Wall clock time and date at job start Tue Mar 31 2020 11:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00076 * 2 1 4 4 C 1.52999 * 109.47307 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47140 * 65.00012 * 4 3 2 6 6 C 1.46493 * 119.99826 * 269.99866 * 5 4 3 7 7 C 1.50705 * 109.47396 * 270.00114 * 6 5 4 8 8 H 1.08003 * 119.99488 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00182 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00116 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00036 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47237 * 90.00624 * 11 9 7 13 13 H 1.48499 * 109.47481 * 210.00685 * 11 9 7 14 14 H 1.48500 * 109.47210 * 330.00655 * 11 9 7 15 15 C 1.34777 * 119.99754 * 89.99838 * 5 4 3 16 16 O 1.21286 * 119.99889 * 179.97438 * 15 5 4 17 17 C 1.50695 * 120.00264 * 0.02562 * 15 5 4 18 18 H 1.09004 * 115.53872 * 325.58831 * 17 15 5 19 19 C 1.56317 * 117.06882 * 112.18950 * 17 15 5 20 20 H 1.08991 * 119.19093 * 356.98084 * 19 17 15 21 21 C 1.50949 * 119.07168 * 200.85797 * 19 17 15 22 22 C 1.38790 * 129.73213 * 116.16321 * 21 19 17 23 23 C 1.38016 * 120.31874 * 180.20211 * 22 21 19 24 24 C 1.38253 * 119.88710 * 359.42441 * 23 22 21 25 25 C 1.38021 * 119.87170 * 0.28047 * 24 23 22 26 26 C 1.37808 * 110.47645 * 295.82110 * 21 19 17 27 27 C 1.50968 * 110.46443 * 0.05849 * 26 21 19 28 28 C 1.53046 * 117.48225 * 179.97438 * 17 15 5 29 29 H 1.08994 * 119.41347 * 5.41732 * 28 17 15 30 30 H 1.09001 * 109.47258 * 299.99700 * 1 2 3 31 31 H 1.08997 * 109.47518 * 60.00273 * 1 2 3 32 32 H 1.09008 * 109.46817 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47087 * 59.99935 * 3 2 1 34 34 H 1.09000 * 109.46926 * 300.00216 * 3 2 1 35 35 H 1.09003 * 109.47143 * 305.00060 * 4 3 2 36 36 H 1.08999 * 109.47059 * 185.00082 * 4 3 2 37 37 H 1.08999 * 109.47444 * 30.00166 * 6 5 4 38 38 H 1.09003 * 109.47221 * 150.00140 * 6 5 4 39 39 H 0.96998 * 120.00127 * 179.97438 * 10 9 7 40 40 H 1.08000 * 119.84138 * 359.91597 * 22 21 19 41 41 H 1.08002 * 120.06151 * 179.71012 * 23 22 21 42 42 H 1.07989 * 120.06527 * 180.25229 * 24 23 22 43 43 H 1.08003 * 119.83706 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.92549 * 119.67072 * 27 26 21 45 45 H 1.09003 * 109.91512 * 240.77385 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1052 -0.8919 -1.3427 7 6 5.5010 -1.2977 -0.9449 8 1 6.2198 -0.5457 -0.6544 9 6 5.8607 -2.6287 -0.9526 10 7 7.0785 -2.9828 -0.6049 11 14 4.6176 -3.9291 -1.4556 12 1 4.7022 -4.1543 -2.9210 13 1 4.9122 -5.1977 -0.7421 14 1 3.2502 -3.4693 -1.1036 15 6 4.2614 1.3339 -2.3218 16 8 4.6263 0.8205 -3.3583 17 6 4.1286 2.8321 -2.2290 18 1 3.3186 3.1938 -1.5956 19 6 5.4474 3.6686 -2.2968 20 1 6.4038 3.1494 -2.3568 21 6 5.4528 5.0751 -1.7488 22 6 6.1667 5.6101 -0.6855 23 6 6.0181 6.9394 -0.3453 24 6 5.1634 7.7457 -1.0738 25 6 4.4573 7.2168 -2.1353 26 6 4.6008 5.8788 -2.4749 27 6 3.9414 5.0875 -3.5786 28 6 4.4685 3.6499 -3.4772 29 1 4.7051 3.1335 -4.4074 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8514 0.5683 0.8409 36 1 3.9785 2.1766 0.0889 37 1 3.3853 -1.3628 -0.6734 38 1 3.9120 -1.2113 -2.3668 39 1 7.3315 -3.9192 -0.6100 40 1 6.8381 4.9822 -0.1188 41 1 6.5721 7.3503 0.4858 42 1 5.0481 8.7871 -0.8126 43 1 3.7901 7.8472 -2.7043 44 1 2.8594 5.0969 -3.4470 45 1 4.2012 5.5140 -4.5475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599328634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:13 Heat of formation + Delta-G solvation = -16.955071 kcal Electronic energy + Delta-G solvation = -26351.606414 eV Core-core repulsion = 22721.262946 eV Total energy + Delta-G solvation = -3630.343469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88280 -39.06098 -37.66959 -36.66029 -34.90186 -32.57654 -31.78926 -30.64011 -29.82017 -28.07820 -27.51947 -26.05997 -24.61137 -22.72995 -22.60121 -21.70319 -20.57885 -20.27273 -18.42698 -17.07438 -16.86986 -16.39133 -16.18477 -15.69272 -15.37617 -15.19822 -15.08794 -14.83210 -14.22728 -13.95968 -13.74733 -13.54505 -13.24859 -12.93879 -12.76477 -12.55304 -12.39892 -12.12752 -11.94145 -11.73245 -11.65495 -11.49082 -11.38106 -10.97297 -10.93990 -10.83938 -10.46208 -10.38051 -10.07810 -9.99638 -9.54257 -9.46537 -9.08841 -8.86259 -8.52485 -8.50112 -7.66889 -6.01010 -3.98601 1.16977 1.25273 2.93675 3.36572 3.42121 3.47056 3.56201 3.64616 3.94894 4.00413 4.39203 4.48452 4.53821 4.76730 4.83741 4.93596 4.96931 5.02909 5.12219 5.19879 5.32450 5.35278 5.36439 5.39405 5.44747 5.47388 5.49885 5.55567 5.63175 5.67016 5.71536 5.76136 5.89249 5.91760 6.05968 6.20672 6.25963 6.32453 6.38955 6.58802 6.86495 6.94774 7.08029 7.30761 7.40366 7.71513 8.30067 8.54477 8.96327 9.03428 9.60255 11.12444 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.003860 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.825770 B = 7252.761406 C = 8067.512876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.112 3.888 5 N -0.578 5.578 6 C 0.220 3.780 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.900 5.900 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.537 3.463 16 O -0.536 6.536 17 C -0.145 4.145 18 H 0.117 0.883 19 C -0.103 4.103 20 H 0.126 0.874 21 C -0.060 4.060 22 C -0.098 4.098 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.110 4.110 26 C -0.094 4.094 27 C -0.055 4.055 28 C -0.125 4.125 29 H 0.133 0.867 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 20.441 0.953 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.035 4.035 4 C -0.012 4.012 5 N -0.308 5.308 6 C 0.099 3.901 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.539 5.539 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.323 3.677 16 O -0.414 6.414 17 C -0.166 4.166 18 H 0.135 0.865 19 C -0.121 4.121 20 H 0.144 0.856 21 C -0.060 4.060 22 C -0.116 4.116 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.128 4.128 26 C -0.094 4.094 27 C -0.091 4.091 28 C -0.143 4.143 29 H 0.151 0.849 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.025 19.802 0.427 22.199 hybrid contribution -0.703 -0.488 -0.016 0.856 sum -10.728 19.314 0.411 22.097 Atomic orbital electron populations 1.22708 0.81950 1.02552 0.99322 1.88061 1.18845 1.27249 1.95194 1.23158 0.95329 0.85284 0.99739 1.21551 0.90980 0.99503 0.89206 1.47718 1.64315 1.08775 1.09970 1.19702 0.97732 0.74738 0.97894 1.21368 0.96122 0.93544 1.45453 0.90877 1.24819 0.95148 0.98326 0.94657 1.69899 1.18192 1.17194 1.48645 0.86879 0.82557 0.81349 0.79201 1.20072 1.21210 1.18620 1.19227 0.78074 0.86416 0.83968 1.90670 1.46664 1.74470 1.29581 1.22859 0.99193 0.92093 1.02458 0.86523 1.21937 0.94746 0.93290 1.02167 0.85594 1.19726 0.96979 0.93596 0.95705 1.20790 0.99270 0.95318 0.96242 1.21030 0.99258 0.93656 1.00119 1.21007 0.97311 0.99704 0.95867 1.20611 1.00474 0.93811 0.97951 1.20539 0.97324 0.93813 0.97682 1.20340 1.00073 0.91489 0.97245 1.22909 1.01861 0.95293 0.94265 0.84946 0.94484 0.94509 0.89854 0.92815 0.93602 0.88703 0.89519 0.93852 0.94979 0.92696 0.85815 0.85845 0.85986 0.86277 0.89895 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.14 9.53 -35.23 -0.34 -6.47 16 3 C 0.04 0.59 6.13 37.16 0.23 0.82 16 4 C 0.11 1.83 5.45 -4.04 -0.02 1.80 16 5 N -0.58 -12.18 2.42 -175.06 -0.42 -12.60 16 6 C 0.22 5.58 4.05 -5.20 -0.02 5.55 16 7 C -0.53 -15.46 9.94 -34.44 -0.34 -15.80 16 8 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 9 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 11 Si 0.87 22.28 27.47 -169.99 -4.67 17.61 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 14 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 15 C 0.54 11.11 7.46 -10.99 -0.08 11.03 16 16 O -0.54 -13.34 15.91 5.55 0.09 -13.25 16 17 C -0.14 -2.22 4.55 -89.97 -0.41 -2.63 16 18 H 0.12 1.53 6.57 -51.93 -0.34 1.19 16 19 C -0.10 -1.50 6.72 -89.68 -0.60 -2.10 16 20 H 0.13 2.03 8.14 -51.93 -0.42 1.61 16 21 C -0.06 -0.76 5.97 -104.45 -0.62 -1.39 16 22 C -0.10 -1.13 10.04 -39.46 -0.40 -1.53 16 23 C -0.12 -1.19 10.04 -39.66 -0.40 -1.59 16 24 C -0.12 -1.10 10.05 -39.66 -0.40 -1.50 16 25 C -0.11 -1.07 10.04 -39.46 -0.40 -1.47 16 26 C -0.09 -1.06 6.12 -104.45 -0.64 -1.70 16 27 C -0.05 -0.58 6.56 -27.52 -0.18 -0.76 16 28 C -0.12 -1.72 6.43 -90.18 -0.58 -2.30 16 29 H 0.13 1.97 7.80 -51.93 -0.40 1.56 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.60 7.57 -51.93 -0.39 0.20 16 35 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 36 H 0.09 1.19 6.64 -51.93 -0.34 0.84 16 37 H 0.04 1.09 6.17 -51.93 -0.32 0.77 16 38 H 0.03 0.88 6.85 -51.93 -0.36 0.52 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -35.54 371.34 -9.64 -45.18 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.82 Total: 1.45 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.85 Total: -10.01 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.35 Total: -40.10 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.25 Total: -19.72 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.54 -9.64 -45.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599328634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.224 kcal (2) G-P(sol) polarization free energy of solvation -35.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds