Wall clock time and date at job start Tue Mar 31 2020 11:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00027 * 2 1 4 4 H 1.09003 * 112.88650 * 21.83715 * 3 2 1 5 5 C 1.53948 * 113.66142 * 250.49668 * 3 2 1 6 6 C 1.53949 * 87.29582 * 220.79273 * 5 3 2 7 7 H 1.09003 * 113.66643 * 139.29371 * 6 5 3 8 8 N 1.46503 * 113.66233 * 270.25871 * 6 5 3 9 9 C 1.34771 * 120.00142 * 255.49564 * 8 6 5 10 10 O 1.21603 * 120.00223 * 359.97438 * 9 8 6 11 11 C 1.47435 * 120.00101 * 179.97438 * 9 8 6 12 12 C 1.39227 * 120.27772 * 354.11660 * 11 9 8 13 13 C 1.38230 * 120.08902 * 180.02562 * 12 11 9 14 14 C 1.38830 * 120.67595 * 0.02562 * 13 12 11 15 15 C 1.37597 * 120.56969 * 359.74594 * 14 13 12 16 16 C 1.40707 * 119.88218 * 0.48930 * 15 14 13 17 17 C 1.40884 * 120.32847 * 179.78704 * 16 15 14 18 18 H 1.08007 * 120.00080 * 146.49959 * 17 16 15 19 19 C 1.40271 * 120.00324 * 326.49409 * 17 16 15 20 20 N 1.30635 * 119.99916 * 335.79491 * 19 17 16 21 21 Si 1.86802 * 120.00063 * 155.78766 * 19 17 16 22 22 H 1.48501 * 109.46864 * 180.02562 * 21 19 17 23 23 H 1.48491 * 109.47101 * 60.00450 * 21 19 17 24 24 H 1.48506 * 109.47217 * 300.00202 * 21 19 17 25 25 C 1.52906 * 86.78487 * 24.73158 * 6 5 3 26 26 C 1.52904 * 121.14441 * 209.38008 * 25 6 5 27 27 C 1.53951 * 86.78548 * 209.37545 * 26 25 6 28 28 C 1.52913 * 121.13932 * 100.81229 * 25 6 5 29 29 H 1.09009 * 109.46929 * 300.00266 * 1 2 3 30 30 H 1.08995 * 109.47089 * 59.99766 * 1 2 3 31 31 H 1.08996 * 109.46959 * 180.02562 * 1 2 3 32 32 H 1.08996 * 113.58476 * 106.18723 * 5 3 2 33 33 H 1.09006 * 113.64991 * 335.40338 * 5 3 2 34 34 H 0.97004 * 119.99711 * 75.49399 * 8 6 5 35 35 H 1.08000 * 119.96072 * 0.02562 * 12 11 9 36 36 H 1.07997 * 119.65774 * 180.02562 * 13 12 11 37 37 H 1.07999 * 119.71349 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.05864 * 180.25302 * 15 14 13 39 39 H 0.96996 * 119.99712 * 354.13424 * 20 19 17 40 40 H 1.08996 * 113.66126 * 323.85129 * 26 25 6 41 41 H 1.09010 * 113.65964 * 94.90518 * 26 25 6 42 42 H 1.09004 * 113.58226 * 270.13680 * 27 26 25 43 43 H 1.08990 * 113.58161 * 139.33797 * 27 26 25 44 44 H 1.08997 * 113.66366 * 265.10158 * 28 25 6 45 45 H 1.08999 * 113.65986 * 36.15992 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3311 2.0718 0.3735 5 6 2.6916 1.6783 -1.3292 6 6 3.8158 2.3131 -0.4906 7 1 4.8149 2.1237 -0.8833 8 7 3.5868 3.7248 -0.1728 9 6 4.2717 4.6828 -0.8281 10 8 5.0801 4.3755 -1.6830 11 6 4.0408 6.1035 -0.5086 12 6 3.0323 6.4685 0.3791 13 6 2.8188 7.8016 0.6755 14 6 3.6019 8.7903 0.0953 15 6 4.6091 8.4603 -0.7822 16 6 4.8438 7.1110 -1.1046 17 6 5.8697 6.7628 -2.0053 18 1 6.4142 5.8395 -1.8729 19 6 6.1838 7.6151 -3.0742 20 7 5.2869 8.4480 -3.5307 21 14 7.8846 7.5593 -3.8446 22 1 7.9614 8.5514 -4.9469 23 1 8.1395 6.1993 -4.3835 24 1 8.9051 7.8833 -2.8155 25 6 3.4030 1.3572 0.6291 26 6 3.5931 1.7321 2.0992 27 6 3.7469 0.2252 2.3739 28 6 4.1926 0.0777 0.9077 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.1282 2.4000 -1.9206 33 1 3.0159 0.8157 -1.9114 34 1 2.9422 3.9700 0.5094 35 1 2.4158 5.7090 0.8369 36 1 2.0349 8.0769 1.3654 37 1 3.4214 9.8272 0.3375 38 1 5.2160 9.2359 -1.2256 39 1 4.3796 8.4188 -3.1891 40 1 4.4995 2.3065 2.2905 41 1 2.7067 2.1719 2.5567 42 1 2.8047 -0.2761 2.5957 43 1 4.5312 -0.0090 3.0937 44 1 3.7854 -0.8042 0.4132 45 1 5.2676 0.1871 0.7642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601631988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:30 Heat of formation + Delta-G solvation = -22.780277 kcal Electronic energy + Delta-G solvation = -26595.172218 eV Core-core repulsion = 22964.576150 eV Total energy + Delta-G solvation = -3630.596069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96052 -38.74279 -37.09911 -36.83377 -34.84853 -33.96678 -32.04608 -29.86752 -29.32933 -27.02076 -25.84501 -25.35272 -24.70554 -23.98434 -22.39580 -21.14127 -20.61824 -19.46007 -18.54514 -17.88647 -16.88554 -16.43669 -15.84023 -15.64850 -15.30559 -14.78208 -14.61586 -14.26622 -14.12312 -13.86378 -13.58041 -13.24027 -12.84274 -12.80977 -12.42420 -12.38292 -12.26790 -12.12222 -11.88761 -11.75903 -11.33239 -11.16196 -11.06341 -10.93025 -10.76125 -10.41734 -10.38774 -10.32249 -10.19598 -10.04865 -9.67388 -9.40113 -9.03509 -8.56089 -8.36152 -7.79745 -7.64927 -7.18772 -4.47178 2.23410 2.73090 3.19364 3.29733 3.39591 3.58130 3.80433 4.01227 4.02986 4.31789 4.51323 4.58959 4.67200 4.73998 4.80773 4.97172 5.12132 5.22508 5.27216 5.40309 5.46098 5.46881 5.62993 5.72554 5.77331 5.82889 5.86520 5.89269 5.93666 6.00595 6.08868 6.11941 6.24106 6.33037 6.43068 6.53577 6.70538 6.98646 7.05737 7.18698 7.27177 7.48676 7.57634 7.71572 7.87554 8.07581 8.20126 8.35810 8.72345 8.83155 9.34657 9.98673 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003744 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.837715 B = 7476.256595 C = 8185.869376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.088 3.912 4 H 0.086 0.914 5 C -0.168 4.168 6 C 0.146 3.854 7 H 0.103 0.897 8 N -0.729 5.729 9 C 0.566 3.434 10 O -0.535 6.535 11 C -0.268 4.268 12 C -0.042 4.042 13 C -0.262 4.262 14 C -0.075 4.075 15 C -0.201 4.201 16 C 0.121 3.879 17 C -0.467 4.467 18 H 0.106 0.894 19 C 0.035 3.965 20 N -0.785 5.785 21 Si 1.067 2.933 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.110 4.110 26 C -0.126 4.126 27 C -0.135 4.135 28 C -0.103 4.103 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.390 0.610 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.298 0.702 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 -12.446 7.922 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C 0.030 3.970 4 H 0.104 0.896 5 C -0.207 4.207 6 C 0.039 3.961 7 H 0.121 0.879 8 N -0.382 5.382 9 C 0.361 3.639 10 O -0.413 6.413 11 C -0.273 4.273 12 C -0.061 4.061 13 C -0.282 4.282 14 C -0.094 4.094 15 C -0.220 4.220 16 C 0.117 3.883 17 C -0.494 4.494 18 H 0.124 0.876 19 C -0.188 4.188 20 N -0.407 5.407 21 Si 0.890 3.110 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.111 4.111 26 C -0.163 4.163 27 C -0.172 4.172 28 C -0.141 4.141 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.225 0.775 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.605 -12.063 6.108 14.284 hybrid contribution -1.916 -0.261 1.568 2.490 sum -6.521 -12.324 7.676 15.916 Atomic orbital electron populations 1.22759 0.81593 1.02428 0.99906 1.87914 1.19156 1.27473 1.94584 1.23476 0.92311 0.84759 0.96440 0.89621 1.23970 0.98654 1.01117 0.96972 1.21261 0.99345 0.81084 0.94363 0.87866 1.45676 1.45486 1.04239 1.42757 1.18390 0.79593 0.85524 0.80439 1.90678 1.35182 1.83020 1.32407 1.19344 1.04362 0.91581 1.12009 1.20692 0.95168 0.95212 0.95005 1.20218 1.05893 0.92876 1.09180 1.20730 0.95220 0.97170 0.96252 1.21219 1.01496 0.96301 1.02989 1.17460 0.89525 0.90132 0.91202 1.21170 1.12895 1.07369 1.07927 0.87623 1.27267 1.05564 0.90588 0.95403 1.70386 1.05508 1.29536 1.35281 0.83612 0.72897 0.77709 0.76789 1.19900 1.19731 1.19891 1.23192 0.95408 0.97732 0.94735 1.22713 1.02271 0.96737 0.94596 1.22781 1.01376 0.96398 0.96661 1.22438 0.99236 0.96221 0.96209 0.94242 0.94076 0.89907 0.90838 0.88831 0.77522 0.89319 0.88992 0.88947 0.87705 0.88899 0.89383 0.91683 0.90254 0.91700 0.90460 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.86 101.05 1.10 1.36 16 2 O -0.37 -4.40 9.90 -35.23 -0.35 -4.74 16 3 C 0.09 1.07 4.10 -26.28 -0.11 0.96 16 4 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 5 C -0.17 -2.35 7.71 -25.75 -0.20 -2.55 16 6 C 0.15 2.26 4.08 -67.48 -0.28 1.98 16 7 H 0.10 1.80 7.54 -51.93 -0.39 1.41 16 8 N -0.73 -12.70 5.02 -54.44 -0.27 -12.98 16 9 C 0.57 12.93 7.72 -12.52 -0.10 12.83 16 10 O -0.53 -14.02 13.22 5.27 0.07 -13.95 16 11 C -0.27 -6.44 5.92 -104.36 -0.62 -7.06 16 12 C -0.04 -0.87 9.52 -39.22 -0.37 -1.25 16 13 C -0.26 -5.45 10.03 -39.37 -0.39 -5.84 16 14 C -0.07 -1.65 10.01 -39.60 -0.40 -2.04 16 15 C -0.20 -4.97 8.07 -38.88 -0.31 -5.28 16 16 C 0.12 3.20 5.13 -106.54 -0.55 2.65 16 17 C -0.47 -12.74 7.63 -37.82 -0.29 -13.03 16 18 H 0.11 3.01 5.96 -52.48 -0.31 2.70 16 19 C 0.03 0.89 4.92 -17.30 -0.09 0.81 16 20 N -0.78 -20.86 12.61 55.56 0.70 -20.16 16 21 Si 1.07 22.30 30.00 -169.99 -5.10 17.20 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.11 -1.35 0.92 -154.71 -0.14 -1.49 16 26 C -0.13 -1.42 7.43 -26.28 -0.20 -1.62 16 27 C -0.13 -1.37 8.08 -25.75 -0.21 -1.58 16 28 C -0.10 -1.16 7.55 -26.28 -0.20 -1.36 16 29 H 0.04 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.39 5.97 6.61 -40.82 -0.27 5.70 16 35 H 0.09 1.53 6.44 -52.49 -0.34 1.19 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.10 2.64 7.07 -52.49 -0.37 2.27 16 39 H 0.30 8.13 6.96 -40.82 -0.28 7.84 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.88 7.65 -51.93 -0.40 0.48 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -29.39 365.40 -9.43 -38.82 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.64 Total: 12.81 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -3.34 Total: -22.50 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.43 Total: -33.14 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.28 Total: -18.70 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.10 Total: 17.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.39 -9.43 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601631988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.035 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds