Wall clock time and date at job start Tue Mar 31 2020 11:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00076 * 2 1 4 4 C 1.52999 * 109.47307 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47140 * 65.00012 * 4 3 2 6 6 C 1.46493 * 119.99826 * 269.99866 * 5 4 3 7 7 C 1.50705 * 109.47396 * 270.00114 * 6 5 4 8 8 H 1.08003 * 119.99488 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00182 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00116 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00036 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47237 * 90.00624 * 11 9 7 13 13 H 1.48499 * 109.47481 * 210.00685 * 11 9 7 14 14 H 1.48500 * 109.47210 * 330.00655 * 11 9 7 15 15 C 1.34777 * 119.99754 * 89.99838 * 5 4 3 16 16 O 1.21286 * 119.99889 * 179.97438 * 15 5 4 17 17 C 1.50695 * 120.00264 * 0.02562 * 15 5 4 18 18 H 1.09004 * 115.53872 * 325.58831 * 17 15 5 19 19 C 1.56317 * 117.06882 * 112.18950 * 17 15 5 20 20 H 1.08991 * 119.19093 * 356.98084 * 19 17 15 21 21 C 1.50949 * 119.07168 * 200.85797 * 19 17 15 22 22 C 1.38790 * 129.73213 * 116.16321 * 21 19 17 23 23 C 1.38016 * 120.31874 * 180.20211 * 22 21 19 24 24 C 1.38253 * 119.88710 * 359.42441 * 23 22 21 25 25 C 1.38021 * 119.87170 * 0.28047 * 24 23 22 26 26 C 1.37808 * 110.47645 * 295.82110 * 21 19 17 27 27 C 1.50968 * 110.46443 * 0.05849 * 26 21 19 28 28 C 1.53046 * 117.48225 * 179.97438 * 17 15 5 29 29 H 1.08994 * 119.41347 * 5.41732 * 28 17 15 30 30 H 1.09001 * 109.47258 * 299.99700 * 1 2 3 31 31 H 1.08997 * 109.47518 * 60.00273 * 1 2 3 32 32 H 1.09008 * 109.46817 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47087 * 59.99935 * 3 2 1 34 34 H 1.09000 * 109.46926 * 300.00216 * 3 2 1 35 35 H 1.09003 * 109.47143 * 305.00060 * 4 3 2 36 36 H 1.08999 * 109.47059 * 185.00082 * 4 3 2 37 37 H 1.08999 * 109.47444 * 30.00166 * 6 5 4 38 38 H 1.09003 * 109.47221 * 150.00140 * 6 5 4 39 39 H 0.96998 * 120.00127 * 179.97438 * 10 9 7 40 40 H 1.08000 * 119.84138 * 359.91597 * 22 21 19 41 41 H 1.08002 * 120.06151 * 179.71012 * 23 22 21 42 42 H 1.07989 * 120.06527 * 180.25229 * 24 23 22 43 43 H 1.08003 * 119.83706 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.92549 * 119.67072 * 27 26 21 45 45 H 1.09003 * 109.91512 * 240.77385 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1052 -0.8919 -1.3427 7 6 5.5010 -1.2977 -0.9449 8 1 6.2198 -0.5457 -0.6544 9 6 5.8607 -2.6287 -0.9526 10 7 7.0785 -2.9828 -0.6049 11 14 4.6176 -3.9291 -1.4556 12 1 4.7022 -4.1543 -2.9210 13 1 4.9122 -5.1977 -0.7421 14 1 3.2502 -3.4693 -1.1036 15 6 4.2614 1.3339 -2.3218 16 8 4.6263 0.8205 -3.3583 17 6 4.1286 2.8321 -2.2290 18 1 3.3186 3.1938 -1.5956 19 6 5.4474 3.6686 -2.2968 20 1 6.4038 3.1494 -2.3568 21 6 5.4528 5.0751 -1.7488 22 6 6.1667 5.6101 -0.6855 23 6 6.0181 6.9394 -0.3453 24 6 5.1634 7.7457 -1.0738 25 6 4.4573 7.2168 -2.1353 26 6 4.6008 5.8788 -2.4749 27 6 3.9414 5.0875 -3.5786 28 6 4.4685 3.6499 -3.4772 29 1 4.7051 3.1335 -4.4074 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8514 0.5683 0.8409 36 1 3.9785 2.1766 0.0889 37 1 3.3853 -1.3628 -0.6734 38 1 3.9120 -1.2113 -2.3668 39 1 7.3315 -3.9192 -0.6100 40 1 6.8381 4.9822 -0.1188 41 1 6.5721 7.3503 0.4858 42 1 5.0481 8.7871 -0.8126 43 1 3.7901 7.8472 -2.7043 44 1 2.8594 5.0969 -3.4470 45 1 4.2012 5.5140 -4.5475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599328634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:12 Heat of formation + Delta-G solvation = -38.867669 kcal Electronic energy + Delta-G solvation = -26352.556616 eV Core-core repulsion = 22721.262946 eV Total energy + Delta-G solvation = -3631.293670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96019 -40.46059 -38.82449 -37.72586 -36.57741 -34.77673 -32.70696 -31.73100 -31.22415 -29.60552 -28.58839 -27.10413 -26.06756 -24.16971 -23.87161 -22.84011 -21.60445 -21.33651 -19.92857 -19.12315 -18.42839 -17.60724 -17.19555 -16.97136 -16.69287 -16.40198 -16.05911 -15.95065 -15.83874 -15.33047 -15.16247 -14.57859 -14.45096 -14.39461 -13.94111 -13.78866 -13.73381 -13.40684 -13.33182 -13.12629 -12.92290 -12.77923 -12.65978 -12.48636 -12.22014 -12.06750 -11.98190 -11.75965 -11.71588 -11.52383 -11.13322 -10.83766 -10.77785 -10.56420 -9.65708 -9.48752 -9.36180 -8.35149 -6.39190 0.33982 0.48604 1.30816 1.33760 1.44907 1.50671 2.10261 2.30442 2.58387 2.91317 2.94706 3.00266 3.26472 3.51121 3.65561 3.81092 3.91655 4.09068 4.12575 4.20124 4.22849 4.26914 4.34769 4.38676 4.49263 4.54168 4.59111 4.61194 4.68416 4.80753 4.85926 4.88035 4.89323 4.90681 4.95711 4.98376 5.07143 5.12745 5.28132 5.45247 5.56718 5.59978 5.64142 5.75183 6.11854 6.22403 6.29673 6.60953 6.66805 7.19469 7.35170 8.81864 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.003860 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.825770 B = 7252.761406 C = 8067.512876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.049 3.951 4 C 0.106 3.894 5 N -0.586 5.586 6 C 0.236 3.764 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.944 3.056 12 H -0.275 1.275 13 H -0.271 1.271 14 H -0.243 1.243 15 C 0.527 3.473 16 O -0.591 6.591 17 C -0.143 4.143 18 H 0.148 0.852 19 C -0.107 4.107 20 H 0.093 0.907 21 C -0.083 4.083 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.097 4.097 27 C -0.045 4.045 28 C -0.118 4.118 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.011 0.989 39 H 0.268 0.732 40 H 0.117 0.883 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.105 0.895 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.462 23.413 1.466 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.028 4.028 4 C -0.017 4.017 5 N -0.315 5.315 6 C 0.114 3.886 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.184 4.184 10 N -0.585 5.585 11 Si 0.767 3.233 12 H -0.201 1.201 13 H -0.196 1.196 14 H -0.166 1.166 15 C 0.316 3.684 16 O -0.473 6.473 17 C -0.164 4.164 18 H 0.165 0.835 19 C -0.126 4.126 20 H 0.112 0.888 21 C -0.083 4.083 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.082 4.082 28 C -0.136 4.136 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.077 0.923 40 H 0.135 0.865 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.165 0.835 44 H 0.123 0.877 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.061 22.816 0.981 26.308 hybrid contribution 0.359 -1.324 -0.128 1.378 sum -12.702 21.492 0.853 24.979 Atomic orbital electron populations 1.22886 0.79779 1.03307 1.00942 1.87988 1.21355 1.28747 1.95567 1.23134 0.92679 0.84990 1.02040 1.21848 0.93659 0.99925 0.86257 1.47782 1.64371 1.07327 1.11973 1.19235 0.95141 0.77948 0.96314 1.21584 0.97400 0.92996 1.45424 0.95329 1.25783 0.97333 1.00879 0.94437 1.70041 1.20418 1.18113 1.49885 0.85762 0.80525 0.78370 0.78654 1.20077 1.19643 1.16587 1.20140 0.76544 0.88743 0.82926 1.90624 1.49015 1.76028 1.31612 1.22656 1.00817 0.88165 1.04734 0.83481 1.21847 0.93021 0.94283 1.03437 0.88835 1.19620 0.99127 0.92298 0.97275 1.20924 0.99579 0.96502 0.96368 1.21323 0.99390 0.92755 1.00724 1.21430 0.95889 1.01037 0.94899 1.20950 1.00553 0.93126 0.98088 1.20659 0.97031 0.94566 0.97479 1.20338 1.01141 0.88583 0.98099 1.22990 1.01063 0.96783 0.92783 0.86827 0.92061 0.93575 0.89701 0.88977 0.92499 0.90419 0.86989 0.93080 0.97112 0.92256 0.86461 0.83725 0.82880 0.83453 0.87669 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.82 16 2 O -0.42 -12.97 9.53 -148.98 -1.42 -14.39 16 3 C 0.05 1.24 6.13 71.98 0.44 1.68 16 4 C 0.11 3.43 5.45 86.38 0.47 3.90 16 5 N -0.59 -25.54 2.42 -826.16 -2.00 -27.54 16 6 C 0.24 12.41 4.05 85.64 0.35 12.76 16 7 C -0.54 -33.19 9.94 25.60 0.25 -32.94 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.01 0.84 5.47 84.66 0.46 1.30 16 10 N -0.94 -61.63 13.96 21.45 0.30 -61.33 16 11 Si 0.94 46.98 27.47 68.60 1.88 48.87 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 13 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 14 H -0.24 -11.23 6.54 99.48 0.65 -10.58 16 15 C 0.53 22.83 7.46 87.66 0.65 23.48 16 16 O -0.59 -31.31 15.91 -3.05 -0.05 -31.36 16 17 C -0.14 -4.41 4.55 -10.37 -0.05 -4.45 16 18 H 0.15 3.57 6.57 -2.39 -0.02 3.55 16 19 C -0.11 -3.24 6.72 -10.19 -0.07 -3.31 16 20 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 21 C -0.08 -2.05 5.97 -19.76 -0.12 -2.17 16 22 C -0.12 -2.58 10.04 22.35 0.22 -2.35 16 23 C -0.12 -2.08 10.04 22.22 0.22 -1.85 16 24 C -0.11 -1.60 10.05 22.22 0.22 -1.38 16 25 C -0.11 -1.66 10.04 22.35 0.22 -1.43 16 26 C -0.10 -1.94 6.12 -19.75 -0.12 -2.07 16 27 C -0.05 -0.84 6.56 30.08 0.20 -0.65 16 28 C -0.12 -3.24 6.43 -10.51 -0.07 -3.30 16 29 H 0.11 3.55 7.80 -2.39 -0.02 3.53 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.32 7.57 -2.39 -0.02 1.30 16 35 H 0.08 2.77 8.07 -2.39 -0.02 2.75 16 36 H 0.11 2.99 6.64 -2.39 -0.02 2.98 16 37 H 0.05 2.61 6.17 -2.39 -0.01 2.59 16 38 H 0.01 0.61 6.85 -2.39 -0.02 0.60 16 39 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 40 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.15 1.20 8.06 -2.92 -0.02 1.17 16 43 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -83.27 371.34 4.19 -79.08 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.92 Total: 17.62 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 4.55 Total: -10.96 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -1.70 Total: -88.86 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.47 Total: -45.76 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.88 Total: 48.87 kcal Total: -83.27 4.19 -79.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599328634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.216 kcal (2) G-P(sol) polarization free energy of solvation -83.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds