.023 4.023 23 N -0.241 5.241 24 C -0.101 4.101 25 C -0.149 4.149 26 C -0.128 4.128 27 C 0.020 3.980 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.261 0.739 36 H 0.151 0.849 37 H 0.212 0.788 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.034 -15.739 2.956 20.032 hybrid contribution 0.572 1.827 -0.347 1.946 sum -11.462 -13.912 2.609 18.213 Atomic orbital electron populations 1.70071 1.07398 1.27338 1.50477 1.25885 0.95546 1.02888 0.94543 0.85625 0.78276 0.78793 0.79070 1.19346 1.21549 1.19210 1.21480 0.93350 0.91373 1.51273 0.91820 1.18918 0.93062 0.93892 0.92153 0.99475 1.21519 0.97672 0.93928 1.01210 1.21904 0.98946 0.98573 0.96859 1.21987 0.93654 0.86197 0.99966 1.47770 1.03173 1.09775 1.74218 1.15948 0.83056 0.82661 0.78309 1.90806 1.61806 1.38330 1.57507 1.42333 1.04405 1.08466 1.75612 1.17993 0.83765 0.90693 0.95042 1.21941 0.94207 1.01066 1.05514 1.21163 0.92894 0.97697 0.94168 1.21904 0.99340 0.93836 1.03181 1.22476 0.85842 0.99713 0.94318 1.67106 1.14883 1.23352 1.18734 1.20983 0.87517 0.97295 1.04319 1.22366 0.96251 0.94277 1.02051 1.21212 0.92204 0.96973 1.02418 1.21741 0.96973 0.81098 0.98176 0.93128 0.92123 0.92755 0.87456 0.93165 0.89407 0.88622 0.73852 0.84918 0.78764 0.88376 0.88353 0.90621 0.87812 0.91196 0.88940 0.90274 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.40 11.39 21.45 0.24 -55.15 16 2 C 0.01 0.62 5.30 84.65 0.45 1.06 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.54 -29.28 8.56 25.60 0.22 -29.06 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 1.95 2.25 -11.46 -0.03 1.93 16 10 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 11 C -0.11 -3.99 5.11 30.62 0.16 -3.83 16 12 C -0.12 -3.61 6.08 30.67 0.19 -3.42 16 13 C 0.10 2.96 6.43 86.36 0.56 3.51 16 14 N -0.61 -24.99 2.97 -836.91 -2.49 -27.47 16 15 C 0.70 30.10 8.14 179.05 1.46 31.56 16 16 O -0.61 -31.54 12.58 -3.96 -0.05 -31.59 16 17 N -0.66 -22.79 5.33 -322.18 -1.72 -24.51 16 18 C 0.35 12.57 7.53 132.93 1.00 13.57 16 19 C -0.20 -7.72 8.83 22.49 0.20 -7.52 16 20 C -0.05 -1.50 6.20 -19.62 -0.12 -1.63 16 21 C -0.18 -4.09 6.18 -19.60 -0.12 -4.21 16 22 C 0.13 3.09 11.18 84.67 0.95 4.04 16 23 N -0.53 -15.68 10.38 -192.94 -2.00 -17.69 16 24 C -0.06 -0.88 6.76 30.48 0.21 -0.67 16 25 C -0.11 -1.63 7.08 31.54 0.22 -1.40 16 26 C -0.09 -2.06 6.76 30.44 0.21 -1.85 16 27 C 0.14 7.09 5.39 86.36 0.47 7.56 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.10 2.09 5.57 -2.39 -0.01 2.07 16 35 H 0.42 11.58 6.28 -92.71 -0.58 11.00 16 36 H 0.13 6.11 5.31 -3.31 -0.02 6.10 16 37 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.08 4.73 5.15 -2.39 -0.01 4.71 16 45 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -74.79 353.56 2.44 -72.35 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.43 Total: 28.31 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.00 Total: 9.63 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -5.96 Total: -124.82 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.05 Total: -31.59 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -74.79 2.44 -72.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596920435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.401 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds